Wall clock time and date at job start Fri Apr 10 2020 17:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35905 * 116.99880 * 2 1 4 4 C 1.38758 * 120.05103 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94003 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05738 * 359.74179 * 5 4 3 7 7 C 1.38251 * 120.10950 * 0.51034 * 6 5 4 8 8 C 1.50703 * 119.96917 * 179.76667 * 7 6 5 9 9 H 1.09003 * 109.46418 * 204.72792 * 8 7 6 10 10 O 1.42899 * 109.46953 * 324.72174 * 8 7 6 11 11 C 1.50699 * 109.47240 * 84.72695 * 8 7 6 12 12 O 1.21279 * 119.99997 * 244.99810 * 11 8 7 13 13 N 1.34777 * 120.00179 * 64.99460 * 11 8 7 14 14 C 1.46497 * 120.00376 * 179.97438 * 13 11 8 15 15 H 1.09002 * 109.46725 * 35.00314 * 14 13 11 16 16 C 1.52997 * 109.47188 * 275.00479 * 14 13 11 17 17 C 1.50697 * 109.47081 * 155.00043 * 14 13 11 18 18 H 1.07999 * 120.00055 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99687 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00458 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99926 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.46980 * 89.99582 * 21 19 17 23 23 H 1.48493 * 109.47135 * 209.99651 * 21 19 17 24 24 H 1.48498 * 109.47274 * 330.00048 * 21 19 17 25 25 C 1.38167 * 120.05392 * 359.49028 * 7 6 5 26 26 H 1.08999 * 109.47127 * 300.00036 * 1 2 3 27 27 H 1.08999 * 109.46743 * 60.00295 * 1 2 3 28 28 H 1.08998 * 109.46496 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.03016 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.97507 * 180.02562 * 5 4 3 31 31 H 1.08000 * 119.94730 * 180.28161 * 6 5 4 32 32 H 0.96701 * 114.00071 * 60.00798 * 10 8 7 33 33 H 0.97006 * 119.99702 * 0.02562 * 13 11 8 34 34 H 1.09002 * 109.47153 * 299.99573 * 16 14 13 35 35 H 1.09001 * 109.46832 * 179.97438 * 16 14 13 36 36 H 1.09004 * 109.47261 * 59.99745 * 16 14 13 37 37 H 0.96999 * 120.00480 * 179.97438 * 20 19 17 38 38 H 1.07994 * 120.02520 * 180.27259 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6759 0.0065 7 6 4.0559 2.5172 0.0007 8 6 5.5608 2.5984 0.0013 9 1 5.9738 1.6880 -0.4332 10 8 5.9772 3.7263 -0.7711 11 6 6.0552 2.7487 1.4169 12 8 6.6217 3.7658 1.7566 13 7 5.8677 1.7529 2.3055 14 6 6.3489 1.8987 3.6815 15 1 6.2459 2.9378 3.9941 16 6 7.8209 1.4880 3.7533 17 6 5.5361 1.0167 4.5939 18 1 4.7410 0.4081 4.1893 19 6 5.8076 0.9868 5.9454 20 7 6.7762 1.7276 6.4381 21 14 4.8007 -0.1070 7.0764 22 1 5.4405 -1.4438 7.1707 23 1 4.7337 0.5061 8.4272 24 1 3.4275 -0.2530 6.5303 25 6 3.4311 1.2849 0.0001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 0.2127 2.3203 0.0005 30 1 1.3338 4.5114 0.0019 31 1 3.7920 4.6382 0.0115 32 1 5.6457 4.5728 -0.4414 33 1 5.4149 0.9392 2.0337 34 1 7.9239 0.4489 3.4407 35 1 8.1790 1.5969 4.7770 36 1 8.4088 2.1260 3.0933 37 1 6.9669 1.7068 7.3889 38 1 4.0206 0.3801 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179770848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:54 Heat of formation + Delta-G solvation = -126.075873 kcal Electronic energy + Delta-G solvation = -21854.214822 eV Core-core repulsion = 18467.984847 eV Total energy + Delta-G solvation = -3386.229975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.55284 -40.60436 -38.72005 -37.33212 -36.48096 -34.43885 -32.81304 -31.32713 -30.78043 -28.38970 -27.54511 -27.29413 -23.70993 -23.43014 -22.29992 -21.25398 -19.55252 -19.26408 -17.91328 -17.57310 -17.17199 -16.99447 -16.83625 -16.61733 -16.29474 -15.85415 -15.12963 -14.95306 -14.56347 -14.41181 -14.20141 -13.92780 -13.66512 -13.33810 -13.04948 -12.98900 -12.81693 -12.73470 -12.70301 -12.30759 -12.24771 -12.15244 -11.97869 -11.67244 -11.12744 -10.73253 -10.58947 -9.87769 -9.76152 -9.19607 -8.18818 -6.36272 0.19580 0.44062 1.43332 1.43843 1.54500 1.63688 2.26348 2.36563 2.50556 2.73612 3.11288 3.37008 3.53847 3.81881 3.89866 4.05936 4.14872 4.26958 4.33788 4.42216 4.52691 4.66587 4.73127 4.75479 4.90305 4.97998 5.06999 5.25292 5.38633 5.40381 5.48670 5.56979 5.65031 5.70591 5.86137 6.07588 6.42357 6.44115 6.70331 6.87166 7.28360 7.44331 8.87443 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.005981 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.706391 B = 4680.514726 C = 6213.168765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.119 3.881 4 C -0.205 4.205 5 C -0.077 4.077 6 C -0.158 4.158 7 C -0.084 4.084 8 C 0.147 3.853 9 H 0.152 0.848 10 O -0.538 6.538 11 C 0.477 3.523 12 O -0.589 6.589 13 N -0.695 5.695 14 C 0.270 3.730 15 H -0.001 1.001 16 C -0.135 4.135 17 C -0.546 4.546 18 H 0.070 0.930 19 C 0.016 3.984 20 N -0.916 5.916 21 Si 0.970 3.030 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.151 4.151 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.131 0.869 32 H 0.389 0.611 33 H 0.403 0.597 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.012 0.988 37 H 0.266 0.734 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.860 -2.231 -14.486 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.074 3.926 4 C -0.223 4.223 5 C -0.095 4.095 6 C -0.176 4.176 7 C -0.085 4.085 8 C 0.085 3.915 9 H 0.169 0.831 10 O -0.344 6.344 11 C 0.263 3.737 12 O -0.471 6.471 13 N -0.344 5.344 14 C 0.167 3.833 15 H 0.017 0.983 16 C -0.194 4.194 17 C -0.584 4.584 18 H 0.088 0.912 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.795 3.205 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.170 4.170 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.136 0.864 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.149 0.851 32 H 0.239 0.761 33 H 0.238 0.762 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.997 -2.119 -14.414 19.523 hybrid contribution -0.711 -0.075 1.184 1.383 sum -13.708 -2.194 -13.230 19.176 Atomic orbital electron populations 1.23357 0.76393 1.05609 1.02293 1.86058 1.23534 1.26615 1.88600 1.19079 0.92219 0.85073 0.96277 1.21591 1.01406 0.91876 1.07474 1.21210 0.93850 0.98352 0.96105 1.21059 0.94963 0.98054 1.03543 1.19936 0.94252 0.94035 1.00312 1.20669 0.90549 0.92891 0.87427 0.83091 1.86546 1.77190 1.17452 1.53224 1.21890 0.79302 0.83487 0.89035 1.90646 1.45196 1.30927 1.80314 1.46279 1.57496 1.18930 1.11705 1.18374 0.91819 0.95471 0.77644 0.98270 1.21912 0.97650 0.98310 1.01483 1.21492 1.17703 1.26252 0.92915 0.91177 1.25771 0.96216 0.96867 0.99547 1.70043 1.31008 1.40475 1.13927 0.85375 0.79044 0.78603 0.77526 1.19528 1.21055 1.18985 1.20331 0.92438 0.97949 1.06286 0.92078 0.91135 0.86412 0.82810 0.82832 0.85116 0.76050 0.76157 0.93937 0.91337 0.96873 0.92489 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.67 10.50 -92.48 -0.97 -8.64 16 3 C 0.12 2.93 6.69 22.51 0.15 3.08 16 4 C -0.21 -4.29 9.04 22.37 0.20 -4.08 16 5 C -0.08 -1.64 10.04 22.25 0.22 -1.42 16 6 C -0.16 -3.99 9.33 22.29 0.21 -3.78 16 7 C -0.08 -2.32 4.95 -19.88 -0.10 -2.42 16 8 C 0.15 4.42 3.62 29.10 0.11 4.53 16 9 H 0.15 3.80 8.05 -2.39 -0.02 3.78 16 10 O -0.54 -16.10 12.79 -129.99 -1.66 -17.76 16 11 C 0.48 19.35 7.12 87.66 0.62 19.97 16 12 O -0.59 -29.02 15.99 15.96 0.26 -28.77 16 13 N -0.69 -29.44 5.02 -446.11 -2.24 -31.68 16 14 C 0.27 14.23 2.56 44.24 0.11 14.34 16 15 H 0.00 -0.04 7.58 -2.39 -0.02 -0.06 16 16 C -0.13 -6.93 9.26 71.98 0.67 -6.27 16 17 C -0.55 -29.22 8.73 25.60 0.22 -29.00 16 18 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 19 C 0.02 0.87 5.30 84.66 0.45 1.32 16 20 N -0.92 -52.76 11.32 21.45 0.24 -52.52 16 21 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 C -0.15 -3.96 9.45 22.36 0.21 -3.75 16 26 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 27 H 0.07 0.72 7.66 -2.39 -0.02 0.71 16 28 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.15 2.27 6.30 -2.91 -0.02 2.25 16 30 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.13 2.99 6.62 -2.91 -0.02 2.97 16 32 H 0.39 10.21 7.14 -74.06 -0.53 9.69 16 33 H 0.40 14.75 8.37 -92.70 -0.78 13.97 16 34 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 36 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -71.08 324.41 1.63 -69.45 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: -0.21 Total: 31.78 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 4.19 Total: -6.12 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.00 Total: -84.20 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -2.38 Total: -55.17 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -71.08 1.63 -69.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179770848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.625 kcal (2) G-P(sol) polarization free energy of solvation -71.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds