Wall clock time and date at job start Fri Apr 10 2020 17:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47279 * 2 1 4 4 O 1.45199 * 109.46977 * 120.00014 * 2 1 3 5 5 C 1.34639 * 117.00270 * 90.00211 * 4 2 1 6 6 O 1.21389 * 119.99520 * 359.97438 * 5 4 2 7 7 C 1.48373 * 120.00449 * 179.97438 * 5 4 2 8 8 C 1.41174 * 120.54178 * 0.24387 * 7 5 4 9 9 C 1.35265 * 119.87201 * 180.24629 * 8 7 5 10 10 N 1.35703 * 121.00185 * 359.47518 * 9 8 7 11 11 C 1.46499 * 119.43194 * 180.27563 * 10 9 8 12 12 C 1.53000 * 109.46882 * 90.00856 * 11 10 9 13 13 C 1.50703 * 109.47037 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00028 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00093 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99862 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00240 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47300 * 89.99636 * 17 15 13 19 19 H 1.48501 * 109.47294 * 209.99413 * 17 15 13 20 20 H 1.48499 * 109.46883 * 329.99774 * 17 15 13 21 21 C 1.34597 * 121.13052 * 0.30497 * 10 9 8 22 22 O 1.22001 * 119.96202 * 179.97438 * 21 10 9 23 23 C 1.38324 * 120.54490 * 179.97438 * 7 5 4 24 24 H 1.08996 * 109.47327 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47099 * 300.00099 * 1 2 3 26 26 H 1.09000 * 109.47296 * 59.99416 * 1 2 3 27 27 H 1.09001 * 109.47099 * 239.99901 * 2 1 3 28 28 H 1.09006 * 109.47404 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47434 * 300.00499 * 3 2 1 30 30 H 1.09001 * 109.47136 * 59.99924 * 3 2 1 31 31 H 1.08009 * 120.06691 * 0.02591 * 8 7 5 32 32 H 1.08002 * 119.50246 * 179.76060 * 9 8 7 33 33 H 1.09003 * 109.46944 * 210.00570 * 11 10 9 34 34 H 1.09001 * 109.47673 * 330.00368 * 11 10 9 35 35 H 1.09003 * 109.47098 * 299.99620 * 12 11 10 36 36 H 1.08994 * 109.47752 * 59.99849 * 12 11 10 37 37 H 0.97002 * 119.99704 * 180.02562 * 16 15 13 38 38 H 1.08005 * 120.49323 * 0.02808 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2177 -2.0116 1.0849 6 8 1.9970 -2.5816 0.0361 7 6 2.7121 -2.7772 2.2557 8 6 2.9678 -2.1268 3.4823 9 6 3.4230 -2.8372 4.5395 10 7 3.6302 -4.1750 4.4456 11 6 4.1182 -4.9116 5.6141 12 6 2.9281 -5.4081 6.4376 13 6 3.4301 -6.1664 7.6393 14 1 4.4917 -6.2829 7.7994 15 6 2.5340 -6.7123 8.5337 16 7 1.2411 -6.5707 8.3384 17 14 3.1562 -7.6528 10.0229 18 1 3.3390 -6.7151 11.1597 19 1 2.1689 -8.6973 10.3966 20 1 4.4553 -8.2938 9.6961 21 6 3.3955 -4.8366 3.2972 22 8 3.5895 -6.0395 3.2364 23 6 2.9249 -4.1410 2.1648 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.8035 -1.0633 3.5753 32 1 3.6202 -2.3328 5.4739 33 1 4.7125 -5.7637 5.2842 34 1 4.7349 -4.2540 6.2268 35 1 2.3338 -4.5559 6.7675 36 1 2.3114 -6.0657 5.8251 37 1 0.6107 -6.9545 8.9679 38 1 2.7340 -4.6650 1.2399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161001723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:40 Heat of formation + Delta-G solvation = -100.483757 kcal Electronic energy + Delta-G solvation = -21084.929816 eV Core-core repulsion = 17699.809599 eV Total energy + Delta-G solvation = -3385.120217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23012 -40.40438 -37.11967 -36.60687 -34.96303 -33.42904 -32.92083 -30.22185 -29.55333 -27.62111 -26.42015 -24.48275 -23.22989 -22.23358 -21.20810 -20.60773 -18.37424 -17.37505 -16.94998 -16.73643 -16.20946 -15.98416 -15.36260 -15.25045 -14.54819 -14.46790 -14.12132 -13.97123 -13.46794 -13.16512 -12.86370 -12.63764 -12.51478 -12.43891 -12.07708 -11.93886 -11.89115 -11.41754 -11.22531 -11.02268 -10.90755 -10.85056 -10.71200 -10.30116 -10.16651 -9.73981 -9.46912 -9.30618 -8.47922 -7.73011 -6.12269 -4.17233 0.42269 1.75932 2.35503 2.57463 3.02631 3.26188 3.33443 3.36920 3.84891 4.35423 4.37447 4.45928 4.58301 4.74711 4.80550 4.93617 5.14952 5.19314 5.24398 5.29862 5.38227 5.42846 5.47099 5.68893 5.80319 5.82935 5.88141 6.09634 6.14319 6.16831 6.24832 6.49284 6.64525 7.28183 7.45791 7.55831 7.60855 7.83365 8.17239 8.30350 8.87927 9.47791 10.99065 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.033200 B = 0.003219 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.183387 B = 8695.147849 C = 8944.864022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.080 3.920 3 C -0.149 4.149 4 O -0.343 6.343 5 C 0.511 3.489 6 O -0.498 6.498 7 C -0.023 4.023 8 C -0.227 4.227 9 C 0.154 3.846 10 N -0.478 5.478 11 C 0.087 3.913 12 C 0.014 3.986 13 C -0.526 4.526 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.898 3.102 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.508 3.492 22 O -0.533 6.533 23 C -0.168 4.168 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.153 0.847 32 H 0.168 0.832 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.021 0.979 36 H 0.027 0.973 37 H 0.263 0.737 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 17.544 -13.293 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.025 3.975 3 C -0.206 4.206 4 O -0.260 6.260 5 C 0.355 3.645 6 O -0.386 6.386 7 C -0.028 4.028 8 C -0.250 4.250 9 C 0.024 3.976 10 N -0.186 5.186 11 C -0.033 4.033 12 C -0.024 4.024 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.726 3.274 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C 0.308 3.692 22 O -0.414 6.414 23 C -0.191 4.191 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.170 0.830 32 H 0.186 0.814 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.695 16.528 -13.559 21.445 hybrid contribution 0.010 -0.407 0.715 0.823 sum 1.706 16.121 -12.844 20.682 Atomic orbital electron populations 1.22227 0.94138 1.03341 1.03181 1.22786 0.94772 0.93076 0.86866 1.21893 1.02187 0.93304 1.03260 1.86612 1.76911 1.21379 1.41063 1.21338 0.74320 0.81140 0.87733 1.90811 1.47622 1.70158 1.29993 1.19502 0.98330 0.92882 0.92106 1.20542 1.11339 1.01460 0.91654 1.21998 0.92443 0.83322 0.99824 1.46026 1.50543 1.07816 1.14187 1.22627 1.00567 0.96605 0.83462 1.19419 0.91808 0.96951 0.94191 1.20978 0.93163 1.34973 1.07341 0.92198 1.25003 0.94807 0.96078 0.98295 1.69968 1.01062 1.45001 1.36813 0.86493 0.78744 0.79658 0.82534 1.20539 1.21093 1.19702 1.16908 0.81353 0.88120 0.82804 1.90991 1.53643 1.13231 1.83487 1.22791 1.03361 0.92851 1.00121 0.91795 0.91292 0.90669 0.89626 0.91574 0.90344 0.91192 0.82952 0.81443 0.88881 0.89845 0.96026 0.95437 0.92718 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.55 37.16 0.35 -1.02 16 2 C 0.08 0.71 3.19 -26.73 -0.09 0.63 16 3 C -0.15 -0.92 9.57 37.16 0.36 -0.56 16 4 O -0.34 -3.88 9.21 -40.33 -0.37 -4.25 16 5 C 0.51 6.94 7.90 34.90 0.28 7.22 16 6 O -0.50 -7.76 15.65 -19.18 -0.30 -8.06 16 7 C -0.02 -0.33 5.91 -104.58 -0.62 -0.94 16 8 C -0.23 -2.75 9.59 -39.53 -0.38 -3.13 16 9 C 0.15 2.04 10.25 -16.90 -0.17 1.86 16 10 N -0.48 -8.33 2.58 -119.70 -0.31 -8.64 16 11 C 0.09 1.69 5.25 -4.04 -0.02 1.67 16 12 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 13 C -0.53 -14.30 9.11 -34.44 -0.31 -14.61 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 17 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 21 C 0.51 9.84 7.42 -15.30 -0.11 9.73 16 22 O -0.53 -12.45 16.61 4.92 0.08 -12.37 16 23 C -0.17 -2.76 9.61 -38.51 -0.37 -3.13 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.83 7.16 -51.93 -0.37 0.45 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.15 1.43 7.69 -52.48 -0.40 1.03 16 32 H 0.17 1.67 8.02 -52.49 -0.42 1.25 16 33 H 0.09 1.95 7.37 -51.93 -0.38 1.56 16 34 H 0.08 1.37 8.00 -51.93 -0.42 0.96 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 38 H 0.16 2.53 7.69 -52.48 -0.40 2.13 16 LS Contribution 333.43 15.07 5.02 5.02 Total: -1.00 -33.44 333.43 -6.81 -40.25 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.32 Total: -2.01 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.33 Total: -0.50 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.43 Total: -34.22 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.59 Total: -24.68 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.44 -6.81 -40.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161001723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.230 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds