Wall clock time and date at job start Fri Apr 10 2020 17:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34571 * 119.46792 * 2 1 4 4 C 1.38070 * 120.44752 * 180.02562 * 3 2 1 5 5 C 1.47311 * 120.26438 * 179.97438 * 4 3 2 6 6 O 1.21529 * 119.99841 * 0.02806 * 5 4 3 7 7 O 1.34767 * 119.99932 * 180.02562 * 5 4 3 8 8 C 1.45201 * 116.99969 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47166 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47161 * 299.99897 * 9 8 7 11 11 C 1.53002 * 109.47295 * 59.99832 * 9 8 7 12 12 C 1.50703 * 109.47096 * 179.97438 * 9 8 7 13 13 H 1.08001 * 119.99975 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99879 * 180.02562 * 12 9 8 15 15 N 1.31512 * 120.00321 * 359.97438 * 14 12 9 16 16 Si 1.86809 * 119.99811 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47050 * 59.99571 * 16 14 12 18 18 H 1.48493 * 109.47028 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46797 * 299.99917 * 16 14 12 20 20 C 1.41650 * 119.47285 * 359.97438 * 4 3 2 21 21 C 1.35956 * 119.00308 * 359.97438 * 20 4 3 22 22 C 1.34538 * 119.47893 * 180.23742 * 2 1 3 23 23 O 1.21955 * 119.73593 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.46774 * 90.00289 * 1 2 3 25 25 H 1.09008 * 109.46863 * 209.99853 * 1 2 3 26 26 H 1.08997 * 109.47583 * 329.99941 * 1 2 3 27 27 H 1.07991 * 119.77263 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47012 * 300.00248 * 8 7 5 29 29 H 1.08996 * 109.47339 * 59.99622 * 8 7 5 30 30 H 1.09001 * 109.47161 * 60.00075 * 10 9 8 31 31 H 1.09000 * 109.47181 * 180.02562 * 10 9 8 32 32 H 1.09004 * 109.46837 * 300.00175 * 10 9 8 33 33 H 1.09004 * 109.46985 * 59.99976 * 11 9 8 34 34 H 1.09000 * 109.47075 * 179.97438 * 11 9 8 35 35 H 1.08995 * 109.46919 * 300.00384 * 11 9 8 36 36 H 0.96999 * 120.00244 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.49967 * 180.02562 * 20 4 3 38 38 H 1.08002 * 120.24590 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1270 1.1716 0.0000 4 6 3.5075 1.1952 -0.0005 5 6 4.2281 2.4801 -0.0011 6 8 3.6073 3.5248 -0.0006 7 8 5.5757 2.4969 -0.0021 8 6 6.2187 3.7987 -0.0021 9 6 7.7379 3.6172 -0.0040 10 6 8.1602 2.8398 1.2443 11 6 8.1573 2.8413 -1.2542 12 6 8.4052 4.9684 -0.0045 13 1 7.8057 5.8668 -0.0040 14 6 9.7811 5.0578 -0.0067 15 7 10.5111 3.9639 -0.0079 16 14 10.6083 6.7327 -0.0067 17 1 10.2018 7.4855 1.2070 18 1 12.0827 6.5566 -0.0087 19 1 10.1978 7.4875 -1.2179 20 6 4.2254 -0.0259 -0.0005 21 6 3.5345 -1.1968 0.0005 22 6 2.1271 -1.1712 -0.0049 23 8 1.5029 -2.2189 -0.0097 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.5747 2.0996 0.0004 28 1 5.9181 4.3525 -0.8916 29 1 5.9195 4.3517 0.8883 30 1 7.6775 1.8625 1.2442 31 1 9.2425 2.7109 1.2431 32 1 7.8613 3.3926 2.1349 33 1 7.8564 3.3952 -2.1435 34 1 9.2396 2.7124 -1.2557 35 1 7.6745 1.8641 -1.2542 36 1 11.4790 4.0267 -0.0090 37 1 5.3055 -0.0268 -0.0005 38 1 4.0616 -2.1395 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184766447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:26 Heat of formation + Delta-G solvation = -108.738527 kcal Electronic energy + Delta-G solvation = -21545.824906 eV Core-core repulsion = 18160.346735 eV Total energy + Delta-G solvation = -3385.478171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.64030 -41.17862 -38.50000 -37.89108 -36.55204 -35.79617 -33.22555 -31.37590 -28.96129 -27.58517 -27.52087 -27.11720 -25.47242 -24.21785 -22.42738 -20.68535 -19.39064 -18.58036 -18.12262 -17.67605 -17.46842 -17.31964 -17.02864 -16.81584 -16.36656 -15.36428 -14.98291 -14.73800 -14.71899 -14.32347 -14.19774 -13.66453 -13.44706 -13.31865 -13.22722 -12.98823 -12.86596 -12.70665 -12.62822 -12.28494 -12.11431 -11.69247 -11.67063 -11.29748 -11.24813 -11.19607 -11.14638 -10.69920 -10.36667 -9.25321 -8.01459 -6.19385 -0.36682 0.10038 1.27607 1.46919 1.47718 1.54447 1.62330 1.94536 2.48162 2.54218 3.22241 3.47714 3.57369 3.69154 3.83359 4.05723 4.32341 4.34501 4.36689 4.39139 4.66160 4.74260 4.80564 4.92591 4.94132 5.05141 5.10424 5.24028 5.28031 5.28689 5.41462 5.61394 5.68639 5.68897 5.75545 6.13054 6.22489 6.40875 6.70785 6.77141 6.87111 7.48706 8.97678 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.041683 B = 0.003518 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.583265 B = 7958.004986 C = 8433.221688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.485 5.485 3 C 0.241 3.759 4 C -0.249 4.249 5 C 0.519 3.481 6 O -0.546 6.546 7 O -0.347 6.347 8 C 0.099 3.901 9 C 0.060 3.940 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.534 4.534 13 H 0.051 0.949 14 C 0.029 3.971 15 N -0.900 5.900 16 Si 0.950 3.050 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.029 3.971 21 C -0.260 4.260 22 C 0.509 3.491 23 O -0.578 6.578 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.127 0.873 27 H 0.211 0.789 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.061 0.939 35 H 0.035 0.965 36 H 0.261 0.739 37 H 0.155 0.845 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.847 -6.444 0.085 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.191 5.191 3 C 0.106 3.894 4 C -0.256 4.256 5 C 0.366 3.634 6 O -0.439 6.439 7 O -0.263 6.263 8 C 0.026 3.974 9 C 0.060 3.940 10 C -0.177 4.177 11 C -0.177 4.177 12 C -0.572 4.572 13 H 0.069 0.931 14 C -0.172 4.172 15 N -0.538 5.538 16 Si 0.776 3.224 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C 0.008 3.992 21 C -0.281 4.281 22 C 0.313 3.687 23 O -0.463 6.463 24 H 0.115 0.885 25 H 0.108 0.892 26 H 0.145 0.855 27 H 0.228 0.772 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.172 0.828 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.251 -6.900 0.084 18.581 hybrid contribution 0.847 1.113 -0.021 1.398 sum -16.404 -5.788 0.063 17.396 Atomic orbital electron populations 1.22660 0.73794 1.06928 1.05996 1.45339 1.11496 1.05964 1.56287 1.22591 0.91947 0.90924 0.83929 1.18520 0.92582 0.91473 1.22983 1.20837 0.81499 0.88981 0.72043 1.90798 1.69044 1.35239 1.48846 1.86532 1.20010 1.36639 1.83079 1.23267 0.93981 0.79909 1.00229 1.18268 0.86712 0.95047 0.93963 1.21623 1.02430 0.97050 0.96565 1.21624 1.02436 0.97047 0.96567 1.21203 0.91933 0.91989 1.52082 0.93071 1.25488 0.97708 0.99490 0.94474 1.69933 1.05524 1.28147 1.50159 0.85743 0.77313 0.80723 0.78610 1.19992 1.20957 1.19987 1.21690 1.02052 0.89979 0.85528 1.22060 0.91824 1.00692 1.13524 1.17526 0.89974 0.82777 0.78440 1.90915 1.70274 1.31196 1.53896 0.88511 0.89181 0.85503 0.77233 0.92903 0.92881 0.94630 0.92058 0.96146 0.96159 0.92047 0.94639 0.92925 0.82774 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.42 10.33 127.77 1.32 1.74 16 2 N -0.49 -8.15 2.95 -673.06 -1.99 -10.14 16 3 C 0.24 3.98 9.85 84.23 0.83 4.81 16 4 C -0.25 -5.78 5.87 -20.09 -0.12 -5.90 16 5 C 0.52 16.16 7.89 70.21 0.55 16.72 16 6 O -0.55 -18.85 16.11 19.74 0.32 -18.53 16 7 O -0.35 -12.52 8.18 -56.78 -0.46 -12.99 16 8 C 0.10 4.14 4.27 71.98 0.31 4.45 16 9 C 0.06 2.85 0.58 -52.93 -0.03 2.81 16 10 C -0.12 -5.49 8.11 71.98 0.58 -4.91 16 11 C -0.12 -5.50 8.11 71.98 0.58 -4.92 16 12 C -0.53 -27.87 8.01 25.60 0.21 -27.66 16 13 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 14 C 0.03 1.49 5.15 84.65 0.44 1.92 16 15 N -0.90 -48.18 9.35 21.45 0.20 -47.98 16 16 Si 0.95 41.80 29.54 68.60 2.03 43.83 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 C 0.03 0.64 9.66 22.58 0.22 0.86 16 21 C -0.26 -5.73 9.97 22.36 0.22 -5.50 16 22 C 0.51 12.05 7.40 84.90 0.63 12.68 16 23 O -0.58 -17.31 16.59 -5.17 -0.09 -17.39 16 24 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.09 1.07 7.37 -2.38 -0.02 1.05 16 26 H 0.13 0.28 8.00 -2.39 -0.02 0.26 16 27 H 0.21 2.26 7.56 -2.92 -0.02 2.24 16 28 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.03 1.46 7.68 -2.39 -0.02 1.44 16 31 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 32 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 35 H 0.03 1.46 7.68 -2.39 -0.02 1.44 16 36 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 37 H 0.15 3.39 7.68 -2.91 -0.02 3.37 16 38 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -65.51 322.14 6.81 -58.70 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.06 Total: 7.41 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.74 Total: -2.90 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -1.79 Total: -58.12 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.23 Total: -48.91 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -65.51 6.81 -58.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184766447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.040 kcal (2) G-P(sol) polarization free energy of solvation -65.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds