Wall clock time and date at job start Fri Apr 10 2020 17:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21595 * 119.99599 * 0.02562 * 14 13 3 16 16 C 1.47546 * 120.00578 * 180.02562 * 14 13 3 17 17 C 1.39799 * 120.16142 * 0.02562 * 16 14 13 18 18 C 1.37753 * 119.99971 * 180.02562 * 17 16 14 19 19 C 1.38543 * 120.34162 * 0.02562 * 18 17 16 20 20 C 1.50702 * 119.82923 * 179.97438 * 19 18 17 21 21 C 1.38426 * 120.33687 * 359.95672 * 19 18 17 22 22 O 1.36003 * 120.00639 * 180.02562 * 21 19 18 23 23 C 1.39180 * 119.99049 * 359.76587 * 21 19 18 24 24 O 1.35742 * 120.16845 * 180.25407 * 23 21 19 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 32 32 H 1.07992 * 120.00329 * 0.02562 * 17 16 14 33 33 H 1.08003 * 119.83115 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.46974 * 90.00608 * 20 19 18 35 35 H 1.09003 * 109.47023 * 210.00369 * 20 19 18 36 36 H 1.08998 * 109.47178 * 330.00210 * 20 19 18 37 37 H 0.96702 * 113.99621 * 89.99712 * 22 21 19 38 38 H 0.96703 * 114.00286 * 270.27096 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6318 0.4319 16 6 0.0449 3.3246 2.6274 17 6 0.9354 3.3646 3.7043 18 6 0.5675 3.9813 4.8798 19 6 -0.6835 4.5639 5.0027 20 6 -1.0743 5.2351 6.2942 21 6 -1.5762 4.5328 3.9452 22 8 -2.8023 5.1073 4.0730 23 6 -1.2167 3.9184 2.7492 24 8 -2.0873 3.8904 1.7081 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 2.2719 2.1232 1.9977 32 1 1.9118 2.9119 3.6148 33 1 1.2574 4.0102 5.7102 34 1 -0.7885 6.2863 6.2583 35 1 -2.1526 5.1562 6.4329 36 1 -0.5645 4.7481 7.1255 37 1 -2.8298 6.0379 3.8115 38 1 -2.6703 3.1189 1.7034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183961083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:22 Heat of formation + Delta-G solvation = -128.778504 kcal Electronic energy + Delta-G solvation = -21977.222856 eV Core-core repulsion = 18590.875686 eV Total energy + Delta-G solvation = -3386.347170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.64311 -40.18095 -38.02453 -37.51840 -36.77992 -34.38907 -33.50506 -32.40688 -30.23561 -29.25543 -27.95299 -25.09262 -23.64325 -23.54086 -22.01588 -21.15008 -19.87706 -19.02781 -18.50855 -17.63143 -17.37544 -16.85043 -16.57748 -16.16212 -16.02658 -15.57556 -14.91996 -14.81770 -14.57282 -14.27741 -13.86367 -13.66808 -13.47489 -13.33978 -13.17302 -12.90467 -12.70166 -12.65655 -12.55104 -12.19304 -12.18168 -12.06606 -11.59722 -11.44479 -11.06488 -10.59380 -10.47572 -9.78977 -9.60302 -9.52006 -8.15683 -6.33522 -0.25387 0.11769 1.45386 1.47467 1.55191 1.90821 2.33445 2.55991 2.68579 3.08264 3.13980 3.38026 3.77356 3.90294 4.08114 4.26624 4.47864 4.55686 4.56795 4.60328 4.74834 4.83073 4.85689 5.04609 5.13314 5.20291 5.24429 5.26587 5.40073 5.42978 5.55170 5.61233 5.68700 5.79234 5.93188 6.16162 6.60291 6.73645 6.84525 6.97723 7.33188 7.56218 8.89648 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026817 B = 0.004427 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.856823 B = 6323.711433 C = 6999.188596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.004 1.004 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.700 5.700 14 C 0.538 3.462 15 O -0.570 6.570 16 C -0.175 4.175 17 C -0.076 4.076 18 C -0.115 4.115 19 C -0.071 4.071 20 C -0.111 4.111 21 C 0.062 3.938 22 O -0.492 6.492 23 C 0.121 3.879 24 O -0.490 6.490 25 H 0.046 0.954 26 H 0.025 0.975 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.148 0.852 33 H 0.172 0.828 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.406 0.594 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 8.043 18.707 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.589 4.589 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.350 5.350 14 C 0.326 3.674 15 O -0.451 6.451 16 C -0.178 4.178 17 C -0.095 4.095 18 C -0.132 4.132 19 C -0.072 4.072 20 C -0.167 4.167 21 C 0.017 3.983 22 O -0.304 6.304 23 C 0.074 3.926 24 O -0.301 6.301 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.165 0.835 33 H 0.189 0.811 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.264 0.736 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -6.367 7.883 17.881 20.552 hybrid contribution 0.823 -0.184 -0.797 1.160 sum -5.544 7.699 17.084 19.542 Atomic orbital electron populations 1.21669 0.97070 0.99102 1.00139 1.21781 0.93705 0.99057 1.01365 1.18383 0.93772 0.89157 0.81089 0.98592 1.21546 0.91273 1.39147 1.06888 0.90954 1.25781 1.03416 0.94284 0.94927 1.70048 1.37198 1.38254 1.09817 0.85408 0.78945 0.78428 0.77614 1.18722 1.21236 1.19718 1.46181 1.15184 1.55926 1.17686 1.18528 0.82356 0.78800 0.87707 1.90745 1.52254 1.60700 1.41372 1.20475 0.97126 1.04724 0.95512 1.21537 0.99011 0.97228 0.91741 1.21284 0.96168 0.97662 0.98118 1.20688 0.92584 0.97307 0.96638 1.20825 1.02999 1.00899 0.91998 1.18569 0.86898 1.01686 0.91182 1.84731 1.25995 1.31276 1.88357 1.19188 0.89241 0.97473 0.86679 1.84663 1.50821 1.49066 1.45599 0.93500 0.95576 0.94005 0.93968 0.90875 0.92584 0.76310 0.83459 0.81063 0.89189 0.90830 0.89107 0.73593 0.74067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.51 71.98 0.61 -5.04 16 2 C -0.12 -6.02 5.45 30.60 0.17 -5.85 16 3 C 0.28 14.62 2.24 44.25 0.10 14.72 16 4 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 5 C -0.55 -29.29 8.73 25.60 0.22 -29.07 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.87 5.29 84.66 0.45 1.32 16 8 N -0.92 -52.69 11.29 21.45 0.24 -52.45 16 9 Si 0.97 41.98 29.54 68.60 2.03 44.01 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 N -0.70 -29.95 4.97 -449.26 -2.23 -32.19 16 14 C 0.54 22.90 6.33 86.70 0.55 23.45 16 15 O -0.57 -28.50 12.29 16.93 0.21 -28.29 16 16 C -0.17 -5.77 5.88 -20.02 -0.12 -5.89 16 17 C -0.08 -1.86 9.53 22.53 0.21 -1.65 16 18 C -0.11 -2.06 9.67 22.23 0.21 -1.84 16 19 C -0.07 -1.32 5.89 -19.75 -0.12 -1.44 16 20 C -0.11 -1.24 9.78 71.24 0.70 -0.55 16 21 C 0.06 1.49 6.68 22.54 0.15 1.64 16 22 O -0.49 -10.06 12.30 -79.70 -0.98 -11.04 16 23 C 0.12 3.80 6.73 22.92 0.15 3.95 16 24 O -0.49 -16.74 11.36 -63.32 -0.72 -17.46 16 25 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.03 1.29 7.84 -2.39 -0.02 1.27 16 27 H 0.04 1.87 5.64 -2.38 -0.01 1.85 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 4.08 5.95 -2.39 -0.01 4.06 16 30 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.40 14.39 6.57 -92.71 -0.61 13.78 16 32 H 0.15 3.11 6.40 -2.91 -0.02 3.09 16 33 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.90 7.51 -2.39 -0.02 0.88 16 36 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 37 H 0.41 5.06 9.06 -74.06 -0.67 4.39 16 38 H 0.40 11.45 9.06 -74.06 -0.67 10.78 16 Total: -1.00 -73.00 316.03 1.01 -71.99 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -0.83 Total: 31.68 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 3.30 Total: -6.25 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.99 Total: -84.64 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -1.49 Total: -56.78 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -73.00 1.01 -71.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183961083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.793 kcal (2) G-P(sol) polarization free energy of solvation -72.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds