Wall clock time and date at job start Fri Apr 10 2020 17:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21595 * 119.99599 * 0.02562 * 14 13 3 16 16 C 1.47546 * 120.00578 * 180.02562 * 14 13 3 17 17 C 1.39799 * 120.16142 * 0.02562 * 16 14 13 18 18 C 1.37753 * 119.99971 * 180.02562 * 17 16 14 19 19 C 1.38543 * 120.34162 * 0.02562 * 18 17 16 20 20 C 1.50702 * 119.82923 * 179.97438 * 19 18 17 21 21 C 1.38426 * 120.33687 * 359.95672 * 19 18 17 22 22 O 1.36003 * 120.00639 * 180.02562 * 21 19 18 23 23 C 1.39180 * 119.99049 * 359.76587 * 21 19 18 24 24 O 1.35742 * 120.16845 * 180.25407 * 23 21 19 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 32 32 H 1.07992 * 120.00329 * 0.02562 * 17 16 14 33 33 H 1.08003 * 119.83115 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.46974 * 90.00608 * 20 19 18 35 35 H 1.09003 * 109.47023 * 210.00369 * 20 19 18 36 36 H 1.08998 * 109.47178 * 330.00210 * 20 19 18 37 37 H 0.96702 * 113.99621 * 89.99712 * 22 21 19 38 38 H 0.96703 * 114.00286 * 270.27096 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6318 0.4319 16 6 0.0449 3.3246 2.6274 17 6 0.9354 3.3646 3.7043 18 6 0.5675 3.9813 4.8798 19 6 -0.6835 4.5639 5.0027 20 6 -1.0743 5.2351 6.2942 21 6 -1.5762 4.5328 3.9452 22 8 -2.8023 5.1073 4.0730 23 6 -1.2167 3.9184 2.7492 24 8 -2.0873 3.8904 1.7081 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 2.2719 2.1232 1.9977 32 1 1.9118 2.9119 3.6148 33 1 1.2574 4.0102 5.7102 34 1 -0.7885 6.2863 6.2583 35 1 -2.1526 5.1562 6.4329 36 1 -0.5645 4.7481 7.1255 37 1 -2.8298 6.0379 3.8115 38 1 -2.6703 3.1189 1.7034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183961083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:24 Heat of formation + Delta-G solvation = -104.805052 kcal Electronic energy + Delta-G solvation = -21976.183289 eV Core-core repulsion = 18590.875686 eV Total energy + Delta-G solvation = -3385.307603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.48722 -38.71168 -36.85731 -36.52349 -34.93570 -32.77020 -32.03548 -30.75689 -29.21822 -27.73116 -26.53879 -23.25486 -22.57533 -22.29364 -20.49761 -19.40917 -18.52936 -17.93975 -16.98998 -16.42249 -15.78544 -15.44951 -15.13145 -14.71268 -14.42075 -14.19657 -13.88830 -13.57852 -13.21155 -12.79311 -12.65275 -12.46695 -12.18203 -11.90389 -11.61797 -11.43767 -11.25611 -11.17870 -10.99363 -10.81944 -10.38616 -10.27265 -10.17055 -9.62951 -9.06356 -8.95445 -8.67489 -8.58958 -8.49478 -7.79619 -6.12269 -4.21858 0.83435 1.10209 3.07667 3.25385 3.30880 3.31786 3.84473 4.00750 4.18082 4.35601 4.38907 4.68034 4.91633 5.05316 5.18989 5.31149 5.36611 5.40124 5.56358 5.70220 5.89656 6.14445 6.22016 6.30741 6.39215 6.45729 6.55364 6.66253 7.04231 7.20179 7.36495 7.43605 7.45266 7.61915 7.73539 7.86852 7.90593 8.17968 8.66106 8.77754 9.13191 9.45460 10.93067 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026817 B = 0.004427 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.856823 B = 6323.711433 C = 6999.188596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.703 5.703 14 C 0.541 3.459 15 O -0.528 6.528 16 C -0.145 4.145 17 C -0.078 4.078 18 C -0.126 4.126 19 C -0.084 4.084 20 C -0.113 4.113 21 C 0.063 3.937 22 O -0.488 6.488 23 C 0.144 3.856 24 O -0.469 6.469 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.386 0.614 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.388 0.612 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 7.189 15.293 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.351 5.351 14 C 0.326 3.674 15 O -0.406 6.406 16 C -0.148 4.148 17 C -0.096 4.096 18 C -0.144 4.144 19 C -0.085 4.085 20 C -0.169 4.169 21 C 0.018 3.982 22 O -0.298 6.298 23 C 0.096 3.904 24 O -0.280 6.280 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.244 0.756 38 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.454 7.005 14.421 17.680 hybrid contribution 1.260 -0.006 0.184 1.273 sum -6.194 6.999 14.605 17.339 Atomic orbital electron populations 1.21841 0.98387 0.98010 1.01201 1.21936 0.92613 0.99766 1.02290 1.18801 0.94215 0.89158 0.80870 0.93178 1.21188 0.90670 1.39174 1.06368 0.92171 1.24879 0.98594 0.94776 0.95351 1.69885 1.35222 1.37492 1.09296 0.86514 0.84854 0.78307 0.77454 1.20172 1.21122 1.20188 1.46453 1.14346 1.55763 1.18582 1.17894 0.83272 0.79635 0.86572 1.90778 1.51224 1.59240 1.39406 1.20762 0.95491 1.02223 0.96370 1.21351 0.99131 0.97214 0.91951 1.20869 0.95705 0.99614 0.98200 1.20239 0.93220 0.98878 0.96128 1.20723 1.02757 1.00013 0.93454 1.18547 0.86073 1.01885 0.91740 1.84772 1.26661 1.29804 1.88514 1.18870 0.89471 0.96267 0.85754 1.84705 1.50363 1.48504 1.44412 0.95863 0.93058 0.94412 0.95051 0.88233 0.92490 0.78074 0.84705 0.85001 0.91054 0.90741 0.91191 0.75628 0.74753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.00 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.70 -14.71 4.97 -55.97 -0.28 -14.99 16 14 C 0.54 11.12 6.33 -12.46 -0.08 11.05 16 15 O -0.53 -12.47 12.29 -16.62 -0.20 -12.67 16 16 C -0.14 -2.39 5.88 -104.87 -0.62 -3.01 16 17 C -0.08 -1.03 9.53 -39.18 -0.37 -1.40 16 18 C -0.13 -1.38 9.67 -39.65 -0.38 -1.76 16 19 C -0.08 -0.93 5.89 -104.44 -0.62 -1.54 16 20 C -0.11 -0.90 9.78 36.01 0.35 -0.55 16 21 C 0.06 0.81 6.68 -39.16 -0.26 0.55 16 22 O -0.49 -5.45 12.30 -34.28 -0.42 -5.87 16 23 C 0.14 2.25 6.73 -38.58 -0.26 1.99 16 24 O -0.47 -7.69 11.36 -47.53 -0.54 -8.23 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.04 0.82 5.64 -51.93 -0.29 0.52 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 6.98 6.57 -40.82 -0.27 6.72 16 32 H 0.14 1.58 6.40 -52.49 -0.34 1.25 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.60 7.51 -51.93 -0.39 0.21 16 36 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 37 H 0.39 2.80 9.06 45.56 0.41 3.22 16 38 H 0.39 5.25 9.06 45.56 0.41 5.66 16 LS Contribution 316.03 15.07 4.76 4.76 Total: -1.00 -32.23 316.03 -6.92 -39.15 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -3.22 Total: 13.04 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.62 Total: -6.66 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.35 Total: -38.99 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -1.17 Total: -26.77 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.23 -6.92 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183961083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.655 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds