Wall clock time and date at job start Fri Apr 10 2020 17:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00031 * 2 1 4 4 O 1.20818 * 120.00132 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99571 * 180.02562 * 3 2 1 6 6 O 1.42900 * 109.47013 * 179.97438 * 5 3 2 7 7 C 1.35897 * 117.00179 * 179.97438 * 6 5 3 8 8 C 1.38736 * 120.05670 * 180.02562 * 7 6 5 9 9 C 1.38142 * 119.94703 * 180.02562 * 8 7 6 10 10 C 1.38270 * 120.05420 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.94457 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47517 * 89.99760 * 11 10 9 13 13 C 1.46492 * 120.00115 * 89.99961 * 12 11 10 14 14 C 1.36936 * 119.99890 * 270.00173 * 12 11 10 15 15 H 1.08006 * 119.99716 * 334.60211 * 14 12 11 16 16 C 1.38815 * 120.00095 * 154.60134 * 14 12 11 17 17 N 1.31622 * 119.99508 * 3.91403 * 16 14 12 18 18 Si 1.86797 * 120.00036 * 183.91118 * 16 14 12 19 19 H 1.48502 * 109.46887 * 85.00282 * 18 16 14 20 20 H 1.48494 * 109.47106 * 205.00158 * 18 16 14 21 21 H 1.48498 * 109.47139 * 325.00161 * 18 16 14 22 22 C 1.38270 * 120.11064 * 0.24536 * 10 9 8 23 23 C 1.38144 * 120.05326 * 359.46276 * 22 10 9 24 24 H 1.08998 * 109.47751 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46975 * 300.00218 * 1 2 3 26 26 H 1.09003 * 109.47132 * 60.00310 * 1 2 3 27 27 H 1.09000 * 109.47750 * 59.99771 * 5 3 2 28 28 H 1.08997 * 109.47174 * 299.99563 * 5 3 2 29 29 H 1.08000 * 120.02685 * 359.97438 * 8 7 6 30 30 H 1.07999 * 119.97506 * 179.97438 * 9 8 7 31 31 H 1.08997 * 109.47005 * 329.99308 * 11 10 9 32 32 H 1.09000 * 109.46866 * 209.99866 * 11 10 9 33 33 H 1.09009 * 109.47449 * 264.47124 * 13 12 11 34 34 H 1.09007 * 109.47424 * 24.46101 * 13 12 11 35 35 H 1.08995 * 109.47685 * 144.46940 * 13 12 11 36 36 H 0.97000 * 119.99193 * 179.97438 * 17 16 14 37 37 H 1.08000 * 119.97227 * 179.70158 * 22 10 9 38 38 H 1.08001 * 120.02469 * 180.25033 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 8 3.9715 2.6451 -0.0011 7 6 5.3076 2.8933 -0.0011 8 6 5.7714 4.2009 -0.0010 9 6 7.1301 4.4507 -0.0016 10 6 8.0276 3.3988 -0.0027 11 6 9.5092 3.6741 -0.0039 12 7 9.9906 3.7629 1.3769 13 6 10.4631 2.5600 2.0667 14 6 9.9989 4.9704 2.0228 15 1 10.0562 5.8867 1.4539 16 6 9.9335 5.0167 3.4086 17 7 9.9414 3.9000 4.1054 18 14 9.8345 6.6636 4.2845 19 1 8.4188 7.1077 4.3450 20 1 10.3689 6.5241 5.6629 21 1 10.6372 7.6683 3.5418 22 6 7.5679 2.0948 -0.0085 23 6 6.2102 1.8398 -0.0018 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9557 0.7808 -0.8908 28 1 3.9563 0.7805 0.8892 29 1 5.0708 5.0228 -0.0014 30 1 7.4916 5.4684 -0.0019 31 1 9.7033 4.6156 -0.5177 32 1 10.0285 2.8657 -0.5185 33 1 9.6515 2.1392 2.6604 34 1 10.7938 1.8260 1.3318 35 1 11.2952 2.8195 2.7210 36 1 9.8961 3.9325 5.0738 37 1 8.2709 1.2749 -0.0142 38 1 5.8517 0.8210 -0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183075306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:06 Heat of formation + Delta-G solvation = -82.109159 kcal Electronic energy + Delta-G solvation = -21105.277924 eV Core-core repulsion = 17720.954489 eV Total energy + Delta-G solvation = -3384.323435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.79996 -40.87526 -38.88974 -37.59939 -36.93214 -33.56001 -32.04299 -31.45005 -30.39678 -28.04944 -27.91773 -26.78458 -23.86533 -23.47774 -22.31384 -21.56342 -19.51464 -18.76293 -18.37861 -18.02659 -17.98315 -16.97166 -16.51838 -16.40262 -16.18839 -15.44294 -15.27742 -14.94182 -14.64845 -14.42843 -14.34921 -14.06375 -13.67779 -13.40726 -13.08573 -12.98163 -12.81550 -12.59488 -12.40143 -12.14587 -11.99754 -11.96488 -11.91084 -11.81798 -11.72336 -11.48716 -10.59070 -9.81905 -9.03475 -8.70313 -7.81413 -5.27638 0.52740 0.57206 0.95178 1.07664 1.46162 1.48467 1.54905 2.51232 2.54868 2.90700 3.36653 3.56392 3.90697 3.95478 4.00459 4.02085 4.08711 4.26892 4.30005 4.30359 4.46167 4.60254 4.67580 4.71401 4.87187 4.92334 5.06024 5.16710 5.22821 5.36537 5.43832 5.52957 5.67418 5.83079 5.87765 5.94006 6.37212 6.40556 6.56377 7.20494 7.90951 8.34670 9.21700 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.023621 B = 0.003582 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.124435 B = 7814.256811 C = 8185.023274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.469 3.531 4 O -0.528 6.528 5 C 0.062 3.938 6 O -0.321 6.321 7 C 0.104 3.896 8 C -0.162 4.162 9 C -0.077 4.077 10 C -0.128 4.128 11 C 0.183 3.817 12 N -0.612 5.612 13 C 0.182 3.818 14 C -0.255 4.255 15 H 0.072 0.928 16 C -0.049 4.049 17 N -0.936 5.936 18 Si 0.960 3.040 19 H -0.289 1.289 20 H -0.295 1.295 21 H -0.268 1.268 22 C -0.081 4.081 23 C -0.201 4.201 24 H 0.140 0.860 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.139 0.861 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.056 0.944 32 H 0.070 0.930 33 H -0.003 1.003 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.245 0.755 37 H 0.134 0.866 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.632 -10.469 -10.911 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.312 3.688 4 O -0.417 6.417 5 C -0.013 4.013 6 O -0.236 6.236 7 C 0.060 3.940 8 C -0.181 4.181 9 C -0.096 4.096 10 C -0.131 4.131 11 C 0.058 3.942 12 N -0.335 5.335 13 C 0.037 3.963 14 C -0.385 4.385 15 H 0.090 0.910 16 C -0.244 4.244 17 N -0.583 5.583 18 Si 0.789 3.211 19 H -0.216 1.216 20 H -0.222 1.222 21 H -0.192 1.192 22 C -0.100 4.100 23 C -0.220 4.220 24 H 0.158 0.842 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.156 0.844 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.016 0.984 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.152 0.848 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.971 -10.071 -10.739 20.297 hybrid contribution -0.330 0.969 1.058 1.472 sum -14.302 -9.103 -9.681 19.523 Atomic orbital electron populations 1.23648 0.73869 1.06201 1.02700 1.86451 1.25502 1.31086 1.83744 1.23356 0.91571 0.81787 0.72111 1.90706 1.67676 1.37688 1.45637 1.22159 0.87826 0.83342 1.07995 1.85989 1.21213 1.26546 1.89867 1.18873 0.81116 0.94463 0.99567 1.20489 0.95737 0.94766 1.07084 1.20891 0.91756 0.99490 0.97472 1.21032 0.98614 0.93574 0.99851 1.20018 0.88182 1.00348 0.85696 1.44226 1.72067 1.05421 1.11762 1.20589 0.96407 0.86379 0.92909 1.19496 1.43274 0.86112 0.89601 0.90997 1.25854 1.01030 0.99650 0.97865 1.70257 1.56445 1.26386 1.05215 0.85382 0.77603 0.80475 0.77642 1.21595 1.22192 1.19243 1.21010 0.95223 0.96372 0.97362 1.21418 0.93355 0.99008 1.08187 0.84208 0.92055 0.91711 0.84405 0.85468 0.85429 0.86025 0.92584 0.91204 0.98438 0.95419 0.95772 0.94512 0.84774 0.82296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.10 10.57 -51.40 -0.54 -6.65 16 3 C 0.47 10.66 8.03 71.23 0.57 11.23 16 4 O -0.53 -16.39 16.25 28.42 0.46 -15.92 16 5 C 0.06 1.23 5.33 71.23 0.38 1.61 16 6 O -0.32 -9.57 9.67 -73.32 -0.71 -10.28 16 7 C 0.10 3.30 6.69 22.51 0.15 3.45 16 8 C -0.16 -5.65 9.99 22.37 0.22 -5.42 16 9 C -0.08 -2.87 9.69 22.25 0.22 -2.65 16 10 C -0.13 -4.75 5.46 -19.85 -0.11 -4.86 16 11 C 0.18 7.17 5.83 85.63 0.50 7.67 16 12 N -0.61 -30.20 2.91 -731.31 -2.13 -32.33 16 13 C 0.18 8.93 8.99 127.77 1.15 10.07 16 14 C -0.25 -13.82 9.67 84.03 0.81 -13.01 16 15 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 16 C -0.05 -2.77 5.38 84.86 0.46 -2.31 16 17 N -0.94 -55.52 10.13 21.65 0.22 -55.30 16 18 Si 0.96 45.56 29.56 68.60 2.03 47.58 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 C -0.08 -2.60 9.69 22.25 0.22 -2.39 16 23 C -0.20 -5.65 9.04 22.36 0.20 -5.45 16 24 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 26 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 27 H 0.14 1.82 7.66 -2.39 -0.02 1.80 16 28 H 0.13 2.00 7.66 -2.39 -0.02 1.98 16 29 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 30 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.06 2.12 7.98 -2.39 -0.02 2.10 16 32 H 0.07 2.37 7.80 -2.39 -0.02 2.35 16 33 H 0.00 -0.15 7.43 -2.38 -0.02 -0.17 16 34 H 0.03 1.13 7.83 -2.38 -0.02 1.11 16 35 H 0.02 1.29 7.04 -2.39 -0.02 1.27 16 36 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 37 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 38 H 0.16 3.07 6.30 -2.91 -0.02 3.05 16 Total: -1.00 -72.12 329.18 6.34 -65.78 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 1.05 Total: 7.63 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.96 Total: -0.51 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -1.91 Total: -87.63 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.79 Total: -32.85 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -72.12 6.34 -65.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183075306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.327 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds