Wall clock time and date at job start Fri Apr 10 2020 17:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35714 * 117.00605 * 2 1 4 4 C 1.39180 * 119.85449 * 0.02950 * 3 2 1 5 5 C 1.36550 * 120.37636 * 179.73575 * 4 3 2 6 6 C 1.39890 * 120.08018 * 0.51166 * 5 4 3 7 7 C 1.47200 * 120.14345 * 179.73462 * 6 5 4 8 8 O 1.21655 * 120.00507 * 179.72671 * 7 6 5 9 9 N 1.34776 * 119.99673 * 359.73333 * 7 6 5 10 10 C 1.36937 * 119.99860 * 179.72089 * 9 7 6 11 11 H 1.08003 * 119.99866 * 0.27253 * 10 9 7 12 12 C 1.39000 * 119.99979 * 180.27397 * 10 9 7 13 13 N 1.31396 * 120.00106 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99984 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47431 * 59.99688 * 14 12 10 16 16 H 1.48500 * 109.47048 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46664 * 299.99573 * 14 12 10 18 18 C 1.40381 * 119.71775 * 359.46795 * 6 5 4 19 19 O 1.35658 * 120.18603 * 180.29811 * 18 6 5 20 20 C 1.42907 * 117.00184 * 185.49336 * 19 18 6 21 21 C 1.52997 * 109.47292 * 155.04356 * 20 19 18 22 22 C 1.53002 * 109.46500 * 275.04349 * 20 19 18 23 23 C 1.38458 * 119.62972 * 0.27436 * 18 6 5 24 24 H 1.09004 * 109.47649 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47005 * 299.99680 * 1 2 3 26 26 H 1.09008 * 109.47146 * 59.99522 * 1 2 3 27 27 H 1.08007 * 119.81291 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.95856 * 180.25154 * 5 4 3 29 29 H 0.97002 * 120.00327 * 359.97438 * 9 7 6 30 30 H 0.96998 * 120.00165 * 179.97438 * 13 12 10 31 31 H 1.09006 * 109.46893 * 35.03708 * 20 19 18 32 32 H 1.09000 * 109.47275 * 59.99658 * 21 20 19 33 33 H 1.08996 * 109.47135 * 180.02562 * 21 20 19 34 34 H 1.09008 * 109.46996 * 299.99813 * 21 20 19 35 35 H 1.08994 * 109.47427 * 60.00355 * 22 20 19 36 36 H 1.09009 * 109.46345 * 180.02562 * 22 20 19 37 37 H 1.08994 * 109.47352 * 299.99447 * 22 20 19 38 38 H 1.08006 * 120.04642 * 179.97438 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2843 2.3746 0.0006 5 6 1.8933 3.5968 0.0061 6 6 3.2894 3.6845 0.0002 7 6 3.9472 5.0014 0.0002 8 8 5.1616 5.0748 0.0002 9 7 3.2042 6.1258 0.0003 10 6 3.8161 7.3508 0.0061 11 1 4.8942 7.4159 0.0060 12 6 3.0498 8.5105 0.0120 13 7 1.7383 8.4313 0.0115 14 14 3.8846 10.1816 0.0191 15 1 4.7313 10.3172 -1.1934 16 1 2.8533 11.2500 0.0254 17 1 4.7328 10.3059 1.2316 18 6 4.0604 2.5114 0.0001 19 8 5.4150 2.5855 0.0006 20 6 6.1321 1.3554 -0.1214 21 6 7.5162 1.6285 -0.7134 22 6 6.2852 0.7153 1.2598 23 6 3.4307 1.2784 0.0000 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.2061 2.3119 0.0015 28 1 1.2962 4.4968 0.0106 29 1 2.2359 6.0674 0.0001 30 1 1.2035 9.2405 0.0160 31 1 5.5836 0.6786 -0.7767 32 1 8.0646 2.3053 -0.0581 33 1 8.0630 0.6903 -0.8069 34 1 7.4070 2.0846 -1.6974 35 1 5.2992 0.5207 1.6815 36 1 6.8326 -0.2227 1.1667 37 1 6.8336 1.3920 1.9151 38 1 4.0173 0.3715 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190245105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:06 Heat of formation + Delta-G solvation = -87.921163 kcal Electronic energy + Delta-G solvation = -21823.160916 eV Core-core repulsion = 18438.585453 eV Total energy + Delta-G solvation = -3384.575462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40938 -38.99307 -37.94677 -36.07609 -33.91373 -32.86591 -31.39233 -30.43295 -29.18472 -27.46641 -27.05298 -24.97036 -23.25317 -22.30990 -20.64926 -19.51781 -18.65604 -17.83967 -16.61013 -16.31362 -15.99477 -15.76612 -15.09345 -14.71045 -14.51943 -14.30175 -13.92710 -13.49133 -13.17756 -12.95628 -12.87996 -12.48255 -12.36814 -12.15113 -11.98511 -11.91064 -11.67487 -11.48556 -11.10997 -10.95039 -10.87500 -10.55398 -10.41033 -10.29661 -10.15684 -9.46866 -8.35317 -8.26644 -7.93429 -7.67429 -6.42460 -3.75722 1.42113 1.70900 3.22097 3.23400 3.27174 3.32244 3.54840 3.70729 4.19177 4.57768 4.87849 4.89959 4.97151 5.02666 5.09686 5.09919 5.19172 5.20020 5.38709 5.42222 5.51703 5.60265 5.64616 5.73140 5.82791 5.86991 5.89539 6.11536 6.22312 6.29443 6.42928 6.61640 6.74761 6.84246 7.42033 7.55514 7.83056 8.11244 8.66660 9.21063 9.58274 10.15492 10.75509 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.005322 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.305236 B = 5260.362107 C = 6886.813829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.164 3.836 4 C -0.248 4.248 5 C -0.026 4.026 6 C -0.168 4.168 7 C 0.482 3.518 8 O -0.577 6.577 9 N -0.556 5.556 10 C -0.290 4.290 11 H 0.105 0.895 12 C 0.020 3.980 13 N -0.899 5.899 14 Si 0.933 3.067 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.209 3.791 19 O -0.259 6.259 20 C 0.067 3.933 21 C -0.145 4.145 22 C -0.179 4.179 23 C -0.257 4.257 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.128 0.872 28 H 0.137 0.863 29 H 0.391 0.609 30 H 0.273 0.727 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 -16.405 -0.100 16.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.118 3.882 4 C -0.267 4.267 5 C -0.045 4.045 6 C -0.173 4.173 7 C 0.270 3.730 8 O -0.462 6.462 9 N -0.192 5.192 10 C -0.419 4.419 11 H 0.123 0.877 12 C -0.182 4.182 13 N -0.540 5.540 14 Si 0.760 3.240 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.198 1.198 18 C 0.160 3.840 19 O -0.170 6.170 20 C 0.011 3.989 21 C -0.202 4.202 22 C -0.236 4.236 23 C -0.277 4.277 24 H 0.115 0.885 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.225 0.775 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.423 -16.186 -0.085 16.192 hybrid contribution -0.736 0.695 0.032 1.013 sum -1.159 -15.491 -0.053 15.534 Atomic orbital electron populations 1.23046 0.78450 1.03540 1.01700 1.85969 1.21376 1.27359 1.88525 1.18754 0.91436 0.83897 0.94155 1.20735 0.99899 0.92037 1.14061 1.20804 0.92931 0.97656 0.93147 1.19752 0.92484 0.93416 1.11627 1.17418 0.87310 0.83088 0.85223 1.90653 1.13024 1.86617 1.55862 1.41842 1.08982 1.04780 1.63628 1.19733 0.94050 0.81737 1.46420 0.87713 1.25296 0.95384 1.00075 0.97397 1.69592 1.04146 1.30270 1.49963 0.85882 0.78478 0.80538 0.79149 1.19827 1.20951 1.19834 1.18649 0.83121 0.91594 0.90608 1.86550 1.13869 1.30961 1.85668 1.22499 0.93709 0.85746 0.96988 1.21791 0.94230 1.02161 1.02023 1.22382 1.02934 1.00965 0.97347 1.20293 0.92407 0.97359 1.17595 0.88550 0.92488 0.92492 0.85414 0.84576 0.77457 0.91714 0.91222 0.91211 0.91107 0.91584 0.91882 0.91415 0.91271 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.80 101.05 0.99 1.24 16 2 O -0.32 -4.22 10.48 -18.85 -0.20 -4.42 16 3 C 0.16 2.51 6.69 -39.05 -0.26 2.25 16 4 C -0.25 -3.78 8.96 -39.84 -0.36 -4.14 16 5 C -0.03 -0.47 9.48 -39.57 -0.38 -0.84 16 6 C -0.17 -3.61 5.89 -104.83 -0.62 -4.23 16 7 C 0.48 12.56 7.70 -12.62 -0.10 12.46 16 8 O -0.58 -16.82 14.73 -16.67 -0.25 -17.06 16 9 N -0.56 -14.82 5.23 -12.01 -0.06 -14.88 16 10 C -0.29 -8.27 9.68 -14.99 -0.15 -8.41 16 11 H 0.11 3.11 7.15 -52.48 -0.38 2.74 16 12 C 0.02 0.55 5.50 -17.46 -0.10 0.45 16 13 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 14 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.21 4.08 6.61 -38.69 -0.26 3.83 16 19 O -0.26 -5.15 7.87 -40.58 -0.32 -5.47 16 20 C 0.07 0.96 2.85 -26.73 -0.08 0.88 16 21 C -0.14 -1.83 9.56 37.16 0.36 -1.47 16 22 C -0.18 -2.19 9.17 37.16 0.34 -1.84 16 23 C -0.26 -4.18 8.18 -39.32 -0.32 -4.50 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 26 H 0.06 0.47 7.65 -51.92 -0.40 0.07 16 27 H 0.13 1.56 6.26 -52.48 -0.33 1.23 16 28 H 0.14 2.37 6.39 -52.48 -0.34 2.04 16 29 H 0.39 9.81 5.91 -40.82 -0.24 9.57 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.07 0.89 6.32 -51.93 -0.33 0.57 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 35 H 0.06 0.79 6.91 -51.93 -0.36 0.43 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.14 1.92 5.43 -52.48 -0.29 1.63 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -33.27 319.13 -5.95 -39.22 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -4.72 Total: 9.74 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.92 Total: -4.33 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.66 Total: -38.67 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.76 Total: -26.95 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.27 -5.95 -39.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190245105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.698 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds