Wall clock time and date at job start Fri Apr 10 2020 17:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 N 1.46501 * 109.46896 * 179.97438 * 3 2 1 5 5 C 1.36906 * 120.00217 * 286.36950 * 4 3 2 6 6 H 1.07999 * 119.99892 * 315.58555 * 5 4 3 7 7 C 1.39021 * 120.00082 * 135.58233 * 5 4 3 8 8 N 1.31382 * 119.99700 * 339.40454 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 159.40302 * 7 5 4 10 10 H 1.48502 * 109.47363 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47129 * 120.00316 * 9 7 5 12 12 H 1.48502 * 109.47034 * 239.99939 * 9 7 5 13 13 C 1.34782 * 119.99916 * 106.37301 * 4 3 2 14 14 O 1.21626 * 119.99609 * 186.36855 * 13 4 3 15 15 C 1.47436 * 119.99916 * 6.37375 * 13 4 3 16 16 C 1.39859 * 120.16860 * 322.10167 * 15 13 4 17 17 C 1.37738 * 119.99224 * 179.70213 * 16 15 13 18 18 C 1.38556 * 120.34812 * 0.29641 * 17 16 15 19 19 C 1.50704 * 119.82306 * 180.02562 * 18 17 16 20 20 C 1.38447 * 120.34823 * 359.97438 * 18 17 16 21 21 O 1.36006 * 120.00166 * 180.02562 * 20 18 17 22 22 C 1.39150 * 119.99615 * 359.97438 * 20 18 17 23 23 O 1.35750 * 120.17085 * 180.02562 * 22 20 18 24 24 H 1.09003 * 109.46767 * 60.00031 * 1 2 3 25 25 H 1.08997 * 109.47074 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47338 * 300.00236 * 1 2 3 27 27 H 1.08995 * 109.47338 * 239.99764 * 2 1 3 28 28 H 1.09005 * 109.46692 * 119.99432 * 2 1 3 29 29 H 1.09004 * 109.47490 * 59.99800 * 3 2 1 30 30 H 1.08996 * 109.47073 * 299.99856 * 3 2 1 31 31 H 0.97004 * 119.99752 * 185.03173 * 8 7 5 32 32 H 1.07992 * 120.00472 * 359.97438 * 16 15 13 33 33 H 1.08004 * 119.82903 * 180.28148 * 17 16 15 34 34 H 1.08994 * 109.47616 * 90.00717 * 19 18 17 35 35 H 1.09004 * 109.46759 * 210.00366 * 19 18 17 36 36 H 1.09004 * 109.47097 * 329.99980 * 19 18 17 37 37 H 0.96702 * 114.00128 * 89.99849 * 21 20 18 38 38 H 0.96697 * 114.00035 * 90.00100 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.1085 1.1385 6 1 3.8801 1.5108 2.0920 7 6 5.2814 0.2516 1.0666 8 7 5.4235 -0.5461 0.0324 9 14 6.5470 0.2343 2.4405 10 1 6.1602 1.2193 3.4823 11 1 6.6084 -1.1228 3.0400 12 1 7.8791 0.5933 1.8909 13 6 4.1794 1.7714 -1.1191 14 8 5.3900 1.6601 -1.1545 15 6 3.4495 2.2660 -2.3007 16 6 2.2063 1.7212 -2.6379 17 6 1.5247 2.1902 -3.7391 18 6 2.0668 3.1972 -4.5212 19 6 1.3106 3.7020 -5.7231 20 6 3.2990 3.7429 -4.2039 21 8 3.8243 4.7315 -4.9762 22 6 3.9995 3.2806 -3.0940 23 8 5.2077 3.8135 -2.7792 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.1443 -1.1951 0.0159 32 1 1.7787 0.9358 -2.0323 33 1 0.5628 1.7707 -3.9943 34 1 0.6658 4.5289 -5.4258 35 1 2.0171 4.0457 -6.4788 36 1 0.7023 2.8964 -6.1343 37 1 3.5779 5.6233 -4.6950 38 1 5.1591 4.5740 -2.1839 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179445020.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:50 Heat of formation + Delta-G solvation = -70.111464 kcal Electronic energy + Delta-G solvation = -22703.299080 eV Core-core repulsion = 19319.495904 eV Total energy + Delta-G solvation = -3383.803176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.19606 -38.28527 -36.64065 -36.12427 -34.89532 -32.78918 -31.87338 -30.98780 -28.90418 -27.26540 -25.74164 -24.31852 -22.27243 -21.81412 -20.82409 -19.77043 -18.22805 -17.53187 -16.53035 -15.95908 -15.76874 -15.30651 -14.79354 -14.66087 -13.98515 -13.80376 -13.61557 -13.32357 -13.18841 -12.83123 -12.56167 -12.43881 -11.95539 -11.84291 -11.54973 -11.33611 -11.14587 -11.06535 -10.87823 -10.74991 -10.60384 -10.42541 -10.19481 -9.92655 -9.87019 -8.76069 -8.28756 -8.20742 -7.90790 -7.08474 -6.10801 -3.83824 1.32754 1.47645 3.30615 3.40548 3.43640 3.61726 4.20590 4.30869 4.50732 4.64346 4.90350 5.07638 5.21730 5.27946 5.44299 5.56569 5.57659 5.65018 5.66584 5.74114 5.84212 5.97622 6.03871 6.10930 6.24542 6.30059 6.36237 6.43574 6.56843 6.60620 6.75592 6.80143 6.98401 7.11168 7.62054 7.67140 8.19202 8.28896 9.04269 9.19232 9.64502 10.31277 10.96914 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.018952 B = 0.006697 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.084151 B = 4180.028201 C = 5349.833775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.083 3.917 4 N -0.443 5.443 5 C -0.351 4.351 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.819 5.819 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.280 1.280 13 C 0.500 3.500 14 O -0.510 6.510 15 C -0.111 4.111 16 C -0.104 4.104 17 C -0.126 4.126 18 C -0.103 4.103 19 C -0.108 4.108 20 C 0.064 3.936 21 O -0.485 6.485 22 C 0.122 3.878 23 O -0.467 6.467 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.264 0.736 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.379 0.621 38 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.794 7.566 -5.667 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.041 4.041 4 N -0.165 5.165 5 C -0.477 4.477 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.451 5.451 9 Si 0.737 3.263 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.206 1.206 13 C 0.288 3.712 14 O -0.386 6.386 15 C -0.116 4.116 16 C -0.122 4.122 17 C -0.144 4.144 18 C -0.104 4.104 19 C -0.164 4.164 20 C 0.019 3.981 21 O -0.294 6.294 22 C 0.075 3.925 23 O -0.275 6.275 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.144 0.856 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.233 0.767 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -10.502 6.491 -6.458 13.934 hybrid contribution 0.229 0.522 1.179 1.310 sum -10.273 7.013 -5.279 13.513 Atomic orbital electron populations 1.21774 0.96822 1.01014 1.01102 1.21829 0.93658 0.98389 1.03404 1.22133 0.84615 0.96119 1.01228 1.43169 1.02621 1.60012 1.10659 1.18965 1.12924 1.29350 0.86480 0.90262 1.25272 0.98408 0.93747 0.96332 1.69845 1.29973 1.16159 1.29147 0.86201 0.81776 0.77485 0.80874 1.19562 1.21225 1.20609 1.17661 0.87298 0.83192 0.83088 1.90687 1.13341 1.53225 1.81355 1.21011 0.94959 0.97765 0.97863 1.21872 0.93757 1.00095 0.96496 1.20844 1.00473 0.97783 0.95330 1.20062 0.93799 0.98424 0.98088 1.20651 0.99481 1.01009 0.95294 1.18440 0.92155 0.94398 0.93099 1.84903 1.74201 1.16470 1.53786 1.18752 0.85823 0.95369 0.92587 1.84919 1.23977 1.49968 1.68662 0.93329 0.93182 0.93016 0.92094 0.90635 0.93010 0.90381 0.92558 0.83340 0.85586 0.91563 0.91078 0.91552 0.76712 0.76411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.63 16 2 C -0.13 -2.43 5.28 -26.73 -0.14 -2.57 16 3 C 0.08 1.61 4.87 -4.04 -0.02 1.59 16 4 N -0.44 -11.07 2.56 -116.02 -0.30 -11.36 16 5 C -0.35 -9.56 8.94 -15.00 -0.13 -9.69 16 6 H 0.08 2.08 7.91 -52.49 -0.42 1.67 16 7 C 0.07 2.10 4.31 -17.45 -0.08 2.03 16 8 N -0.82 -24.54 11.72 55.50 0.65 -23.89 16 9 Si 0.91 21.99 29.60 -169.99 -5.03 16.96 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.50 13.15 6.64 -12.51 -0.08 13.07 16 14 O -0.51 -15.74 13.56 -11.64 -0.16 -15.90 16 15 C -0.11 -2.40 5.42 -104.87 -0.57 -2.96 16 16 C -0.10 -1.84 7.35 -39.16 -0.29 -2.13 16 17 C -0.13 -1.83 9.67 -39.65 -0.38 -2.22 16 18 C -0.10 -1.48 5.89 -104.43 -0.62 -2.09 16 19 C -0.11 -1.14 9.78 36.01 0.35 -0.79 16 20 C 0.06 1.05 6.68 -39.17 -0.26 0.79 16 21 O -0.49 -6.89 12.30 -34.30 -0.42 -7.32 16 22 C 0.12 2.41 6.70 -38.57 -0.26 2.16 16 23 O -0.47 -9.50 11.99 -45.21 -0.54 -10.05 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.19 7.09 -51.93 -0.37 0.82 16 28 H 0.07 1.53 7.99 -51.93 -0.42 1.12 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.36 3.90 -51.93 -0.20 1.16 16 31 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 32 H 0.15 2.58 3.84 -52.49 -0.20 2.38 16 33 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.77 7.51 -51.93 -0.39 0.39 16 36 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.38 3.34 9.06 45.56 0.41 3.76 16 38 H 0.38 5.82 9.06 45.56 0.41 6.23 16 LS Contribution 316.04 15.07 4.76 4.76 Total: -1.00 -36.43 316.04 -6.40 -42.84 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.26 Total: 8.41 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.11 Total: -4.45 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.35 Total: -35.25 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.12 Total: -33.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.43 -6.40 -42.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179445020.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.274 kcal (2) G-P(sol) polarization free energy of solvation -36.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds