Wall clock time and date at job start Fri Apr 10 2020 17:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34571 * 119.46792 * 2 1 4 4 C 1.38070 * 120.44752 * 180.02562 * 3 2 1 5 5 C 1.47311 * 120.26438 * 179.97438 * 4 3 2 6 6 O 1.21529 * 119.99841 * 0.02806 * 5 4 3 7 7 O 1.34767 * 119.99932 * 180.02562 * 5 4 3 8 8 C 1.45201 * 116.99969 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47166 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47161 * 299.99897 * 9 8 7 11 11 C 1.53002 * 109.47295 * 59.99832 * 9 8 7 12 12 C 1.50703 * 109.47096 * 179.97438 * 9 8 7 13 13 H 1.08001 * 119.99975 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99879 * 180.02562 * 12 9 8 15 15 N 1.31512 * 120.00321 * 359.97438 * 14 12 9 16 16 Si 1.86809 * 119.99811 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47050 * 59.99571 * 16 14 12 18 18 H 1.48493 * 109.47028 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46797 * 299.99917 * 16 14 12 20 20 C 1.41650 * 119.47285 * 359.97438 * 4 3 2 21 21 C 1.35956 * 119.00308 * 359.97438 * 20 4 3 22 22 C 1.34538 * 119.47893 * 180.23742 * 2 1 3 23 23 O 1.21955 * 119.73593 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.46774 * 90.00289 * 1 2 3 25 25 H 1.09008 * 109.46863 * 209.99853 * 1 2 3 26 26 H 1.08997 * 109.47583 * 329.99941 * 1 2 3 27 27 H 1.07991 * 119.77263 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47012 * 300.00248 * 8 7 5 29 29 H 1.08996 * 109.47339 * 59.99622 * 8 7 5 30 30 H 1.09001 * 109.47161 * 60.00075 * 10 9 8 31 31 H 1.09000 * 109.47181 * 180.02562 * 10 9 8 32 32 H 1.09004 * 109.46837 * 300.00175 * 10 9 8 33 33 H 1.09004 * 109.46985 * 59.99976 * 11 9 8 34 34 H 1.09000 * 109.47075 * 179.97438 * 11 9 8 35 35 H 1.08995 * 109.46919 * 300.00384 * 11 9 8 36 36 H 0.96999 * 120.00244 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.49967 * 180.02562 * 20 4 3 38 38 H 1.08002 * 120.24590 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1270 1.1716 0.0000 4 6 3.5075 1.1952 -0.0005 5 6 4.2281 2.4801 -0.0011 6 8 3.6073 3.5248 -0.0006 7 8 5.5757 2.4969 -0.0021 8 6 6.2187 3.7987 -0.0021 9 6 7.7379 3.6172 -0.0040 10 6 8.1602 2.8398 1.2443 11 6 8.1573 2.8413 -1.2542 12 6 8.4052 4.9684 -0.0045 13 1 7.8057 5.8668 -0.0040 14 6 9.7811 5.0578 -0.0067 15 7 10.5111 3.9639 -0.0079 16 14 10.6083 6.7327 -0.0067 17 1 10.2018 7.4855 1.2070 18 1 12.0827 6.5566 -0.0087 19 1 10.1978 7.4875 -1.2179 20 6 4.2254 -0.0259 -0.0005 21 6 3.5345 -1.1968 0.0005 22 6 2.1271 -1.1712 -0.0049 23 8 1.5029 -2.2189 -0.0097 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.5747 2.0996 0.0004 28 1 5.9181 4.3525 -0.8916 29 1 5.9195 4.3517 0.8883 30 1 7.6775 1.8625 1.2442 31 1 9.2425 2.7109 1.2431 32 1 7.8613 3.3926 2.1349 33 1 7.8564 3.3952 -2.1435 34 1 9.2396 2.7124 -1.2557 35 1 7.6745 1.8641 -1.2542 36 1 11.4790 4.0267 -0.0090 37 1 5.3055 -0.0268 -0.0005 38 1 4.0616 -2.1395 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184766447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:26 Heat of formation + Delta-G solvation = -92.089712 kcal Electronic energy + Delta-G solvation = -21545.102960 eV Core-core repulsion = 18160.346735 eV Total energy + Delta-G solvation = -3384.756224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71438 -39.82735 -37.27107 -36.48955 -35.03914 -34.77105 -31.31035 -30.37247 -28.24436 -26.04441 -25.64393 -25.24981 -24.30697 -23.29819 -21.20491 -18.89725 -18.28832 -17.55792 -17.02348 -16.49970 -16.12441 -15.81934 -15.72632 -15.55817 -14.72130 -14.50673 -13.59955 -13.52106 -13.16096 -13.14488 -12.93742 -12.81406 -12.32094 -11.94320 -11.81573 -11.49021 -11.21163 -10.97497 -10.76261 -10.44324 -10.41538 -10.38746 -10.24615 -10.15976 -9.93603 -9.44498 -9.35795 -8.79457 -8.39634 -8.30187 -6.04156 -4.16037 0.50111 1.12947 2.14380 2.79350 3.17172 3.27976 3.32802 3.36732 3.52089 4.24632 4.33512 4.39427 4.65587 4.78058 4.82741 4.88093 5.15639 5.21504 5.22348 5.71032 5.80146 5.96078 6.04268 6.06837 6.17045 6.43265 6.62126 6.71257 6.95592 6.98802 7.11037 7.11378 7.37295 7.59623 7.65204 7.67767 8.02956 8.08912 8.18363 8.36451 8.83650 9.49683 10.96971 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.041683 B = 0.003518 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.583265 B = 7958.004986 C = 8433.221688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.493 5.493 3 C 0.207 3.793 4 C -0.226 4.226 5 C 0.517 3.483 6 O -0.526 6.526 7 O -0.341 6.341 8 C 0.086 3.914 9 C 0.070 3.930 10 C -0.130 4.130 11 C -0.130 4.130 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.069 3.931 15 N -0.882 5.882 16 Si 0.895 3.105 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.023 3.977 21 C -0.252 4.252 22 C 0.515 3.485 23 O -0.545 6.545 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.181 0.819 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.084 0.916 35 H 0.017 0.983 36 H 0.262 0.738 37 H 0.154 0.846 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.271 -6.754 0.088 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.201 5.201 3 C 0.074 3.926 4 C -0.233 4.233 5 C 0.362 3.638 6 O -0.418 6.418 7 O -0.257 6.257 8 C 0.014 3.986 9 C 0.070 3.930 10 C -0.187 4.187 11 C -0.187 4.187 12 C -0.552 4.552 13 H 0.075 0.925 14 C -0.133 4.133 15 N -0.520 5.520 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.002 3.998 21 C -0.274 4.274 22 C 0.318 3.682 23 O -0.427 6.427 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.198 0.802 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.103 0.897 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.172 0.828 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.651 -7.207 0.088 17.231 hybrid contribution 0.477 1.241 -0.021 1.330 sum -15.174 -5.966 0.067 16.305 Atomic orbital electron populations 1.22305 0.76350 1.05523 1.04504 1.45218 1.09896 1.06774 1.58181 1.22271 0.92784 0.90123 0.87377 1.18732 0.91582 0.93175 1.19792 1.20380 0.82504 0.87888 0.73000 1.90810 1.69122 1.34226 1.47668 1.86560 1.18359 1.38317 1.82437 1.23729 0.95297 0.78856 1.00761 1.18253 0.85002 0.95951 0.93813 1.21773 1.03952 0.96182 0.96815 1.21775 1.03957 0.96181 0.96815 1.20894 0.91417 0.90985 1.51900 0.92530 1.24847 0.97148 0.96642 0.94635 1.69811 1.05516 1.26785 1.49868 0.86603 0.78233 0.84163 0.78682 1.20241 1.21216 1.20238 1.21729 1.01991 0.90167 0.85943 1.22018 0.91954 1.00373 1.13020 1.17358 0.89637 0.82450 0.78725 1.90929 1.69612 1.29928 1.52248 0.90030 0.88305 0.89099 0.80240 0.92364 0.92358 0.96430 0.89739 0.95813 0.95816 0.89731 0.96436 0.92813 0.82802 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.34 10.33 59.85 0.62 0.95 16 2 N -0.49 -4.83 2.95 -126.72 -0.37 -5.20 16 3 C 0.21 2.04 9.85 -16.41 -0.16 1.88 16 4 C -0.23 -2.86 5.87 -104.97 -0.62 -3.47 16 5 C 0.52 8.45 7.89 34.42 0.27 8.72 16 6 O -0.53 -9.52 16.11 -19.29 -0.31 -9.83 16 7 O -0.34 -6.34 8.18 -40.67 -0.33 -6.67 16 8 C 0.09 1.82 4.27 37.16 0.16 1.97 16 9 C 0.07 1.66 0.58 -155.66 -0.09 1.57 16 10 C -0.13 -3.00 8.11 37.16 0.30 -2.70 16 11 C -0.13 -3.01 8.11 37.16 0.30 -2.70 16 12 C -0.51 -13.37 8.01 -34.44 -0.28 -13.65 16 13 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 15 N -0.88 -23.47 9.35 55.43 0.52 -22.95 16 16 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.02 0.27 9.66 -39.10 -0.38 -0.11 16 21 C -0.25 -2.93 9.97 -39.45 -0.39 -3.33 16 22 C 0.52 6.51 7.40 -15.41 -0.11 6.39 16 23 O -0.55 -8.41 16.59 4.96 0.08 -8.33 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.10 0.69 7.37 -51.92 -0.38 0.31 16 26 H 0.09 0.31 8.00 -51.93 -0.42 -0.11 16 27 H 0.18 1.36 7.56 -52.49 -0.40 0.97 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 31 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 35 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 36 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.15 1.78 7.68 -52.49 -0.40 1.37 16 38 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -30.65 322.14 -6.16 -36.81 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.10 Total: -1.34 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -0.47 Total: -2.76 kcal Atomic # 7 Polarization: -28.29 SS G_CDS: 0.14 Total: -28.15 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.56 Total: -24.83 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.65 -6.16 -36.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184766447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.280 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds