Wall clock time and date at job start Fri Apr 10 2020 17:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47292 * 2 1 4 4 N 1.31918 * 119.39951 * 270.23281 * 3 2 1 5 5 C 1.32204 * 121.80455 * 180.26634 * 4 3 2 6 6 O 1.35406 * 119.80746 * 179.74806 * 5 4 3 7 7 C 1.40380 * 120.38857 * 359.76243 * 5 4 3 8 8 C 1.47391 * 120.60236 * 180.02562 * 7 5 4 9 9 O 1.21511 * 120.00247 * 359.97149 * 8 7 5 10 10 O 1.34753 * 120.00050 * 179.97438 * 8 7 5 11 11 C 1.45199 * 116.99957 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.47121 * 329.99988 * 11 10 8 13 13 C 1.52998 * 109.46829 * 89.99743 * 11 10 8 14 14 C 1.50704 * 109.46908 * 209.99627 * 11 10 8 15 15 H 1.07999 * 120.00220 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99702 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00032 * 179.97438 * 16 14 11 18 18 Si 1.86805 * 120.00035 * 0.02562 * 16 14 11 19 19 H 1.48504 * 109.47018 * 89.99916 * 18 16 14 20 20 H 1.48501 * 109.47012 * 209.99465 * 18 16 14 21 21 H 1.48493 * 109.47034 * 330.00126 * 18 16 14 22 22 C 1.40007 * 118.79544 * 359.97438 * 7 5 4 23 23 C 1.38322 * 119.40119 * 89.99558 * 3 2 1 24 24 C 1.50703 * 120.26553 * 0.02562 * 23 3 2 25 25 H 1.09004 * 109.47342 * 60.00200 * 1 2 3 26 26 H 1.08999 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47447 * 299.99788 * 1 2 3 28 28 H 1.09005 * 109.47123 * 240.00238 * 2 1 3 29 29 H 1.08998 * 109.47275 * 120.00244 * 2 1 3 30 30 H 0.96701 * 114.00129 * 270.01669 * 6 5 4 31 31 H 1.09006 * 109.47252 * 179.97438 * 13 11 10 32 32 H 1.08999 * 109.47399 * 299.99808 * 13 11 10 33 33 H 1.09000 * 109.47396 * 60.00044 * 13 11 10 34 34 H 0.96996 * 120.00081 * 180.02562 * 17 16 14 35 35 H 1.07997 * 120.83098 * 180.02562 * 22 7 5 36 36 H 1.09002 * 109.47152 * 269.71794 * 24 23 3 37 37 H 1.09001 * 109.46980 * 149.71895 * 24 23 3 38 38 H 1.09004 * 109.47113 * 29.71876 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2438 2.0329 -1.1493 5 6 2.6888 3.2766 -1.2048 6 8 2.8966 3.8641 -2.4069 7 6 2.9475 3.9915 -0.0247 8 6 3.4432 5.3784 -0.0811 9 8 3.6321 5.9130 -1.1559 10 8 3.6871 6.0537 1.0592 11 6 4.1742 7.4152 0.9278 12 1 4.7512 7.5074 0.0078 13 6 2.9871 8.3795 0.8841 14 6 5.0510 7.7510 2.1066 15 1 5.2252 7.0146 2.8772 16 6 5.6309 8.9983 2.2012 17 7 6.3957 9.2915 3.2301 18 14 5.3291 10.2722 0.8687 19 1 4.1302 11.0769 1.2156 20 1 6.5106 11.1654 0.7611 21 1 5.1066 9.5870 -0.4298 22 6 2.7251 3.3637 1.2067 23 6 2.2586 2.0611 1.2051 24 6 2.0053 1.3433 2.5058 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7886 3.7368 -2.7580 31 1 3.3527 9.4017 0.7859 32 1 2.3529 8.1366 0.0316 33 1 2.4100 8.2873 1.8042 34 1 6.8034 10.1691 3.2969 35 1 2.9127 3.8831 2.1348 36 1 0.9767 1.5166 2.8221 37 1 2.6880 1.7200 3.2675 38 1 2.1681 0.2743 2.3686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343273031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:51 Heat of formation + Delta-G solvation = -96.188049 kcal Electronic energy + Delta-G solvation = -21717.973301 eV Core-core repulsion = 18333.039359 eV Total energy + Delta-G solvation = -3384.933942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.97231 -39.35621 -37.56534 -35.80123 -34.23093 -33.48572 -33.15382 -31.05872 -30.28264 -26.93870 -25.48145 -25.21805 -23.33657 -22.25431 -21.34181 -19.86372 -18.67247 -17.46422 -17.26558 -16.31923 -16.13578 -15.67638 -15.23434 -14.96668 -14.57991 -14.30172 -13.89033 -13.41555 -13.34455 -13.04568 -12.85596 -12.72794 -12.43573 -12.35247 -12.17549 -11.86911 -11.66082 -11.57285 -11.52585 -11.15257 -10.92209 -10.27329 -10.17529 -9.86346 -9.81725 -9.75449 -9.42889 -9.16159 -8.77666 -8.71257 -6.26368 -4.29136 0.47750 1.01984 2.83992 3.16918 3.22285 3.29332 3.31971 3.46579 3.72177 4.23827 4.32002 4.53377 4.60942 4.71924 5.00993 5.02829 5.04961 5.15939 5.25589 5.39411 5.42054 5.56192 5.60919 5.70015 5.77886 5.86779 5.96524 6.06369 6.14221 6.26217 6.34883 6.38987 6.57423 6.97931 7.29678 7.45160 7.47992 7.74790 8.17052 8.52840 8.79345 9.30574 10.85597 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.029538 B = 0.004273 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.693937 B = 6551.309952 C = 7177.746585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C 0.175 3.825 4 N -0.506 5.506 5 C 0.368 3.632 6 O -0.461 6.461 7 C -0.185 4.185 8 C 0.501 3.499 9 O -0.500 6.500 10 O -0.338 6.338 11 C 0.193 3.807 12 H 0.047 0.953 13 C -0.171 4.171 14 C -0.526 4.526 15 H 0.087 0.913 16 C 0.081 3.919 17 N -0.888 5.888 18 Si 0.879 3.121 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.262 1.262 22 C -0.003 4.003 23 C -0.161 4.161 24 C -0.110 4.110 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.405 0.595 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.270 0.730 35 H 0.158 0.842 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.462 -17.874 -3.870 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C 0.037 3.963 4 N -0.225 5.225 5 C 0.188 3.812 6 O -0.268 6.268 7 C -0.190 4.190 8 C 0.343 3.657 9 O -0.390 6.390 10 O -0.254 6.254 11 C 0.139 3.861 12 H 0.065 0.935 13 C -0.228 4.228 14 C -0.564 4.564 15 H 0.105 0.895 16 C -0.123 4.123 17 N -0.524 5.524 18 Si 0.708 3.292 19 H -0.199 1.199 20 H -0.216 1.216 21 H -0.187 1.187 22 C -0.028 4.028 23 C -0.163 4.163 24 C -0.167 4.167 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.265 0.735 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.176 0.824 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.968 -17.712 -4.842 20.893 hybrid contribution 0.566 1.431 -0.112 1.542 sum -9.402 -16.282 -4.954 19.443 Atomic orbital electron populations 1.21695 0.93752 1.02218 1.02624 1.20639 0.96824 0.90318 1.04005 1.21086 0.92232 0.96145 0.86804 1.67126 1.15636 1.09616 1.30105 1.19092 0.90893 0.86306 0.84915 1.84707 1.37316 1.72952 1.31841 1.20508 1.08987 0.94857 0.94608 1.20600 0.75486 0.85978 0.83589 1.90805 1.48462 1.69317 1.30419 1.86553 1.75473 1.30863 1.32492 1.20955 0.92077 0.73208 0.99842 0.93512 1.22529 0.99580 0.99785 1.00886 1.20760 1.28312 1.00592 1.06690 0.89481 1.24719 0.94336 0.97609 0.95613 1.69829 1.31375 1.22253 1.28988 0.86973 0.77278 0.81850 0.83121 1.19948 1.21637 1.18654 1.21912 0.89879 0.92910 0.98123 1.20671 1.03502 0.95213 0.96925 1.20807 1.02726 1.00070 0.93078 0.92177 0.91738 0.92340 0.89729 0.89319 0.73521 0.92461 0.94317 0.91764 0.92014 0.82403 0.90663 0.90750 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.15 0.37 -0.69 16 2 C -0.08 -0.65 5.80 -27.89 -0.16 -0.81 16 3 C 0.18 2.06 6.03 -82.52 -0.50 1.56 16 4 N -0.51 -7.28 10.28 -9.19 -0.09 -7.37 16 5 C 0.37 5.88 7.77 -16.59 -0.13 5.75 16 6 O -0.46 -7.26 11.66 -39.68 -0.46 -7.73 16 7 C -0.18 -3.12 5.90 -104.70 -0.62 -3.74 16 8 C 0.50 10.38 7.87 34.46 0.27 10.65 16 9 O -0.50 -11.32 14.45 -26.56 -0.38 -11.70 16 10 O -0.34 -7.70 9.19 -40.64 -0.37 -8.07 16 11 C 0.19 4.86 2.16 -27.88 -0.06 4.80 16 12 H 0.05 1.24 6.22 -51.93 -0.32 0.92 16 13 C -0.17 -3.92 9.03 37.16 0.34 -3.59 16 14 C -0.53 -14.90 9.48 -34.44 -0.33 -15.23 16 15 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 16 C 0.08 2.29 5.45 -17.82 -0.10 2.20 16 17 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 18 Si 0.88 21.58 24.37 -169.99 -4.14 17.43 16 19 H -0.27 -6.44 6.87 56.52 0.39 -6.05 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 22 C 0.00 -0.04 9.40 -38.87 -0.37 -0.41 16 23 C -0.16 -1.83 5.89 -104.54 -0.62 -2.44 16 24 C -0.11 -0.84 9.61 36.01 0.35 -0.50 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.52 5.90 -51.93 -0.31 0.22 16 30 H 0.41 4.65 9.06 45.56 0.41 5.07 16 31 H 0.06 1.33 3.27 -51.93 -0.17 1.16 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.16 2.12 7.70 -52.49 -0.40 1.72 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.07 0.43 5.91 -51.93 -0.31 0.13 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -33.42 318.22 -5.52 -38.94 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.08 Total: 1.81 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -1.55 Total: -2.45 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.68 Total: -33.04 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.22 Total: -27.50 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.43 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.42 -5.52 -38.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343273031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.244 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds