Wall clock time and date at job start Fri Apr 10 2020 17:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00421 * 2 1 4 4 H 1.48507 * 109.46921 * 239.99910 * 3 2 1 5 5 H 1.48496 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47074 * 119.99843 * 3 2 1 7 7 C 1.37878 * 119.99381 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99473 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00446 * 359.97438 * 7 2 1 10 10 O 1.42896 * 113.41639 * 313.20720 * 9 7 2 11 11 C 1.53495 * 114.20755 * 180.02562 * 9 7 2 12 12 N 1.47065 * 87.98627 * 220.35207 * 11 9 7 13 13 C 1.34778 * 136.05453 * 207.08801 * 12 11 9 14 14 O 1.21283 * 120.00134 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99857 * 179.97438 * 13 12 11 16 16 H 1.09006 * 110.80057 * 56.68756 * 15 13 12 17 17 C 1.56778 * 111.37369 * 292.74476 * 15 13 12 18 18 C 1.55821 * 102.92476 * 241.53413 * 17 15 13 19 19 H 1.09002 * 115.38769 * 159.05524 * 18 17 15 20 20 O 1.46525 * 101.24789 * 32.63047 * 18 17 15 21 21 C 1.46534 * 99.68592 * 305.83972 * 20 18 17 22 22 H 1.09002 * 115.68503 * 180.34127 * 21 20 18 23 23 C 1.55825 * 101.24086 * 305.83688 * 21 20 18 24 24 H 1.09004 * 118.19181 * 171.69199 * 23 21 20 25 25 C 1.52997 * 117.24262 * 328.39454 * 23 21 20 26 26 C 1.55002 * 102.78724 * 32.42279 * 23 21 20 27 27 H 1.08990 * 123.14756 * 137.44536 * 26 23 21 28 28 C 1.47063 * 87.88543 * 27.34167 * 12 11 9 29 29 H 0.97002 * 119.99922 * 0.02562 * 1 2 3 30 30 H 0.96702 * 113.99905 * 46.79561 * 10 9 7 31 31 H 1.08999 * 113.46414 * 105.57120 * 11 9 7 32 32 H 1.08996 * 113.47048 * 335.13171 * 11 9 7 33 33 H 1.08999 * 110.49768 * 123.24693 * 17 15 13 34 34 H 1.08995 * 111.02086 * 0.06411 * 17 15 13 35 35 H 1.09001 * 117.40619 * 196.95186 * 25 23 21 36 36 H 1.09000 * 117.40682 * 341.55583 * 25 23 21 37 37 H 1.09003 * 113.46257 * 87.43647 * 28 12 11 38 38 H 1.09000 * 113.46785 * 217.87482 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 8 0.1898 -2.5423 0.9556 11 6 2.1485 -3.7443 -0.0005 12 7 1.2097 -4.3574 -0.9522 13 6 0.8352 -5.6114 -1.2745 14 8 1.3297 -6.5584 -0.7004 15 6 -0.1988 -5.8366 -2.3474 16 1 0.1096 -5.3748 -3.2854 17 6 -1.6076 -5.3119 -1.9025 18 6 -2.4804 -6.6026 -1.9155 19 1 -3.3879 -6.5592 -1.3133 20 8 -1.4956 -7.6175 -1.5318 21 6 -0.4679 -7.3588 -2.5439 22 1 0.4130 -7.9990 -2.4970 23 6 -1.3010 -7.4638 -3.8565 24 1 -0.8232 -7.1788 -4.7939 25 6 -2.4850 -8.4327 -3.8590 26 6 -2.6937 -6.9403 -3.4217 27 1 -3.2925 -6.2631 -4.0306 28 6 0.8643 -3.0005 -1.4018 29 1 -0.4850 0.8401 -0.0004 30 1 -0.3738 -1.7566 0.9534 31 1 2.1846 -4.2533 0.9626 32 1 3.1382 -3.5660 -0.4210 33 1 -1.9865 -4.5821 -2.6180 34 1 -1.5668 -4.8834 -0.9011 35 1 -2.8918 -8.7254 -4.8269 36 1 -2.5034 -9.2044 -3.0894 37 1 1.5155 -2.6260 -2.1916 38 1 -0.1937 -2.8759 -1.6325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333748610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:43 Heat of formation + Delta-G solvation = -34.134176 kcal Electronic energy + Delta-G solvation = -22528.699410 eV Core-core repulsion = 19146.456326 eV Total energy + Delta-G solvation = -3382.243084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37742 -39.35941 -37.25825 -34.10587 -34.02421 -32.22166 -32.00453 -29.41443 -28.55496 -25.61249 -25.10951 -23.84407 -22.48297 -20.49394 -20.21280 -19.73151 -18.16198 -17.48234 -16.95866 -16.43165 -15.82626 -15.40474 -15.03935 -14.59785 -14.19556 -14.17354 -13.68557 -13.10434 -12.77178 -12.64711 -12.44696 -12.33373 -11.98001 -11.57744 -11.56195 -11.46809 -11.26955 -11.10874 -11.04695 -11.00580 -10.52191 -10.29485 -10.18584 -9.94624 -9.72732 -9.57006 -9.13227 -8.79319 -8.40307 -7.84074 -6.43055 -4.53353 3.13852 3.17574 3.19951 3.22256 3.33015 3.51988 3.86843 4.15788 4.46182 4.52885 4.59261 4.79144 4.81951 4.84443 4.97120 5.18178 5.19851 5.36888 5.53610 5.58495 5.61927 5.66577 5.82822 5.89331 5.92026 6.02429 6.10864 6.18882 6.21980 6.39978 6.49249 6.56661 6.64666 6.66620 7.08894 7.60130 7.78113 8.48753 8.53625 8.78211 9.18119 9.46765 10.63551 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.033208 B = 0.004457 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.957832 B = 6281.028541 C = 6611.737380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.241 3.759 10 O -0.570 6.570 11 C 0.106 3.894 12 N -0.634 5.634 13 C 0.546 3.454 14 O -0.558 6.558 15 C -0.126 4.126 16 H 0.103 0.897 17 C -0.128 4.128 18 C 0.089 3.911 19 H 0.133 0.867 20 O -0.361 6.361 21 C 0.117 3.883 22 H 0.135 0.865 23 C -0.194 4.194 24 H 0.120 0.880 25 C -0.136 4.136 26 C -0.199 4.199 27 H 0.124 0.876 28 C 0.072 3.928 29 H 0.274 0.726 30 H 0.393 0.607 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 -7.652 -8.888 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.199 3.801 10 O -0.383 6.383 11 C -0.016 4.016 12 N -0.367 5.367 13 C 0.335 3.665 14 O -0.437 6.437 15 C -0.147 4.147 16 H 0.121 0.879 17 C -0.166 4.166 18 C 0.032 3.968 19 H 0.150 0.850 20 O -0.279 6.279 21 C 0.059 3.941 22 H 0.153 0.847 23 C -0.213 4.213 24 H 0.138 0.862 25 C -0.172 4.172 26 C -0.217 4.217 27 H 0.142 0.858 28 C -0.052 4.052 29 H 0.085 0.915 30 H 0.250 0.750 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.738 -8.959 -8.305 13.103 hybrid contribution 0.197 1.770 -0.634 1.890 sum -4.541 -7.189 -8.939 12.337 Atomic orbital electron populations 1.69253 1.06205 1.28309 1.50158 1.25067 0.95019 0.99891 0.92982 0.86370 0.79498 0.81536 0.79023 1.19881 1.20968 1.19801 1.21415 0.93913 0.89821 1.52134 0.90998 1.19561 0.85372 0.90971 0.84194 1.86055 1.45005 1.48255 1.59003 1.23319 0.93786 0.92265 0.92273 1.49692 1.42434 1.04706 1.39842 1.19640 0.82508 0.81054 0.83294 1.90642 1.57770 1.40748 1.54559 1.23086 0.95434 0.97571 0.98656 0.87897 1.23413 0.92202 0.97416 1.03605 1.24211 0.93032 0.87453 0.92152 0.84985 1.90141 1.30474 1.54994 1.52340 1.23955 0.91894 0.93754 0.84528 0.84714 1.24354 0.91332 1.06086 0.99498 0.86230 1.23380 0.99543 0.91946 1.02368 1.24996 1.01263 0.98067 0.97356 0.85849 1.24260 1.00337 0.77943 1.02623 0.91524 0.75024 0.91599 0.89789 0.89825 0.89351 0.88213 0.88129 0.90247 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.29 11.01 55.43 0.61 -21.68 16 2 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 3 Si 0.91 19.07 29.54 -169.99 -5.02 14.05 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.53 -13.19 8.69 -34.44 -0.30 -13.49 16 8 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.24 5.71 1.59 -91.12 -0.14 5.57 16 10 O -0.57 -14.59 13.55 -35.23 -0.48 -15.07 16 11 C 0.11 2.33 8.02 -8.51 -0.07 2.26 16 12 N -0.63 -13.39 3.69 -185.06 -0.68 -14.07 16 13 C 0.55 11.24 7.32 -10.98 -0.08 11.16 16 14 O -0.56 -13.19 16.69 5.55 0.09 -13.10 16 15 C -0.13 -2.01 2.80 -88.22 -0.25 -2.26 16 16 H 0.10 1.45 8.02 -51.93 -0.42 1.03 16 17 C -0.13 -1.91 5.90 -23.18 -0.14 -2.05 16 18 C 0.09 1.20 5.67 -23.72 -0.13 1.07 16 19 H 0.13 1.54 8.14 -51.93 -0.42 1.11 16 20 O -0.36 -6.06 10.82 -35.23 -0.38 -6.45 16 21 C 0.12 1.75 4.50 -23.72 -0.11 1.65 16 22 H 0.14 2.08 7.78 -51.93 -0.40 1.67 16 23 C -0.19 -2.25 6.48 -88.06 -0.57 -2.82 16 24 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 25 C -0.14 -1.41 9.98 -24.62 -0.25 -1.65 16 26 C -0.20 -2.20 6.79 -85.94 -0.58 -2.78 16 27 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 28 C 0.07 1.50 7.85 -8.38 -0.07 1.43 16 29 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 30 H 0.39 10.11 6.33 45.56 0.29 10.40 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 33 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 34 H 0.09 1.56 7.83 -51.93 -0.41 1.15 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.15 7.72 -51.93 -0.40 0.75 16 37 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 38 H 0.06 1.32 7.83 -51.93 -0.41 0.92 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -28.88 314.17 -8.57 -37.45 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -4.66 Total: 14.36 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.78 Total: -0.23 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.07 Total: -35.76 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.77 Total: -34.61 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.88 -8.57 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333748610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.317 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds