Wall clock time and date at job start Fri Apr 10 2020 17:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35905 * 116.99880 * 2 1 4 4 C 1.38758 * 120.05103 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94003 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05738 * 359.74179 * 5 4 3 7 7 C 1.38251 * 120.10950 * 0.51034 * 6 5 4 8 8 C 1.50703 * 119.96917 * 179.76667 * 7 6 5 9 9 H 1.09003 * 109.46418 * 204.72792 * 8 7 6 10 10 O 1.42899 * 109.46953 * 324.72174 * 8 7 6 11 11 C 1.50699 * 109.47240 * 84.72695 * 8 7 6 12 12 O 1.21279 * 119.99997 * 244.99810 * 11 8 7 13 13 N 1.34777 * 120.00179 * 64.99460 * 11 8 7 14 14 C 1.46497 * 120.00376 * 179.97438 * 13 11 8 15 15 H 1.09002 * 109.46725 * 35.00314 * 14 13 11 16 16 C 1.52997 * 109.47188 * 275.00479 * 14 13 11 17 17 C 1.50697 * 109.47081 * 155.00043 * 14 13 11 18 18 H 1.07999 * 120.00055 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99687 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00458 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99926 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.46980 * 89.99582 * 21 19 17 23 23 H 1.48493 * 109.47135 * 209.99651 * 21 19 17 24 24 H 1.48498 * 109.47274 * 330.00048 * 21 19 17 25 25 C 1.38167 * 120.05392 * 359.49028 * 7 6 5 26 26 H 1.08999 * 109.47127 * 300.00036 * 1 2 3 27 27 H 1.08999 * 109.46743 * 60.00295 * 1 2 3 28 28 H 1.08998 * 109.46496 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.03016 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.97507 * 180.02562 * 5 4 3 31 31 H 1.08000 * 119.94730 * 180.28161 * 6 5 4 32 32 H 0.96701 * 114.00071 * 60.00798 * 10 8 7 33 33 H 0.97006 * 119.99702 * 0.02562 * 13 11 8 34 34 H 1.09002 * 109.47153 * 299.99573 * 16 14 13 35 35 H 1.09001 * 109.46832 * 179.97438 * 16 14 13 36 36 H 1.09004 * 109.47261 * 59.99745 * 16 14 13 37 37 H 0.96999 * 120.00480 * 179.97438 * 20 19 17 38 38 H 1.07994 * 120.02520 * 180.27259 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6759 0.0065 7 6 4.0559 2.5172 0.0007 8 6 5.5608 2.5984 0.0013 9 1 5.9738 1.6880 -0.4332 10 8 5.9772 3.7263 -0.7711 11 6 6.0552 2.7487 1.4169 12 8 6.6217 3.7658 1.7566 13 7 5.8677 1.7529 2.3055 14 6 6.3489 1.8987 3.6815 15 1 6.2459 2.9378 3.9941 16 6 7.8209 1.4880 3.7533 17 6 5.5361 1.0167 4.5939 18 1 4.7410 0.4081 4.1893 19 6 5.8076 0.9868 5.9454 20 7 6.7762 1.7276 6.4381 21 14 4.8007 -0.1070 7.0764 22 1 5.4405 -1.4438 7.1707 23 1 4.7337 0.5061 8.4272 24 1 3.4275 -0.2530 6.5303 25 6 3.4311 1.2849 0.0001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 0.2127 2.3203 0.0005 30 1 1.3338 4.5114 0.0019 31 1 3.7920 4.6382 0.0115 32 1 5.6457 4.5728 -0.4414 33 1 5.4149 0.9392 2.0337 34 1 7.9239 0.4489 3.4407 35 1 8.1790 1.5969 4.7770 36 1 8.4088 2.1260 3.0933 37 1 6.9669 1.7068 7.3889 38 1 4.0206 0.3801 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179770848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:55 Heat of formation + Delta-G solvation = -102.790697 kcal Electronic energy + Delta-G solvation = -21853.205101 eV Core-core repulsion = 18467.984847 eV Total energy + Delta-G solvation = -3385.220254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43439 -39.29692 -37.55050 -36.03820 -34.67171 -32.58534 -31.60288 -30.31336 -29.05297 -27.52618 -26.32560 -25.23806 -22.71132 -21.97757 -20.90518 -19.54849 -18.31618 -17.88869 -16.48855 -16.21402 -15.99740 -15.83611 -15.67680 -15.25949 -14.87486 -14.16315 -13.86635 -13.66679 -13.28998 -13.07403 -12.80534 -12.48383 -12.38144 -12.00606 -11.81118 -11.56328 -11.22031 -11.13160 -11.10934 -10.94473 -10.76551 -10.56948 -10.33971 -10.23608 -9.30096 -9.05075 -8.64981 -8.55313 -8.24199 -7.94633 -6.12321 -4.21427 1.18929 1.40439 3.07779 3.24057 3.28431 3.30991 3.33581 3.65140 4.00166 4.36127 4.54533 4.64032 4.68611 4.92421 4.97244 4.99256 5.19079 5.20274 5.21895 5.30604 5.43549 5.46337 5.62583 5.91858 6.19488 6.33791 6.47022 6.62501 6.81753 6.95971 7.14078 7.30002 7.41976 7.49244 7.59778 7.69475 7.90829 8.14161 8.61172 8.75753 9.04184 9.45651 10.93662 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.005981 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.706391 B = 4680.514726 C = 6213.168765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.131 3.869 4 C -0.207 4.207 5 C -0.076 4.076 6 C -0.141 4.141 7 C -0.070 4.070 8 C 0.130 3.870 9 H 0.129 0.871 10 O -0.533 6.533 11 C 0.479 3.521 12 O -0.546 6.546 13 N -0.699 5.699 14 C 0.264 3.736 15 H 0.048 0.952 16 C -0.148 4.148 17 C -0.532 4.532 18 H 0.061 0.939 19 C 0.067 3.933 20 N -0.884 5.884 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.137 4.137 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.381 0.619 33 H 0.389 0.611 34 H 0.027 0.973 35 H 0.091 0.909 36 H 0.015 0.985 37 H 0.264 0.736 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.629 -1.036 -13.692 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.086 3.914 4 C -0.226 4.226 5 C -0.094 4.094 6 C -0.160 4.160 7 C -0.071 4.071 8 C 0.067 3.933 9 H 0.147 0.853 10 O -0.339 6.339 11 C 0.263 3.737 12 O -0.424 6.424 13 N -0.347 5.347 14 C 0.162 3.838 15 H 0.066 0.934 16 C -0.206 4.206 17 C -0.571 4.571 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.156 4.156 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.231 0.769 33 H 0.222 0.778 34 H 0.046 0.954 35 H 0.109 0.891 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.741 -0.905 -13.582 17.339 hybrid contribution -1.340 -0.487 0.976 1.728 sum -12.081 -1.392 -12.606 17.516 Atomic orbital electron populations 1.23048 0.78485 1.03904 1.01283 1.86082 1.21302 1.26836 1.88693 1.18899 0.92123 0.84190 0.96200 1.21229 0.99957 0.92448 1.08965 1.20854 0.94256 0.97072 0.97182 1.20786 0.93937 0.97944 1.03301 1.20058 0.95301 0.93239 0.98489 1.20783 0.89399 0.92053 0.91063 0.85349 1.86565 1.76879 1.16914 1.53496 1.20986 0.80609 0.84778 0.87363 1.90673 1.43392 1.29361 1.79016 1.46537 1.57275 1.17820 1.13117 1.18774 0.91345 0.98398 0.75254 0.93375 1.22085 0.97936 0.97618 1.02984 1.21206 1.17372 1.26138 0.92355 0.92056 1.24878 0.95227 0.95606 0.97949 1.69899 1.29556 1.39108 1.13547 0.86460 0.80399 0.80416 0.79922 1.20494 1.21063 1.19862 1.20167 0.91618 0.97862 1.05973 0.92544 0.92798 0.88272 0.85508 0.85583 0.85800 0.76937 0.77815 0.95379 0.89074 0.96595 0.92574 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.95 10.50 -19.44 -0.20 -4.15 16 3 C 0.13 1.74 6.69 -39.22 -0.26 1.48 16 4 C -0.21 -2.44 9.04 -39.43 -0.36 -2.80 16 5 C -0.08 -0.89 10.04 -39.60 -0.40 -1.29 16 6 C -0.14 -1.88 9.33 -39.56 -0.37 -2.25 16 7 C -0.07 -1.00 4.95 -104.64 -0.52 -1.51 16 8 C 0.13 2.00 3.62 -29.03 -0.11 1.90 16 9 H 0.13 1.72 8.05 -51.93 -0.42 1.30 16 10 O -0.53 -8.17 12.79 -55.09 -0.70 -8.88 16 11 C 0.48 9.64 7.12 -10.99 -0.08 9.57 16 12 O -0.55 -13.06 15.99 -14.30 -0.23 -13.29 16 13 N -0.70 -14.73 5.02 -54.94 -0.28 -15.01 16 14 C 0.26 6.79 2.56 -69.09 -0.18 6.61 16 15 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 16 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 17 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 20 N -0.88 -25.01 11.32 55.43 0.63 -24.39 16 21 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.14 -1.89 9.45 -39.43 -0.37 -2.26 16 26 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.47 6.62 -52.49 -0.35 1.12 16 32 H 0.38 5.06 7.14 45.56 0.33 5.39 16 33 H 0.39 7.23 8.37 -40.82 -0.34 6.89 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 324.41 15.07 4.89 4.89 Total: -1.00 -32.66 324.41 -6.89 -39.55 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.27 Total: 11.04 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.70 Total: -5.54 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.35 Total: -39.40 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -1.14 Total: -26.32 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.66 -6.89 -39.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179770848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.243 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds