Wall clock time and date at job start Fri Apr 10 2020 17:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35967 * 116.99913 * 2 1 4 4 C 1.38733 * 119.99337 * 0.02562 * 3 2 1 5 5 C 1.38031 * 120.08114 * 179.97438 * 4 3 2 6 6 C 1.39181 * 120.06091 * 359.97438 * 5 4 3 7 7 N 1.39435 * 120.00771 * 180.02562 * 6 5 4 8 8 C 1.34780 * 120.00246 * 215.22518 * 7 6 5 9 9 O 1.21785 * 119.99573 * 355.81048 * 8 7 6 10 10 C 1.41698 * 120.00281 * 175.80562 * 8 7 6 11 11 H 1.07996 * 120.00256 * 0.02562 * 10 8 7 12 12 C 1.40142 * 120.00194 * 180.02562 * 10 8 7 13 13 N 1.30639 * 119.99683 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00249 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47168 * 89.99983 * 14 12 10 16 16 H 1.48500 * 109.46645 * 210.00168 * 14 12 10 17 17 H 1.48497 * 109.46864 * 329.99878 * 14 12 10 18 18 C 1.39065 * 119.98328 * 359.78691 * 6 5 4 19 19 C 1.38359 * 119.92223 * 0.46305 * 18 6 5 20 20 O 1.35962 * 120.03039 * 179.78967 * 19 18 6 21 21 C 1.42896 * 117.00239 * 4.45027 * 20 19 18 22 22 C 1.53002 * 109.47248 * 204.06764 * 21 20 19 23 23 C 1.53002 * 109.47091 * 84.07430 * 21 20 19 24 24 H 1.08999 * 109.46883 * 60.00203 * 1 2 3 25 25 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46839 * 300.00057 * 1 2 3 27 27 H 1.08003 * 119.95898 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.97321 * 179.97438 * 5 4 3 29 29 H 0.96999 * 120.00266 * 35.22801 * 7 6 5 30 30 H 0.96994 * 119.99564 * 179.97438 * 13 12 10 31 31 H 1.08000 * 120.03973 * 180.25697 * 18 6 5 32 32 H 1.08994 * 109.47266 * 324.06997 * 21 20 19 33 33 H 1.08994 * 109.47177 * 300.00287 * 22 21 20 34 34 H 1.09002 * 109.47053 * 180.02562 * 22 21 20 35 35 H 1.09006 * 109.46896 * 60.00245 * 22 21 20 36 36 H 1.08994 * 109.47420 * 59.99660 * 23 21 20 37 37 H 1.08993 * 109.47269 * 180.02562 * 23 21 20 38 38 H 1.09004 * 109.46453 * 300.00038 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2906 2.3749 0.0005 5 6 1.9153 3.6057 0.0011 6 6 3.3051 3.6822 0.0016 7 7 3.9350 4.9261 0.0027 8 6 5.0903 5.0971 -0.6700 9 8 5.6237 4.1476 -1.2151 10 6 5.6843 6.3815 -0.7432 11 1 5.2114 7.2235 -0.2596 12 6 6.8853 6.5593 -1.4431 13 7 7.4570 5.5410 -2.0285 14 14 7.6687 8.2524 -1.5390 15 1 8.5975 8.4336 -0.3947 16 1 8.4218 8.3779 -2.8127 17 1 6.6092 9.2917 -1.4860 18 6 4.0652 2.5177 0.0061 19 6 3.4382 1.2843 0.0003 20 8 4.1793 0.1443 0.0004 21 6 5.5967 0.2919 0.1053 22 6 6.2832 -0.9377 -0.4927 23 6 5.9876 0.4282 1.5783 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2121 2.3175 0.0014 28 1 1.3253 4.5103 0.0011 29 1 3.5418 5.6685 0.4876 30 1 8.2881 5.6642 -2.5133 31 1 5.1436 2.5760 0.0107 32 1 5.9104 1.1833 -0.4378 33 1 5.9695 -1.8291 0.0504 34 1 7.3644 -0.8253 -0.4123 35 1 6.0047 -1.0348 -1.5422 36 1 5.6739 -0.4632 2.1214 37 1 7.0687 0.5412 1.6583 38 1 5.4985 1.3042 2.0043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125239147.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:55 Heat of formation + Delta-G solvation = -110.708059 kcal Electronic energy + Delta-G solvation = -22048.030015 eV Core-core repulsion = 18662.466439 eV Total energy + Delta-G solvation = -3385.563576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.63497 -39.96276 -39.59849 -37.62246 -35.06264 -34.43079 -33.85183 -31.09266 -30.19513 -28.64593 -28.17321 -27.46577 -24.40572 -23.47394 -22.03451 -21.51398 -19.64513 -19.29912 -18.32246 -17.74096 -17.07629 -16.96508 -16.70047 -16.06698 -15.86762 -15.58152 -15.55897 -14.80134 -14.62539 -14.40618 -13.94947 -13.74180 -13.59811 -13.26085 -13.18270 -13.08754 -12.88355 -12.74868 -12.71866 -12.64689 -12.09282 -12.02981 -11.94971 -11.84719 -11.53072 -10.99352 -10.36971 -9.87963 -9.33155 -8.39930 -8.30864 -7.00868 0.43414 0.51784 1.39719 1.39986 1.56317 2.20642 2.26579 2.36102 2.49266 2.82691 3.01541 3.64182 3.83600 3.93115 3.99298 4.12235 4.17147 4.32904 4.46335 4.50372 4.53567 4.64512 4.72310 4.76518 4.77901 4.80941 4.90259 5.03176 5.14450 5.20789 5.22146 5.31893 5.50837 5.67062 5.88978 6.17019 6.22630 6.35584 6.73812 6.74783 7.42176 8.39286 8.57396 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.019223 B = 0.005209 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.240462 B = 5374.089247 C = 6513.466082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.049 3.951 4 C -0.138 4.138 5 C -0.163 4.163 6 C 0.161 3.839 7 N -0.693 5.693 8 C 0.529 3.471 9 O -0.613 6.613 10 C -0.565 4.565 11 H 0.091 0.909 12 C 0.033 3.967 13 N -0.801 5.801 14 Si 1.000 3.000 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.248 1.248 18 C -0.204 4.204 19 C 0.100 3.900 20 O -0.313 6.313 21 C 0.063 3.937 22 C -0.136 4.136 23 C -0.164 4.164 24 H 0.062 0.938 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.173 0.827 28 H 0.153 0.847 29 H 0.407 0.593 30 H 0.278 0.722 31 H 0.127 0.873 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 -6.274 5.826 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.004 3.996 4 C -0.157 4.157 5 C -0.184 4.184 6 C 0.063 3.937 7 N -0.338 5.338 8 C 0.338 3.662 9 O -0.500 6.500 10 C -0.600 4.600 11 H 0.109 0.891 12 C -0.185 4.185 13 N -0.429 5.429 14 Si 0.819 3.181 15 H -0.185 1.185 16 H -0.197 1.197 17 H -0.171 1.171 18 C -0.226 4.226 19 C 0.054 3.946 20 O -0.228 6.228 21 C 0.007 3.993 22 C -0.193 4.193 23 C -0.221 4.221 24 H 0.080 0.920 25 H 0.134 0.866 26 H 0.086 0.914 27 H 0.190 0.810 28 H 0.170 0.830 29 H 0.243 0.757 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.911 -7.348 5.304 12.709 hybrid contribution 0.435 1.346 -0.042 1.416 sum -8.475 -6.001 5.262 11.642 Atomic orbital electron populations 1.23327 0.76784 1.05311 1.02201 1.86088 1.23061 1.25696 1.89876 1.18305 0.88413 0.86179 1.06737 1.21093 1.00900 0.89663 1.04063 1.20939 0.91374 0.99118 1.06957 1.17940 0.92085 0.86036 0.97638 1.43626 1.26158 1.09906 1.54147 1.17422 0.79455 0.90690 0.78602 1.90593 1.63866 1.43995 1.51583 1.20557 1.08815 0.94861 1.35724 0.89119 1.26999 0.96559 1.02924 0.91998 1.70168 1.15250 1.34111 1.23346 0.84978 0.78597 0.75960 0.78567 1.18470 1.19722 1.17100 1.21270 1.01110 0.90941 1.09282 1.18320 0.89069 0.85630 1.01626 1.86084 1.19588 1.28531 1.88571 1.22622 0.78404 1.00482 0.97829 1.21792 1.00632 0.95848 1.00987 1.22218 1.02669 1.02388 0.94874 0.91951 0.86560 0.91432 0.81013 0.82967 0.75746 0.91158 0.85566 0.93526 0.90127 0.88913 0.92521 0.90105 0.89818 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -10.68 10.28 -79.28 -0.81 -11.49 16 3 C 0.05 1.79 6.71 22.66 0.15 1.95 16 4 C -0.14 -4.21 9.03 22.34 0.20 -4.00 16 5 C -0.16 -5.55 9.97 22.45 0.22 -5.33 16 6 C 0.16 7.07 6.29 38.36 0.24 7.31 16 7 N -0.69 -32.14 5.30 -311.41 -1.65 -33.79 16 8 C 0.53 30.33 7.40 85.10 0.63 30.96 16 9 O -0.61 -40.03 12.33 -4.62 -0.06 -40.08 16 10 C -0.56 -30.96 9.31 23.59 0.22 -30.74 16 11 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 12 C 0.03 1.80 5.50 85.33 0.47 2.26 16 13 N -0.80 -47.28 11.73 21.85 0.26 -47.02 16 14 Si 1.00 39.20 29.56 68.60 2.03 41.23 16 15 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 16 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 17 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 18 C -0.20 -9.66 7.08 22.50 0.16 -9.50 16 19 C 0.10 4.24 6.57 22.57 0.15 4.39 16 20 O -0.31 -12.81 9.59 -79.23 -0.76 -13.57 16 21 C 0.06 2.32 2.87 30.60 0.09 2.40 16 22 C -0.14 -3.88 9.56 71.98 0.69 -3.19 16 23 C -0.16 -5.25 9.31 71.98 0.67 -4.58 16 24 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 25 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 27 H 0.17 3.60 6.29 -2.91 -0.02 3.59 16 28 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.41 15.70 8.78 -92.71 -0.81 14.89 16 30 H 0.28 14.82 8.29 -92.71 -0.77 14.05 16 31 H 0.13 6.82 3.95 -2.91 -0.01 6.81 16 32 H 0.05 2.11 5.89 -2.39 -0.01 2.10 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.04 1.43 7.53 -2.38 -0.02 1.41 16 Total: -1.00 -77.11 320.31 4.28 -72.82 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: 0.28 Total: 38.52 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.00 Total: -6.61 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -1.40 Total: -80.82 kcal Atomic # 8 Polarization: -63.51 SS G_CDS: -1.63 Total: -65.14 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -77.11 4.28 -72.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125239147.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.884 kcal (2) G-P(sol) polarization free energy of solvation -77.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds