Wall clock time and date at job start Fri Apr 10 2020 17:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46766 * 2 1 4 4 C 1.52992 * 109.47030 * 120.00246 * 2 1 3 5 5 C 1.52999 * 109.47076 * 185.00099 * 4 2 1 6 6 O 1.42900 * 109.47566 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.46912 * 240.00129 * 2 1 3 8 8 C 1.34774 * 120.00244 * 85.00081 * 7 2 1 9 9 O 1.21600 * 119.99694 * 359.97438 * 8 7 2 10 10 C 1.47535 * 120.00237 * 179.97438 * 8 7 2 11 11 C 1.39666 * 120.19977 * 359.97438 * 10 8 7 12 12 C 1.37826 * 119.92252 * 180.02562 * 11 10 8 13 13 C 1.38571 * 120.32201 * 359.97438 * 12 11 10 14 14 C 1.38025 * 120.40291 * 0.02562 * 13 12 11 15 15 C 1.38830 * 120.07198 * 359.97438 * 14 13 12 16 16 O 1.35518 * 120.16236 * 180.02562 * 15 14 13 17 17 C 1.34817 * 117.00226 * 354.39159 * 16 15 14 18 18 H 1.08011 * 119.99389 * 5.05753 * 17 16 15 19 19 C 1.38693 * 120.00626 * 185.05513 * 17 16 15 20 20 N 1.31518 * 120.00332 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99744 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46914 * 89.99836 * 21 19 17 23 23 H 1.48496 * 109.47199 * 209.99917 * 21 19 17 24 24 H 1.48498 * 109.46974 * 330.00017 * 21 19 17 25 25 H 1.08996 * 109.47033 * 300.00129 * 1 2 3 26 26 H 1.08992 * 109.46963 * 60.00010 * 1 2 3 27 27 H 1.08998 * 109.46766 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47199 * 304.99874 * 4 2 1 29 29 H 1.09000 * 109.47750 * 65.00283 * 4 2 1 30 30 H 1.09001 * 109.46922 * 299.99944 * 5 4 2 31 31 H 1.09004 * 109.47128 * 59.99640 * 5 4 2 32 32 H 0.96698 * 114.00572 * 179.97438 * 6 5 4 33 33 H 0.97004 * 120.00291 * 265.00011 * 7 2 1 34 34 H 1.08003 * 120.03718 * 359.97438 * 11 10 8 35 35 H 1.08001 * 119.83467 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.79485 * 180.27518 * 13 12 11 37 37 H 1.08003 * 119.96584 * 180.02562 * 14 13 12 38 38 H 0.96997 * 120.00010 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 8 4.0412 -1.2864 2.4807 7 7 2.0184 -0.6906 -1.1962 8 6 2.1471 -0.0183 -2.3571 9 8 1.8575 1.1615 -2.4118 10 6 2.6393 -0.7136 -3.5616 11 6 2.9737 -2.0684 -3.5034 12 6 3.4335 -2.7122 -4.6320 13 6 3.5657 -2.0219 -5.8263 14 6 3.2391 -0.6828 -5.8989 15 6 2.7744 -0.0179 -4.7722 16 8 2.4527 1.2967 -4.8416 17 6 2.7157 1.9308 -6.0019 18 1 3.0867 1.3737 -6.8496 19 6 2.5097 3.2983 -6.1072 20 7 2.7666 3.9168 -7.2390 21 14 1.8685 4.2618 -4.6409 22 1 3.0131 4.7476 -3.8291 23 1 1.0737 5.4212 -5.1196 24 1 1.0091 3.3824 -3.8083 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -0.2618 2.1369 29 1 1.7518 -1.7716 1.2055 30 1 3.9995 -1.0728 0.4259 31 1 3.8532 0.4370 1.3573 32 1 5.0020 -1.2588 2.5861 33 1 2.2490 -1.6318 -1.1527 34 1 2.8728 -2.6107 -2.5749 35 1 3.6912 -3.7599 -4.5855 36 1 3.9226 -2.5358 -6.7065 37 1 3.3445 -0.1517 -6.8334 38 1 2.6222 4.8732 -7.3127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121506308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:43 Heat of formation + Delta-G solvation = -118.161796 kcal Electronic energy + Delta-G solvation = -21846.748134 eV Core-core repulsion = 18460.861339 eV Total energy + Delta-G solvation = -3385.886795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44975 -40.14660 -38.28921 -38.07056 -36.55635 -34.52568 -33.32134 -31.41892 -30.79203 -29.86070 -27.30615 -25.18619 -24.09987 -23.09128 -21.95469 -21.53411 -19.81339 -19.45917 -18.33105 -17.96141 -17.29046 -16.56071 -16.20411 -16.01654 -15.88231 -15.55387 -15.51915 -15.44916 -15.03011 -14.51527 -14.23583 -14.16159 -14.02821 -13.46548 -13.12194 -12.90893 -12.87879 -12.78780 -12.59112 -12.39434 -12.05784 -12.03367 -11.90991 -11.52455 -10.97666 -10.91921 -10.67875 -10.14081 -9.82608 -9.14656 -8.58465 -6.27165 0.06061 0.65055 1.23835 1.28805 1.57287 2.04453 2.23372 2.28797 2.75746 3.02547 3.16643 3.17903 3.88703 3.97852 4.00442 4.04595 4.21485 4.27541 4.43084 4.47544 4.49382 4.56870 4.61241 4.78364 4.82331 4.87883 5.02937 5.06392 5.15557 5.27690 5.29139 5.47745 5.59740 5.62315 5.69758 5.83577 6.15839 6.66276 6.78907 6.84846 7.42438 7.58807 8.52062 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.015006 B = 0.005924 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.423387 B = 4725.117768 C = 5987.223468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.061 0.939 4 C -0.113 4.113 5 C 0.073 3.927 6 O -0.588 6.588 7 N -0.711 5.711 8 C 0.556 3.444 9 O -0.572 6.572 10 C -0.233 4.233 11 C -0.030 4.030 12 C -0.189 4.189 13 C -0.043 4.043 14 C -0.251 4.251 15 C 0.160 3.840 16 O -0.209 6.209 17 C -0.403 4.403 18 H 0.091 0.909 19 C 0.026 3.974 20 N -0.912 5.912 21 Si 0.956 3.044 22 H -0.276 1.276 23 H -0.266 1.266 24 H -0.266 1.266 25 H 0.082 0.918 26 H 0.028 0.972 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.397 0.603 33 H 0.412 0.588 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.150 0.850 37 H 0.114 0.886 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 -15.906 15.963 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.005 4.005 6 O -0.397 6.397 7 N -0.367 5.367 8 C 0.346 3.654 9 O -0.452 6.452 10 C -0.238 4.238 11 C -0.048 4.048 12 C -0.207 4.207 13 C -0.061 4.061 14 C -0.270 4.270 15 C 0.107 3.893 16 O -0.113 6.113 17 C -0.479 4.479 18 H 0.109 0.891 19 C -0.174 4.174 20 N -0.551 5.551 21 Si 0.780 3.220 22 H -0.202 1.202 23 H -0.191 1.191 24 H -0.190 1.190 25 H 0.101 0.899 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.247 0.753 33 H 0.250 0.750 34 H 0.183 0.817 35 H 0.184 0.816 36 H 0.168 0.832 37 H 0.132 0.868 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.167 -14.801 16.071 21.849 hybrid contribution 0.549 0.898 -0.472 1.153 sum 0.716 -13.903 15.599 20.908 Atomic orbital electron populations 1.22115 0.94450 1.03110 1.01900 1.20873 0.94713 0.96666 0.83746 0.92073 1.21690 0.94277 1.02603 0.96471 1.22160 0.95054 0.95649 0.87598 1.86380 1.29161 1.78670 1.45458 1.45799 1.68146 1.14302 1.08418 1.18365 0.77086 0.86067 0.83887 1.90844 1.51276 1.17740 1.85344 1.19320 1.16706 0.96403 0.91355 1.21351 0.93178 0.90062 1.00243 1.21235 1.05836 1.01756 0.91911 1.21440 0.93392 0.91716 0.99571 1.21329 1.10013 0.97479 0.98223 1.19793 0.91386 0.84006 0.94137 1.83769 1.71979 1.19305 1.36270 1.20892 1.45347 0.92661 0.88970 0.89132 1.25032 0.96351 0.96383 0.99641 1.69682 1.48000 1.11435 1.26028 0.85409 0.79438 0.77977 0.79191 1.20204 1.19085 1.19046 0.89877 0.95258 0.90442 0.88872 0.88950 0.92986 0.94345 0.75328 0.74999 0.81684 0.81595 0.83224 0.86819 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.48 71.98 0.68 -2.90 16 2 C 0.14 3.44 2.57 44.99 0.12 3.56 16 3 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 4 C -0.11 -1.89 5.12 30.59 0.16 -1.73 16 5 C 0.07 1.29 6.93 71.98 0.50 1.79 16 6 O -0.59 -9.72 13.66 -148.98 -2.03 -11.75 16 7 N -0.71 -18.55 4.48 -445.70 -2.00 -20.54 16 8 C 0.56 21.76 7.73 86.70 0.67 22.43 16 9 O -0.57 -29.07 14.83 16.87 0.25 -28.82 16 10 C -0.23 -9.01 5.89 -19.99 -0.12 -9.13 16 11 C -0.03 -0.78 9.53 22.52 0.21 -0.57 16 12 C -0.19 -4.56 10.02 22.25 0.22 -4.34 16 13 C -0.04 -1.30 10.03 22.30 0.22 -1.08 16 14 C -0.25 -10.66 9.16 22.36 0.20 -10.45 16 15 C 0.16 7.71 6.66 22.91 0.15 7.87 16 16 O -0.21 -12.19 6.67 0.83 0.01 -12.19 16 17 C -0.40 -24.68 9.95 67.93 0.68 -24.00 16 18 H 0.09 5.62 5.44 -2.91 -0.02 5.60 16 19 C 0.03 1.59 5.49 84.85 0.47 2.06 16 20 N -0.91 -55.97 13.96 21.62 0.30 -55.67 16 21 Si 0.96 51.07 28.62 68.60 1.96 53.04 16 22 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 23 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.27 -15.28 7.11 99.48 0.71 -14.57 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 0.88 7.75 -2.39 -0.02 0.87 16 31 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.40 3.31 9.12 -74.06 -0.68 2.64 16 33 H 0.41 7.43 6.63 -92.71 -0.61 6.81 16 34 H 0.17 2.60 6.40 -2.91 -0.02 2.59 16 35 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.11 5.31 5.64 -2.91 -0.02 5.29 16 38 H 0.29 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -81.59 323.95 2.47 -79.12 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -0.19 Total: 13.31 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 4.17 Total: -16.50 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -1.69 Total: -76.21 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -1.78 Total: -52.76 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 1.96 Total: 53.04 kcal Total: -81.59 2.47 -79.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121506308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.037 kcal (2) G-P(sol) polarization free energy of solvation -81.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds