Wall clock time and date at job start Fri Apr 10 2020 17:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47279 * 2 1 4 4 O 1.45199 * 109.46977 * 120.00014 * 2 1 3 5 5 C 1.34639 * 117.00270 * 90.00211 * 4 2 1 6 6 O 1.21389 * 119.99520 * 359.97438 * 5 4 2 7 7 C 1.48373 * 120.00449 * 179.97438 * 5 4 2 8 8 C 1.41174 * 120.54178 * 0.24387 * 7 5 4 9 9 C 1.35265 * 119.87201 * 180.24629 * 8 7 5 10 10 N 1.35703 * 121.00185 * 359.47518 * 9 8 7 11 11 C 1.46499 * 119.43194 * 180.27563 * 10 9 8 12 12 C 1.53000 * 109.46882 * 90.00856 * 11 10 9 13 13 C 1.50703 * 109.47037 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00028 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00093 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99862 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00240 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47300 * 89.99636 * 17 15 13 19 19 H 1.48501 * 109.47294 * 209.99413 * 17 15 13 20 20 H 1.48499 * 109.46883 * 329.99774 * 17 15 13 21 21 C 1.34597 * 121.13052 * 0.30497 * 10 9 8 22 22 O 1.22001 * 119.96202 * 179.97438 * 21 10 9 23 23 C 1.38324 * 120.54490 * 179.97438 * 7 5 4 24 24 H 1.08996 * 109.47327 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47099 * 300.00099 * 1 2 3 26 26 H 1.09000 * 109.47296 * 59.99416 * 1 2 3 27 27 H 1.09001 * 109.47099 * 239.99901 * 2 1 3 28 28 H 1.09006 * 109.47404 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47434 * 300.00499 * 3 2 1 30 30 H 1.09001 * 109.47136 * 59.99924 * 3 2 1 31 31 H 1.08009 * 120.06691 * 0.02591 * 8 7 5 32 32 H 1.08002 * 119.50246 * 179.76060 * 9 8 7 33 33 H 1.09003 * 109.46944 * 210.00570 * 11 10 9 34 34 H 1.09001 * 109.47673 * 330.00368 * 11 10 9 35 35 H 1.09003 * 109.47098 * 299.99620 * 12 11 10 36 36 H 1.08994 * 109.47752 * 59.99849 * 12 11 10 37 37 H 0.97002 * 119.99704 * 180.02562 * 16 15 13 38 38 H 1.08005 * 120.49323 * 0.02808 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2177 -2.0116 1.0849 6 8 1.9970 -2.5816 0.0361 7 6 2.7121 -2.7772 2.2557 8 6 2.9678 -2.1268 3.4823 9 6 3.4230 -2.8372 4.5395 10 7 3.6302 -4.1750 4.4456 11 6 4.1182 -4.9116 5.6141 12 6 2.9281 -5.4081 6.4376 13 6 3.4301 -6.1664 7.6393 14 1 4.4917 -6.2829 7.7994 15 6 2.5340 -6.7123 8.5337 16 7 1.2411 -6.5707 8.3384 17 14 3.1562 -7.6528 10.0229 18 1 3.3390 -6.7151 11.1597 19 1 2.1689 -8.6973 10.3966 20 1 4.4553 -8.2938 9.6961 21 6 3.3955 -4.8366 3.2972 22 8 3.5895 -6.0395 3.2364 23 6 2.9249 -4.1410 2.1648 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.8035 -1.0633 3.5753 32 1 3.6202 -2.3328 5.4739 33 1 4.7125 -5.7637 5.2842 34 1 4.7349 -4.2540 6.2268 35 1 2.3338 -4.5559 6.7675 36 1 2.3114 -6.0657 5.8251 37 1 0.6107 -6.9545 8.9679 38 1 2.7340 -4.6650 1.2399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161001723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:39 Heat of formation + Delta-G solvation = -120.585371 kcal Electronic energy + Delta-G solvation = -21085.801488 eV Core-core repulsion = 17699.809599 eV Total energy + Delta-G solvation = -3385.991889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.53242 -41.51290 -38.19383 -37.99056 -36.47739 -34.94210 -34.05375 -31.92962 -30.91222 -28.17798 -27.94779 -26.09504 -24.53353 -23.50339 -22.62865 -21.63427 -19.49236 -18.93020 -18.45008 -17.91609 -17.50462 -17.23845 -16.84622 -16.60374 -16.28312 -15.39112 -15.28901 -15.01565 -14.86620 -14.46678 -14.18656 -13.99955 -13.70632 -13.25723 -13.14102 -13.09864 -13.03052 -12.83377 -12.73419 -12.56206 -12.05259 -12.01507 -11.98221 -11.89878 -11.55879 -11.49602 -11.11621 -11.03315 -10.60758 -9.05699 -8.24951 -6.37569 -0.81699 0.60619 1.35520 1.35749 1.41247 1.43676 1.54122 1.67111 2.40206 2.55604 3.10103 3.35336 3.64460 3.69538 3.82524 3.95254 4.03467 4.10921 4.15799 4.33572 4.45231 4.57412 4.70643 4.73331 4.76975 4.82226 4.89366 4.91404 5.05644 5.14152 5.24954 5.33886 5.40012 5.41313 5.50093 5.74648 6.05197 6.09566 6.50995 6.76745 6.87973 7.32753 8.87363 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.033200 B = 0.003219 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.183387 B = 8695.147849 C = 8944.864022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 C -0.143 4.143 4 O -0.335 6.335 5 C 0.516 3.484 6 O -0.522 6.522 7 C -0.007 4.007 8 C -0.203 4.203 9 C 0.151 3.849 10 N -0.480 5.480 11 C 0.102 3.898 12 C 0.022 3.978 13 C -0.542 4.542 14 H 0.072 0.928 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.970 3.030 18 H -0.264 1.264 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.495 3.505 22 O -0.595 6.595 23 C -0.197 4.197 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.195 0.805 32 H 0.212 0.788 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.014 0.986 36 H -0.025 1.025 37 H 0.265 0.735 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 20.791 -12.341 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 C -0.200 4.200 4 O -0.252 6.252 5 C 0.360 3.640 6 O -0.411 6.411 7 C -0.012 4.012 8 C -0.224 4.224 9 C 0.023 3.977 10 N -0.187 5.187 11 C -0.018 4.018 12 C -0.015 4.015 13 C -0.580 4.580 14 H 0.091 0.909 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.214 1.214 20 H -0.188 1.188 21 C 0.298 3.702 22 O -0.482 6.482 23 C -0.220 4.220 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.212 0.788 32 H 0.229 0.771 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.032 0.968 36 H -0.007 1.007 37 H 0.073 0.927 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.555 19.853 -12.611 23.658 hybrid contribution -0.325 -1.224 0.336 1.311 sum 2.230 18.628 -12.274 22.420 Atomic orbital electron populations 1.22247 0.93420 1.02309 1.04775 1.23163 0.95480 0.94308 0.85503 1.21916 1.02265 0.91112 1.04714 1.86597 1.76446 1.19752 1.42355 1.21187 0.73898 0.81926 0.86988 1.90811 1.48591 1.70876 1.30872 1.19702 0.96196 0.92004 0.93305 1.21047 1.08426 1.03086 0.89884 1.22803 0.91563 0.81348 1.02008 1.45932 1.50413 1.09446 1.12890 1.22270 0.98252 0.97434 0.83821 1.19216 0.93061 0.95540 0.93724 1.21473 0.93890 1.34873 1.07801 0.90942 1.25997 0.94909 0.97113 1.01692 1.70111 1.02512 1.46390 1.38198 0.85365 0.78155 0.78222 0.78814 1.18863 1.21385 1.18794 1.17294 0.81285 0.87699 0.83923 1.90939 1.57003 1.15672 1.84549 1.22492 1.06294 0.94068 0.99156 0.94092 0.90465 0.88375 0.90650 0.91472 0.88186 0.90431 0.78803 0.77106 0.90850 0.85494 0.96780 1.00683 0.92672 0.83180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.55 71.98 0.69 -1.70 16 2 C 0.07 1.09 3.19 30.59 0.10 1.19 16 3 C -0.14 -1.28 9.57 71.98 0.69 -0.60 16 4 O -0.34 -6.74 9.21 -55.48 -0.51 -7.25 16 5 C 0.52 13.42 7.90 70.52 0.56 13.98 16 6 O -0.52 -16.33 15.65 20.20 0.32 -16.01 16 7 C -0.01 -0.18 5.91 -19.84 -0.12 -0.29 16 8 C -0.20 -4.21 9.59 22.30 0.21 -4.00 16 9 C 0.15 3.52 10.25 83.41 0.86 4.37 16 10 N -0.48 -16.57 2.58 -650.80 -1.68 -18.25 16 11 C 0.10 3.98 5.25 86.38 0.45 4.43 16 12 C 0.02 1.14 5.30 29.85 0.16 1.30 16 13 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 14 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 17 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 18 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 C 0.49 20.09 7.42 84.94 0.63 20.72 16 22 O -0.60 -30.05 16.61 -5.32 -0.09 -30.14 16 23 C -0.20 -6.75 9.61 22.96 0.22 -6.53 16 24 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 1.36 7.16 -2.39 -0.02 1.34 16 28 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.19 2.52 7.69 -2.91 -0.02 2.50 16 32 H 0.21 3.08 8.02 -2.91 -0.02 3.06 16 33 H 0.07 3.15 7.37 -2.39 -0.02 3.14 16 34 H 0.13 3.81 8.00 -2.39 -0.02 3.79 16 35 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 36 H -0.03 -1.55 8.14 -2.39 -0.02 -1.57 16 37 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 38 H 0.15 5.24 7.69 -2.91 -0.02 5.22 16 Total: -1.00 -77.60 333.43 6.54 -71.06 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.05 Total: 7.27 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.14 Total: 4.03 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -1.39 Total: -74.23 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.28 Total: -53.40 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -77.60 6.54 -71.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161001723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.525 kcal (2) G-P(sol) polarization free energy of solvation -77.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds