Wall clock time and date at job start Fri Apr 10 2020 17:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47292 * 2 1 4 4 N 1.31918 * 119.39951 * 270.23281 * 3 2 1 5 5 C 1.32204 * 121.80455 * 180.26634 * 4 3 2 6 6 O 1.35406 * 119.80746 * 179.74806 * 5 4 3 7 7 C 1.40380 * 120.38857 * 359.76243 * 5 4 3 8 8 C 1.47391 * 120.60236 * 180.02562 * 7 5 4 9 9 O 1.21511 * 120.00247 * 359.97149 * 8 7 5 10 10 O 1.34753 * 120.00050 * 179.97438 * 8 7 5 11 11 C 1.45199 * 116.99957 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.47121 * 329.99988 * 11 10 8 13 13 C 1.52998 * 109.46829 * 89.99743 * 11 10 8 14 14 C 1.50704 * 109.46908 * 209.99627 * 11 10 8 15 15 H 1.07999 * 120.00220 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99702 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00032 * 179.97438 * 16 14 11 18 18 Si 1.86805 * 120.00035 * 0.02562 * 16 14 11 19 19 H 1.48504 * 109.47018 * 89.99916 * 18 16 14 20 20 H 1.48501 * 109.47012 * 209.99465 * 18 16 14 21 21 H 1.48493 * 109.47034 * 330.00126 * 18 16 14 22 22 C 1.40007 * 118.79544 * 359.97438 * 7 5 4 23 23 C 1.38322 * 119.40119 * 89.99558 * 3 2 1 24 24 C 1.50703 * 120.26553 * 0.02562 * 23 3 2 25 25 H 1.09004 * 109.47342 * 60.00200 * 1 2 3 26 26 H 1.08999 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47447 * 299.99788 * 1 2 3 28 28 H 1.09005 * 109.47123 * 240.00238 * 2 1 3 29 29 H 1.08998 * 109.47275 * 120.00244 * 2 1 3 30 30 H 0.96701 * 114.00129 * 270.01669 * 6 5 4 31 31 H 1.09006 * 109.47252 * 179.97438 * 13 11 10 32 32 H 1.08999 * 109.47399 * 299.99808 * 13 11 10 33 33 H 1.09000 * 109.47396 * 60.00044 * 13 11 10 34 34 H 0.96996 * 120.00081 * 180.02562 * 17 16 14 35 35 H 1.07997 * 120.83098 * 180.02562 * 22 7 5 36 36 H 1.09002 * 109.47152 * 269.71794 * 24 23 3 37 37 H 1.09001 * 109.46980 * 149.71895 * 24 23 3 38 38 H 1.09004 * 109.47113 * 29.71876 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2438 2.0329 -1.1493 5 6 2.6888 3.2766 -1.2048 6 8 2.8966 3.8641 -2.4069 7 6 2.9475 3.9915 -0.0247 8 6 3.4432 5.3784 -0.0811 9 8 3.6321 5.9130 -1.1559 10 8 3.6871 6.0537 1.0592 11 6 4.1742 7.4152 0.9278 12 1 4.7512 7.5074 0.0078 13 6 2.9871 8.3795 0.8841 14 6 5.0510 7.7510 2.1066 15 1 5.2252 7.0146 2.8772 16 6 5.6309 8.9983 2.2012 17 7 6.3957 9.2915 3.2301 18 14 5.3291 10.2722 0.8687 19 1 4.1302 11.0769 1.2156 20 1 6.5106 11.1654 0.7611 21 1 5.1066 9.5870 -0.4298 22 6 2.7251 3.3637 1.2067 23 6 2.2586 2.0611 1.2051 24 6 2.0053 1.3433 2.5058 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7886 3.7368 -2.7580 31 1 3.3527 9.4017 0.7859 32 1 2.3529 8.1366 0.0316 33 1 2.4100 8.2873 1.8042 34 1 6.8034 10.1691 3.2969 35 1 2.9127 3.8831 2.1348 36 1 0.9767 1.5166 2.8221 37 1 2.6880 1.7200 3.2675 38 1 2.1681 0.2743 2.3686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343273031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:51 Heat of formation + Delta-G solvation = -120.647600 kcal Electronic energy + Delta-G solvation = -21719.033947 eV Core-core repulsion = 18333.039359 eV Total energy + Delta-G solvation = -3385.994587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.17165 -40.93216 -38.72868 -37.54718 -35.43700 -34.99304 -34.42688 -32.76678 -31.52337 -27.78785 -27.39701 -26.44317 -24.69555 -23.20649 -22.77865 -21.48459 -19.85464 -19.23799 -18.67012 -18.02136 -17.72696 -17.02978 -16.74739 -16.32838 -15.88381 -15.14705 -15.10288 -14.78780 -14.67319 -14.33722 -14.27432 -14.04292 -13.74199 -13.55193 -13.44975 -13.16110 -12.95970 -12.88837 -12.71287 -12.27620 -12.25729 -11.86035 -11.74275 -11.70529 -11.52192 -11.28155 -10.99188 -10.85402 -10.61798 -9.78573 -8.46648 -6.55612 -0.69495 -0.05028 1.22471 1.30261 1.39508 1.42075 1.68790 2.17969 2.30595 2.56230 2.86053 3.33991 3.52337 3.61822 3.74612 4.02297 4.19353 4.21996 4.36180 4.36660 4.42772 4.47154 4.55392 4.67240 4.74098 4.79003 4.90966 5.02496 5.10407 5.12954 5.17066 5.25658 5.29796 5.33810 5.52343 5.57013 6.08914 6.41693 6.47900 6.68692 6.76542 7.08886 8.69017 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.029538 B = 0.004273 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.693937 B = 6551.309952 C = 7177.746585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C 0.179 3.821 4 N -0.517 5.517 5 C 0.361 3.639 6 O -0.477 6.477 7 C -0.212 4.212 8 C 0.499 3.501 9 O -0.526 6.526 10 O -0.346 6.346 11 C 0.195 3.805 12 H 0.032 0.968 13 C -0.165 4.165 14 C -0.539 4.539 15 H 0.051 0.949 16 C 0.034 3.966 17 N -0.927 5.927 18 Si 0.937 3.063 19 H -0.251 1.251 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.009 4.009 23 C -0.148 4.148 24 C -0.110 4.110 25 H 0.039 0.961 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.418 0.582 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.276 0.724 35 H 0.158 0.842 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.050 -19.554 -3.932 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C 0.041 3.959 4 N -0.236 5.236 5 C 0.181 3.819 6 O -0.286 6.286 7 C -0.217 4.217 8 C 0.345 3.655 9 O -0.417 6.417 10 O -0.262 6.262 11 C 0.141 3.859 12 H 0.050 0.950 13 C -0.222 4.222 14 C -0.576 4.576 15 H 0.069 0.931 16 C -0.166 4.166 17 N -0.565 5.565 18 Si 0.762 3.238 19 H -0.176 1.176 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.034 4.034 23 C -0.150 4.150 24 C -0.167 4.167 25 H 0.058 0.942 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.138 0.862 30 H 0.280 0.720 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.176 0.824 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.561 -19.412 -4.901 23.120 hybrid contribution 1.051 1.733 -0.032 2.027 sum -10.510 -17.680 -4.933 21.151 Atomic orbital electron populations 1.21701 0.92871 1.03620 1.01894 1.20843 0.97340 0.87714 1.05720 1.21898 0.90197 0.97632 0.86165 1.67258 1.16095 1.08779 1.31479 1.19149 0.91288 0.86869 0.84549 1.84647 1.38579 1.73411 1.32009 1.20357 1.11928 0.93039 0.96361 1.21242 0.74636 0.87120 0.82546 1.90772 1.49831 1.70203 1.30897 1.86537 1.75805 1.29994 1.33854 1.20677 0.92663 0.75139 0.97465 0.95029 1.22426 0.98770 0.98962 1.02020 1.20900 1.29524 1.00265 1.06943 0.93094 1.25503 0.93776 0.99586 0.97758 1.69939 1.32381 1.23265 1.30932 0.86028 0.78247 0.79368 0.80127 1.17609 1.20823 1.18394 1.22038 0.90194 0.94163 0.97024 1.21062 1.01291 0.93968 0.98690 1.20962 1.03774 1.01141 0.90794 0.94223 0.89305 0.91798 0.89484 0.86182 0.71979 0.92386 0.92806 0.90945 0.91447 0.82433 0.88995 0.90434 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 71.98 0.71 -0.89 16 2 C -0.08 -0.98 5.80 29.85 0.17 -0.81 16 3 C 0.18 3.80 6.03 42.57 0.26 4.05 16 4 N -0.52 -14.36 10.28 -296.04 -3.04 -17.40 16 5 C 0.36 11.59 7.77 85.16 0.66 12.25 16 6 O -0.48 -15.33 11.66 -66.18 -0.77 -16.10 16 7 C -0.21 -7.26 5.90 -19.92 -0.12 -7.38 16 8 C 0.50 21.28 7.87 70.23 0.55 21.83 16 9 O -0.53 -24.39 14.45 26.77 0.39 -24.00 16 10 O -0.35 -16.20 9.19 -56.63 -0.52 -16.72 16 11 C 0.19 9.98 2.16 29.85 0.06 10.04 16 12 H 0.03 1.72 6.22 -2.39 -0.01 1.70 16 13 C -0.16 -7.45 9.03 71.98 0.65 -6.80 16 14 C -0.54 -31.45 9.48 25.60 0.24 -31.21 16 15 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 16 C 0.03 1.96 5.45 84.66 0.46 2.42 16 17 N -0.93 -56.19 13.96 21.45 0.30 -55.89 16 18 Si 0.94 44.17 24.37 68.60 1.67 45.84 16 19 H -0.25 -10.93 6.87 99.48 0.68 -10.24 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.26 -12.08 6.53 99.48 0.65 -11.43 16 22 C -0.01 -0.25 9.40 22.73 0.21 -0.04 16 23 C -0.15 -3.03 5.89 -19.81 -0.12 -3.15 16 24 C -0.11 -1.28 9.61 71.24 0.68 -0.59 16 25 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.12 0.79 5.90 -2.39 -0.01 0.77 16 30 H 0.42 9.99 9.06 -74.06 -0.67 9.32 16 31 H 0.06 2.59 3.27 -2.38 -0.01 2.58 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.16 4.26 7.70 -2.91 -0.02 4.24 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.91 8.09 -2.39 -0.02 0.90 16 38 H 0.10 0.66 5.91 -2.38 -0.01 0.64 16 Total: -1.00 -74.07 318.22 2.81 -71.26 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.35 Total: 13.28 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 4.44 Total: -0.27 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -2.74 Total: -73.29 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -0.90 Total: -56.82 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.67 Total: 45.84 kcal Total: -74.07 2.81 -71.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343273031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.387 kcal (2) G-P(sol) polarization free energy of solvation -74.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds