Wall clock time and date at job start Fri Apr 10 2020 17:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35967 * 116.99913 * 2 1 4 4 C 1.38733 * 119.99337 * 0.02562 * 3 2 1 5 5 C 1.38031 * 120.08114 * 179.97438 * 4 3 2 6 6 C 1.39181 * 120.06091 * 359.97438 * 5 4 3 7 7 N 1.39435 * 120.00771 * 180.02562 * 6 5 4 8 8 C 1.34780 * 120.00246 * 215.22518 * 7 6 5 9 9 O 1.21785 * 119.99573 * 355.81048 * 8 7 6 10 10 C 1.41698 * 120.00281 * 175.80562 * 8 7 6 11 11 H 1.07996 * 120.00256 * 0.02562 * 10 8 7 12 12 C 1.40142 * 120.00194 * 180.02562 * 10 8 7 13 13 N 1.30639 * 119.99683 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00249 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47168 * 89.99983 * 14 12 10 16 16 H 1.48500 * 109.46645 * 210.00168 * 14 12 10 17 17 H 1.48497 * 109.46864 * 329.99878 * 14 12 10 18 18 C 1.39065 * 119.98328 * 359.78691 * 6 5 4 19 19 C 1.38359 * 119.92223 * 0.46305 * 18 6 5 20 20 O 1.35962 * 120.03039 * 179.78967 * 19 18 6 21 21 C 1.42896 * 117.00239 * 4.45027 * 20 19 18 22 22 C 1.53002 * 109.47248 * 204.06764 * 21 20 19 23 23 C 1.53002 * 109.47091 * 84.07430 * 21 20 19 24 24 H 1.08999 * 109.46883 * 60.00203 * 1 2 3 25 25 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46839 * 300.00057 * 1 2 3 27 27 H 1.08003 * 119.95898 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.97321 * 179.97438 * 5 4 3 29 29 H 0.96999 * 120.00266 * 35.22801 * 7 6 5 30 30 H 0.96994 * 119.99564 * 179.97438 * 13 12 10 31 31 H 1.08000 * 120.03973 * 180.25697 * 18 6 5 32 32 H 1.08994 * 109.47266 * 324.06997 * 21 20 19 33 33 H 1.08994 * 109.47177 * 300.00287 * 22 21 20 34 34 H 1.09002 * 109.47053 * 180.02562 * 22 21 20 35 35 H 1.09006 * 109.46896 * 60.00245 * 22 21 20 36 36 H 1.08994 * 109.47420 * 59.99660 * 23 21 20 37 37 H 1.08993 * 109.47269 * 180.02562 * 23 21 20 38 38 H 1.09004 * 109.46453 * 300.00038 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2906 2.3749 0.0005 5 6 1.9153 3.6057 0.0011 6 6 3.3051 3.6822 0.0016 7 7 3.9350 4.9261 0.0027 8 6 5.0903 5.0971 -0.6700 9 8 5.6237 4.1476 -1.2151 10 6 5.6843 6.3815 -0.7432 11 1 5.2114 7.2235 -0.2596 12 6 6.8853 6.5593 -1.4431 13 7 7.4570 5.5410 -2.0285 14 14 7.6687 8.2524 -1.5390 15 1 8.5975 8.4336 -0.3947 16 1 8.4218 8.3779 -2.8127 17 1 6.6092 9.2917 -1.4860 18 6 4.0652 2.5177 0.0061 19 6 3.4382 1.2843 0.0003 20 8 4.1793 0.1443 0.0004 21 6 5.5967 0.2919 0.1053 22 6 6.2832 -0.9377 -0.4927 23 6 5.9876 0.4282 1.5783 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2121 2.3175 0.0014 28 1 1.3253 4.5103 0.0011 29 1 3.5418 5.6685 0.4876 30 1 8.2881 5.6642 -2.5133 31 1 5.1436 2.5760 0.0107 32 1 5.9104 1.1833 -0.4378 33 1 5.9695 -1.8291 0.0504 34 1 7.3644 -0.8253 -0.4123 35 1 6.0047 -1.0348 -1.5422 36 1 5.6739 -0.4632 2.1214 37 1 7.0687 0.5412 1.6583 38 1 5.4985 1.3042 2.0043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125239147.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:55 Heat of formation + Delta-G solvation = -88.016613 kcal Electronic energy + Delta-G solvation = -22047.046040 eV Core-core repulsion = 18662.466439 eV Total energy + Delta-G solvation = -3384.579601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.14913 -38.25950 -38.16653 -35.97114 -33.30736 -32.67766 -32.18127 -29.57748 -28.65559 -27.17638 -26.88308 -25.94674 -22.95411 -21.83877 -20.46120 -19.88326 -18.10400 -17.54056 -16.86116 -15.95181 -15.58017 -15.38131 -15.24303 -14.73192 -14.28719 -14.21629 -13.95458 -13.23672 -12.97608 -12.80740 -12.46521 -12.32533 -12.27076 -12.01434 -11.79781 -11.59064 -11.40522 -11.27864 -11.16744 -10.77308 -10.72567 -10.62924 -10.46482 -10.36152 -10.07145 -9.10041 -8.67271 -7.91618 -7.60460 -6.74595 -6.39453 -4.92472 1.92757 2.06303 3.03257 3.10919 3.14210 3.66437 3.70439 3.96096 4.21872 4.48711 4.68950 5.14526 5.19469 5.26165 5.32735 5.35597 5.50702 5.52279 5.60980 5.67426 5.79703 5.86635 5.95842 5.97185 6.05383 6.18941 6.28254 6.34884 6.45936 6.55048 6.76421 7.07108 7.18417 7.23671 7.57567 7.85246 7.99023 8.06646 8.26460 8.78159 9.28482 10.36056 10.56738 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.019223 B = 0.005209 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.240462 B = 5374.089247 C = 6513.466082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.313 6.313 3 C 0.045 3.955 4 C -0.150 4.150 5 C -0.178 4.178 6 C 0.198 3.802 7 N -0.701 5.701 8 C 0.545 3.455 9 O -0.569 6.569 10 C -0.538 4.538 11 H 0.070 0.930 12 C 0.089 3.911 13 N -0.748 5.748 14 Si 0.912 3.088 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.263 1.263 18 C -0.186 4.186 19 C 0.122 3.878 20 O -0.304 6.304 21 C 0.068 3.932 22 C -0.142 4.142 23 C -0.173 4.173 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.048 0.952 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.392 0.608 30 H 0.272 0.728 31 H 0.161 0.839 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 -6.808 5.140 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.227 6.227 3 C 0.000 4.000 4 C -0.170 4.170 5 C -0.200 4.200 6 C 0.099 3.901 7 N -0.345 5.345 8 C 0.354 3.646 9 O -0.453 6.453 10 C -0.574 4.574 11 H 0.088 0.912 12 C -0.134 4.134 13 N -0.375 5.375 14 Si 0.736 3.264 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.208 4.208 19 C 0.076 3.924 20 O -0.219 6.219 21 C 0.012 3.988 22 C -0.199 4.199 23 C -0.230 4.230 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.066 0.934 27 H 0.144 0.856 28 H 0.138 0.862 29 H 0.225 0.775 30 H 0.083 0.917 31 H 0.178 0.822 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.848 -7.870 4.583 11.394 hybrid contribution -0.027 1.670 0.140 1.676 sum -6.874 -6.200 4.724 10.393 Atomic orbital electron populations 1.22904 0.79938 1.02932 1.00698 1.86105 1.19833 1.26534 1.90250 1.18099 0.88943 0.84660 1.08298 1.20629 0.98835 0.91196 1.06323 1.20615 0.92996 0.97115 1.09247 1.17630 0.90431 0.86960 0.95092 1.44083 1.27149 1.08787 1.54455 1.17038 0.78370 0.90711 0.78510 1.90620 1.62212 1.42767 1.49654 1.20029 1.07892 0.94378 1.35068 0.91195 1.25753 0.96365 0.98059 0.93241 1.70008 1.14406 1.30910 1.22171 0.86292 0.79546 0.82234 0.78313 1.19503 1.20239 1.18700 1.21475 1.02383 0.89365 1.07536 1.18102 0.87700 0.86073 1.00523 1.86118 1.18729 1.28640 1.88375 1.22482 0.78985 1.00592 0.96780 1.21783 0.99845 0.96833 1.01468 1.22287 1.01939 1.02537 0.96256 0.93291 0.89077 0.93350 0.85595 0.86195 0.77458 0.91668 0.82199 0.89347 0.92069 0.90799 0.91834 0.92126 0.91299 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.31 -5.34 10.28 -34.17 -0.35 -5.69 16 3 C 0.05 0.85 6.71 -38.97 -0.26 0.58 16 4 C -0.15 -2.50 9.03 -39.47 -0.36 -2.86 16 5 C -0.18 -3.20 9.97 -39.31 -0.39 -3.59 16 6 C 0.20 4.25 6.29 -83.74 -0.53 3.73 16 7 N -0.70 -15.77 5.30 -12.43 -0.07 -15.84 16 8 C 0.54 14.91 7.40 -14.94 -0.11 14.80 16 9 O -0.57 -17.36 12.33 5.11 0.06 -17.30 16 10 C -0.54 -14.44 9.31 -37.55 -0.35 -14.79 16 11 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 12 C 0.09 2.35 5.50 -17.34 -0.10 2.25 16 13 N -0.75 -21.18 11.73 55.56 0.65 -20.53 16 14 Si 0.91 19.08 29.56 -169.99 -5.02 14.06 16 15 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 18 C -0.19 -4.13 7.08 -39.23 -0.28 -4.41 16 19 C 0.12 2.51 6.57 -39.11 -0.26 2.26 16 20 O -0.30 -5.98 9.59 -34.15 -0.33 -6.31 16 21 C 0.07 1.18 2.87 -26.73 -0.08 1.10 16 22 C -0.14 -2.01 9.56 37.16 0.36 -1.65 16 23 C -0.17 -2.65 9.31 37.16 0.35 -2.31 16 24 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 27 H 0.13 1.65 6.29 -52.48 -0.33 1.32 16 28 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.39 7.51 8.78 -40.82 -0.36 7.16 16 30 H 0.27 6.97 8.29 -40.82 -0.34 6.64 16 31 H 0.16 3.90 3.95 -52.49 -0.21 3.70 16 32 H 0.09 1.79 5.89 -51.93 -0.31 1.49 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.04 7.53 -51.93 -0.39 0.64 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -33.01 320.31 -6.13 -39.14 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.89 Total: 11.18 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.01 Total: -3.54 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.59 Total: -36.36 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.62 Total: -29.31 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.01 -6.13 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125239147.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.872 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds