Wall clock time and date at job start Fri Apr 10 2020 17:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35714 * 117.00605 * 2 1 4 4 C 1.39180 * 119.85449 * 0.02950 * 3 2 1 5 5 C 1.36550 * 120.37636 * 179.73575 * 4 3 2 6 6 C 1.39890 * 120.08018 * 0.51166 * 5 4 3 7 7 C 1.47200 * 120.14345 * 179.73462 * 6 5 4 8 8 O 1.21655 * 120.00507 * 179.72671 * 7 6 5 9 9 N 1.34776 * 119.99673 * 359.73333 * 7 6 5 10 10 C 1.36937 * 119.99860 * 179.72089 * 9 7 6 11 11 H 1.08003 * 119.99866 * 0.27253 * 10 9 7 12 12 C 1.39000 * 119.99979 * 180.27397 * 10 9 7 13 13 N 1.31396 * 120.00106 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99984 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47431 * 59.99688 * 14 12 10 16 16 H 1.48500 * 109.47048 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46664 * 299.99573 * 14 12 10 18 18 C 1.40381 * 119.71775 * 359.46795 * 6 5 4 19 19 O 1.35658 * 120.18603 * 180.29811 * 18 6 5 20 20 C 1.42907 * 117.00184 * 185.49336 * 19 18 6 21 21 C 1.52997 * 109.47292 * 155.04356 * 20 19 18 22 22 C 1.53002 * 109.46500 * 275.04349 * 20 19 18 23 23 C 1.38458 * 119.62972 * 0.27436 * 18 6 5 24 24 H 1.09004 * 109.47649 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47005 * 299.99680 * 1 2 3 26 26 H 1.09008 * 109.47146 * 59.99522 * 1 2 3 27 27 H 1.08007 * 119.81291 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.95856 * 180.25154 * 5 4 3 29 29 H 0.97002 * 120.00327 * 359.97438 * 9 7 6 30 30 H 0.96998 * 120.00165 * 179.97438 * 13 12 10 31 31 H 1.09006 * 109.46893 * 35.03708 * 20 19 18 32 32 H 1.09000 * 109.47275 * 59.99658 * 21 20 19 33 33 H 1.08996 * 109.47135 * 180.02562 * 21 20 19 34 34 H 1.09008 * 109.46996 * 299.99813 * 21 20 19 35 35 H 1.08994 * 109.47427 * 60.00355 * 22 20 19 36 36 H 1.09009 * 109.46345 * 180.02562 * 22 20 19 37 37 H 1.08994 * 109.47352 * 299.99447 * 22 20 19 38 38 H 1.08006 * 120.04642 * 179.97438 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2843 2.3746 0.0006 5 6 1.8933 3.5968 0.0061 6 6 3.2894 3.6845 0.0002 7 6 3.9472 5.0014 0.0002 8 8 5.1616 5.0748 0.0002 9 7 3.2042 6.1258 0.0003 10 6 3.8161 7.3508 0.0061 11 1 4.8942 7.4159 0.0060 12 6 3.0498 8.5105 0.0120 13 7 1.7383 8.4313 0.0115 14 14 3.8846 10.1816 0.0191 15 1 4.7313 10.3172 -1.1934 16 1 2.8533 11.2500 0.0254 17 1 4.7328 10.3059 1.2316 18 6 4.0604 2.5114 0.0001 19 8 5.4150 2.5855 0.0006 20 6 6.1321 1.3554 -0.1214 21 6 7.5162 1.6285 -0.7134 22 6 6.2852 0.7153 1.2598 23 6 3.4307 1.2784 0.0000 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.2061 2.3119 0.0015 28 1 1.2962 4.4968 0.0106 29 1 2.2359 6.0674 0.0001 30 1 1.2035 9.2405 0.0160 31 1 5.5836 0.6786 -0.7767 32 1 8.0646 2.3053 -0.0581 33 1 8.0630 0.6903 -0.8069 34 1 7.4070 2.0846 -1.6974 35 1 5.2992 0.5207 1.6815 36 1 6.8326 -0.2227 1.1667 37 1 6.8336 1.3920 1.9151 38 1 4.0173 0.3715 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190245105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:05 Heat of formation + Delta-G solvation = -109.965865 kcal Electronic energy + Delta-G solvation = -21824.116846 eV Core-core repulsion = 18438.585453 eV Total energy + Delta-G solvation = -3385.531392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.74875 -40.19667 -39.77141 -37.45409 -35.97947 -34.04263 -33.34767 -31.85262 -30.59687 -28.41276 -28.04414 -26.90287 -24.57898 -23.76095 -21.84234 -21.24269 -20.25384 -19.52208 -18.16946 -17.63965 -17.30233 -16.78318 -16.64976 -16.29453 -15.82902 -15.71757 -15.62584 -15.26012 -14.68857 -14.34503 -14.15124 -13.65923 -13.58025 -13.47521 -13.23630 -13.11806 -12.95940 -12.92151 -12.71523 -12.44385 -12.11886 -12.07123 -11.94820 -11.69248 -11.52748 -11.45079 -10.32515 -10.02766 -9.63808 -9.08354 -8.48805 -5.93084 -0.00226 0.37699 1.41066 1.42763 1.52974 2.10125 2.13512 2.29875 2.39844 2.80973 3.21218 3.35668 3.68800 3.83041 3.98168 4.01931 4.12100 4.16504 4.26807 4.40674 4.46221 4.47552 4.56070 4.69314 4.79873 4.81971 4.85016 4.89668 4.99016 5.16865 5.27886 5.28151 5.31276 5.40335 5.51743 5.98927 6.30979 6.54210 6.62673 7.11185 7.53951 8.12904 8.69209 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.005322 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.305236 B = 5260.362107 C = 6886.813829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.184 3.816 4 C -0.240 4.240 5 C -0.021 4.021 6 C -0.217 4.217 7 C 0.479 3.521 8 O -0.620 6.620 9 N -0.565 5.565 10 C -0.333 4.333 11 H 0.079 0.921 12 C -0.012 4.012 13 N -0.917 5.917 14 Si 0.997 3.003 15 H -0.271 1.271 16 H -0.266 1.266 17 H -0.272 1.272 18 C 0.204 3.796 19 O -0.299 6.299 20 C 0.054 3.946 21 C -0.143 4.143 22 C -0.172 4.172 23 C -0.256 4.256 24 H 0.126 0.874 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.166 0.834 28 H 0.136 0.864 29 H 0.395 0.605 30 H 0.280 0.720 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 -18.712 -0.133 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.137 3.863 4 C -0.259 4.259 5 C -0.040 4.040 6 C -0.221 4.221 7 C 0.269 3.731 8 O -0.507 6.507 9 N -0.202 5.202 10 C -0.462 4.462 11 H 0.097 0.903 12 C -0.212 4.212 13 N -0.558 5.558 14 Si 0.820 3.180 15 H -0.197 1.197 16 H -0.190 1.190 17 H -0.197 1.197 18 C 0.155 3.845 19 O -0.211 6.211 20 C -0.001 4.001 21 C -0.200 4.200 22 C -0.229 4.229 23 C -0.276 4.276 24 H 0.144 0.856 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.183 0.817 28 H 0.153 0.847 29 H 0.231 0.769 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.972 -18.526 -0.119 18.631 hybrid contribution -0.355 1.137 0.035 1.191 sum -2.327 -17.389 -0.084 17.544 Atomic orbital electron populations 1.23478 0.75803 1.06032 1.02761 1.85998 1.23983 1.25772 1.87550 1.18862 0.91288 0.84854 0.91287 1.21029 1.01739 0.90646 1.12470 1.20826 0.91498 0.99075 0.92596 1.19532 0.94140 0.91613 1.16830 1.18212 0.87015 0.84633 0.83235 1.90590 1.15023 1.87697 1.57431 1.41827 1.09123 1.04652 1.64600 1.19685 0.93332 0.83449 1.49762 0.90296 1.26098 0.96052 1.02992 0.96069 1.69650 1.04935 1.31540 1.49657 0.84939 0.77834 0.76250 0.78990 1.19651 1.19037 1.19694 1.18788 0.83265 0.92088 0.90395 1.86510 1.14449 1.34435 1.85724 1.22931 0.93916 0.84509 0.98772 1.21847 0.93773 1.03757 1.00610 1.22346 1.03027 1.01982 0.95584 1.20436 0.93262 0.96773 1.17092 0.85576 0.91393 0.91376 0.81705 0.84676 0.76931 0.91036 0.89404 0.92920 0.87059 0.92979 0.92253 0.87803 0.92814 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.80 113.37 1.11 1.28 16 2 O -0.32 -7.10 10.48 -90.35 -0.95 -8.05 16 3 C 0.18 5.10 6.69 22.61 0.15 5.25 16 4 C -0.24 -6.69 8.96 22.10 0.20 -6.50 16 5 C -0.02 -0.74 9.48 22.28 0.21 -0.53 16 6 C -0.22 -9.64 5.89 -20.00 -0.12 -9.76 16 7 C 0.48 26.56 7.70 86.60 0.67 27.23 16 8 O -0.62 -38.73 14.73 16.74 0.25 -38.48 16 9 N -0.57 -31.84 5.23 -310.16 -1.62 -33.46 16 10 C -0.33 -20.02 9.68 84.08 0.81 -19.20 16 11 H 0.08 5.04 7.15 -2.91 -0.02 5.02 16 12 C -0.01 -0.67 5.50 84.94 0.47 -0.20 16 13 N -0.92 -50.61 13.05 21.67 0.28 -50.33 16 14 Si 1.00 44.11 29.55 68.60 2.03 46.13 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 C 0.20 8.06 6.61 22.84 0.15 8.21 16 19 O -0.30 -12.31 7.87 -68.79 -0.54 -12.86 16 20 C 0.05 1.52 2.85 30.59 0.09 1.60 16 21 C -0.14 -3.57 9.56 71.98 0.69 -2.88 16 22 C -0.17 -3.96 9.17 71.98 0.66 -3.30 16 23 C -0.26 -7.88 8.18 22.44 0.18 -7.70 16 24 H 0.13 0.97 8.14 -2.38 -0.02 0.96 16 25 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 26 H 0.07 0.80 7.65 -2.38 -0.02 0.78 16 27 H 0.17 3.31 6.26 -2.91 -0.02 3.30 16 28 H 0.14 4.78 6.39 -2.91 -0.02 4.76 16 29 H 0.40 20.84 5.91 -92.71 -0.55 20.30 16 30 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.09 2.09 6.32 -2.38 -0.02 2.08 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.06 1.40 6.91 -2.39 -0.02 1.38 16 36 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.16 4.05 5.43 -2.91 -0.02 4.03 16 Total: -1.00 -76.81 319.13 5.26 -71.55 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.54 Total: 31.99 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 5.27 Total: -6.49 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.34 Total: -83.79 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: -1.24 Total: -59.39 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -76.81 5.26 -71.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190245105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.414 kcal (2) G-P(sol) polarization free energy of solvation -76.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds