Wall clock time and date at job start Fri Apr 10 2020 17:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00421 * 2 1 4 4 H 1.48507 * 109.46921 * 239.99910 * 3 2 1 5 5 H 1.48496 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47074 * 119.99843 * 3 2 1 7 7 C 1.37878 * 119.99381 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99473 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00446 * 359.97438 * 7 2 1 10 10 O 1.42896 * 113.41639 * 313.20720 * 9 7 2 11 11 C 1.53495 * 114.20755 * 180.02562 * 9 7 2 12 12 N 1.47065 * 87.98627 * 220.35207 * 11 9 7 13 13 C 1.34778 * 136.05453 * 207.08801 * 12 11 9 14 14 O 1.21283 * 120.00134 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99857 * 179.97438 * 13 12 11 16 16 H 1.09006 * 110.80057 * 56.68756 * 15 13 12 17 17 C 1.56778 * 111.37369 * 292.74476 * 15 13 12 18 18 C 1.55821 * 102.92476 * 241.53413 * 17 15 13 19 19 H 1.09002 * 115.38769 * 159.05524 * 18 17 15 20 20 O 1.46525 * 101.24789 * 32.63047 * 18 17 15 21 21 C 1.46534 * 99.68592 * 305.83972 * 20 18 17 22 22 H 1.09002 * 115.68503 * 180.34127 * 21 20 18 23 23 C 1.55825 * 101.24086 * 305.83688 * 21 20 18 24 24 H 1.09004 * 118.19181 * 171.69199 * 23 21 20 25 25 C 1.52997 * 117.24262 * 328.39454 * 23 21 20 26 26 C 1.55002 * 102.78724 * 32.42279 * 23 21 20 27 27 H 1.08990 * 123.14756 * 137.44536 * 26 23 21 28 28 C 1.47063 * 87.88543 * 27.34167 * 12 11 9 29 29 H 0.97002 * 119.99922 * 0.02562 * 1 2 3 30 30 H 0.96702 * 113.99905 * 46.79561 * 10 9 7 31 31 H 1.08999 * 113.46414 * 105.57120 * 11 9 7 32 32 H 1.08996 * 113.47048 * 335.13171 * 11 9 7 33 33 H 1.08999 * 110.49768 * 123.24693 * 17 15 13 34 34 H 1.08995 * 111.02086 * 0.06411 * 17 15 13 35 35 H 1.09001 * 117.40619 * 196.95186 * 25 23 21 36 36 H 1.09000 * 117.40682 * 341.55583 * 25 23 21 37 37 H 1.09003 * 113.46257 * 87.43647 * 28 12 11 38 38 H 1.09000 * 113.46785 * 217.87482 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 8 0.1898 -2.5423 0.9556 11 6 2.1485 -3.7443 -0.0005 12 7 1.2097 -4.3574 -0.9522 13 6 0.8352 -5.6114 -1.2745 14 8 1.3297 -6.5584 -0.7004 15 6 -0.1988 -5.8366 -2.3474 16 1 0.1096 -5.3748 -3.2854 17 6 -1.6076 -5.3119 -1.9025 18 6 -2.4804 -6.6026 -1.9155 19 1 -3.3879 -6.5592 -1.3133 20 8 -1.4956 -7.6175 -1.5318 21 6 -0.4679 -7.3588 -2.5439 22 1 0.4130 -7.9990 -2.4970 23 6 -1.3010 -7.4638 -3.8565 24 1 -0.8232 -7.1788 -4.7939 25 6 -2.4850 -8.4327 -3.8590 26 6 -2.6937 -6.9403 -3.4217 27 1 -3.2925 -6.2631 -4.0306 28 6 0.8643 -3.0005 -1.4018 29 1 -0.4850 0.8401 -0.0004 30 1 -0.3738 -1.7566 0.9534 31 1 2.1846 -4.2533 0.9626 32 1 3.1382 -3.5660 -0.4210 33 1 -1.9865 -4.5821 -2.6180 34 1 -1.5668 -4.8834 -0.9011 35 1 -2.8918 -8.7254 -4.8269 36 1 -2.5034 -9.2044 -3.0894 37 1 1.5155 -2.6260 -2.1916 38 1 -0.1937 -2.8759 -1.6325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333748610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:42 Heat of formation + Delta-G solvation = -54.346283 kcal Electronic energy + Delta-G solvation = -22529.575873 eV Core-core repulsion = 19146.456326 eV Total energy + Delta-G solvation = -3383.119546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.51816 -41.03053 -38.98336 -35.91026 -35.09418 -34.13205 -33.32519 -30.61399 -30.18966 -27.36184 -26.84367 -24.98342 -23.71699 -21.78673 -21.38744 -20.91588 -19.85284 -19.25402 -18.16324 -17.83880 -17.28096 -16.93315 -16.72551 -16.23420 -15.94856 -15.33564 -15.00764 -14.69173 -14.45346 -14.15743 -13.72228 -13.63046 -13.40867 -13.39256 -12.86795 -12.82777 -12.74417 -12.49255 -12.30285 -12.22485 -12.18029 -12.14266 -11.40475 -11.18870 -11.03606 -10.82726 -10.62477 -10.61107 -10.22802 -9.60157 -8.27690 -6.44840 1.48724 1.50877 1.56344 1.58903 1.88275 2.40643 2.55961 2.72673 2.94497 3.31829 3.44301 3.52558 3.66311 3.75534 3.84822 3.91969 4.06935 4.12679 4.17686 4.29921 4.44553 4.55839 4.60269 4.62949 4.75981 4.79686 4.83554 4.86814 4.91060 4.94132 4.97111 5.11977 5.23367 5.31643 5.50752 5.72315 5.90376 6.60516 6.86139 7.10985 7.29203 7.48716 8.78398 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.033208 B = 0.004457 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.957832 B = 6281.028541 C = 6611.737380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.035 3.965 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.220 3.780 10 O -0.586 6.586 11 C 0.102 3.898 12 N -0.635 5.635 13 C 0.537 3.463 14 O -0.596 6.596 15 C -0.121 4.121 16 H 0.130 0.870 17 C -0.124 4.124 18 C 0.082 3.918 19 H 0.145 0.855 20 O -0.397 6.397 21 C 0.108 3.892 22 H 0.120 0.880 23 C -0.192 4.192 24 H 0.144 0.856 25 C -0.126 4.126 26 C -0.189 4.189 27 H 0.151 0.849 28 C 0.089 3.911 29 H 0.277 0.723 30 H 0.389 0.611 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.791 -7.072 -11.377 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.165 4.165 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.179 3.821 10 O -0.399 6.399 11 C -0.020 4.020 12 N -0.368 5.368 13 C 0.328 3.672 14 O -0.478 6.478 15 C -0.142 4.142 16 H 0.147 0.853 17 C -0.162 4.162 18 C 0.025 3.975 19 H 0.163 0.837 20 O -0.316 6.316 21 C 0.050 3.950 22 H 0.138 0.862 23 C -0.210 4.210 24 H 0.162 0.838 25 C -0.163 4.163 26 C -0.207 4.207 27 H 0.169 0.831 28 C -0.033 4.033 29 H 0.087 0.913 30 H 0.245 0.755 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.071 0.929 35 H 0.148 0.852 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.509 -8.383 -10.808 14.746 hybrid contribution 0.446 1.546 0.250 1.628 sum -5.064 -6.837 -10.557 13.559 Atomic orbital electron populations 1.69312 1.07137 1.29068 1.50159 1.25737 0.95752 1.02567 0.92481 0.85422 0.78278 0.77912 0.78919 1.19067 1.20699 1.20163 1.21636 0.94186 0.90559 1.52956 0.90821 1.19835 0.85388 0.91474 0.85415 1.86043 1.45591 1.48131 1.60176 1.23362 0.94830 0.91719 0.92131 1.49765 1.42227 1.05201 1.39588 1.20581 0.82735 0.80120 0.83753 1.90613 1.59254 1.41743 1.56238 1.23152 0.94382 0.98949 0.97732 0.85265 1.23386 0.91983 0.98645 1.02191 1.24446 0.92615 0.85791 0.94613 0.83726 1.90109 1.31704 1.56113 1.53688 1.24000 0.91953 0.92581 0.86494 0.86218 1.24309 0.90955 1.07433 0.98343 0.83825 1.23502 0.98375 0.91118 1.03299 1.25020 1.01110 0.99199 0.95351 0.83103 1.24046 1.00748 0.77286 1.01257 0.91276 0.75463 0.93457 0.87844 0.87231 0.92909 0.85151 0.89701 0.88712 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.06 11.01 21.45 0.24 -44.82 16 2 C 0.04 1.69 5.40 84.66 0.46 2.15 16 3 Si 0.97 38.34 29.54 68.60 2.03 40.36 16 4 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 5 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.56 -27.25 8.69 25.60 0.22 -27.03 16 8 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.22 10.52 1.59 -11.12 -0.02 10.50 16 10 O -0.59 -30.75 13.55 -148.98 -2.02 -32.76 16 11 C 0.10 4.58 8.02 83.18 0.67 5.24 16 12 N -0.64 -26.99 3.69 -858.27 -3.16 -30.16 16 13 C 0.54 22.36 7.32 87.66 0.64 23.00 16 14 O -0.60 -29.13 16.69 -3.04 -0.05 -29.19 16 15 C -0.12 -3.75 2.80 -9.24 -0.03 -3.77 16 16 H 0.13 3.29 8.02 -2.38 -0.02 3.27 16 17 C -0.12 -3.55 5.90 32.89 0.19 -3.35 16 18 C 0.08 2.10 5.67 32.55 0.18 2.29 16 19 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 20 O -0.40 -13.34 10.82 -148.98 -1.61 -14.95 16 21 C 0.11 3.16 4.50 32.55 0.15 3.31 16 22 H 0.12 3.77 7.78 -2.39 -0.02 3.76 16 23 C -0.19 -3.86 6.48 -9.13 -0.06 -3.91 16 24 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 25 C -0.13 -2.21 9.98 31.96 0.32 -1.89 16 26 C -0.19 -3.52 6.79 -7.76 -0.05 -3.57 16 27 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 28 C 0.09 3.68 7.85 83.26 0.65 4.34 16 29 H 0.28 12.91 8.31 -92.71 -0.77 12.14 16 30 H 0.39 20.49 6.33 -74.06 -0.47 20.02 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.10 4.15 8.10 -2.39 -0.02 4.13 16 33 H 0.11 2.53 8.03 -2.39 -0.02 2.51 16 34 H 0.05 1.88 7.83 -2.39 -0.02 1.86 16 35 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.79 7.72 -2.39 -0.02 1.77 16 37 H 0.09 3.61 8.10 -2.39 -0.02 3.59 16 38 H 0.07 2.71 7.83 -2.39 -0.02 2.69 16 Total: -1.00 -63.18 314.17 -0.64 -63.83 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: 0.61 Total: 40.39 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 3.33 Total: 7.29 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -2.93 Total: -74.98 kcal Atomic # 8 Polarization: -73.22 SS G_CDS: -3.68 Total: -76.90 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.36 kcal Total: -63.18 -0.64 -63.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333748610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.482 kcal (2) G-P(sol) polarization free energy of solvation -63.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds