Wall clock time and date at job start Fri Apr 10 2020 17:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47488 * 2 1 4 4 C 1.35995 * 117.00081 * 179.97438 * 3 2 1 5 5 C 1.38558 * 120.07405 * 359.96402 * 4 3 2 6 6 C 1.38247 * 119.99917 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.14468 * 359.97438 * 6 5 4 8 8 C 1.38241 * 120.14765 * 0.02562 * 7 6 5 9 9 C 1.38563 * 119.99765 * 359.97368 * 8 7 6 10 10 O 1.35999 * 120.07024 * 180.02562 * 9 8 7 11 11 C 1.42897 * 116.99765 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.46980 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99832 * 0.02562 * 12 11 10 14 14 N 1.34782 * 120.00113 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99647 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46630 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00515 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99725 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99988 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99627 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47270 * 60.00408 * 20 18 16 22 22 H 1.48504 * 109.46802 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47347 * 300.00224 * 20 18 16 24 24 H 1.09003 * 109.46921 * 299.99907 * 1 2 3 25 25 H 1.09001 * 109.47024 * 59.99715 * 1 2 3 26 26 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46921 * 240.00093 * 2 1 3 28 28 H 1.09001 * 109.47024 * 120.00285 * 2 1 3 29 29 H 1.07995 * 120.00001 * 0.03822 * 5 4 3 30 30 H 1.07998 * 119.92703 * 180.27362 * 6 5 4 31 31 H 1.08004 * 119.92416 * 179.97438 * 7 6 5 32 32 H 1.07998 * 119.99988 * 180.02562 * 8 7 6 33 33 H 1.08996 * 109.47596 * 299.99815 * 11 10 9 34 34 H 1.09004 * 109.47087 * 60.00573 * 11 10 9 35 35 H 0.96998 * 119.99872 * 359.97438 * 14 12 11 36 36 H 1.09006 * 109.47205 * 299.99228 * 15 14 12 37 37 H 1.08996 * 109.47514 * 59.99842 * 15 14 12 38 38 H 0.97004 * 119.99387 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 0.0005 5 6 4.2000 0.4275 0.0018 6 6 5.5703 0.6104 0.0029 7 6 6.1004 1.8873 0.0022 8 6 5.2625 2.9868 0.0009 9 6 3.8881 2.8105 -0.0002 10 8 3.0625 3.8912 -0.0020 11 6 3.6804 5.1796 -0.0020 12 6 2.6165 6.2470 -0.0047 13 8 1.4445 5.9349 -0.0060 14 7 2.9673 7.5483 -0.0058 15 6 1.9330 8.5858 -0.0079 16 6 2.5847 9.9446 -0.0080 17 1 3.6615 10.0272 -0.0063 18 6 1.8060 11.0826 -0.0104 19 7 0.4947 10.9821 -0.0120 20 14 2.6138 12.7669 -0.0114 21 1 3.4605 12.9092 -1.2230 22 1 1.5653 13.8186 -0.0133 23 1 3.4575 12.9120 1.2020 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7885 -0.5709 0.0018 30 1 6.2282 -0.2461 -0.0006 31 1 7.1715 2.0260 0.0035 32 1 5.6791 3.9832 -0.0001 33 1 4.2996 5.2857 0.8886 34 1 4.3019 5.2845 -0.8914 35 1 3.9047 7.7979 -0.0044 36 1 1.3135 8.4794 -0.8984 37 1 1.3117 8.4813 0.8816 38 1 -0.0530 11.7827 -0.0132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243081113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:26 Heat of formation + Delta-G solvation = -114.618935 kcal Electronic energy + Delta-G solvation = -20761.681931 eV Core-core repulsion = 17375.948766 eV Total energy + Delta-G solvation = -3385.733165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.62068 -40.61105 -39.31032 -37.77764 -36.19436 -34.41960 -32.84511 -31.35077 -30.96277 -29.83753 -28.23365 -25.15343 -24.50270 -23.23882 -22.56175 -21.49243 -19.81450 -19.04921 -18.38783 -17.72110 -17.51162 -16.99580 -16.91751 -16.86763 -16.05316 -15.72310 -15.68040 -15.55072 -14.85801 -14.32066 -14.28582 -14.02408 -13.85312 -13.60645 -13.38487 -12.98259 -12.96382 -12.79508 -12.67557 -12.29477 -12.21394 -12.05469 -11.89509 -11.64948 -11.53093 -10.86661 -10.80897 -9.93359 -9.70889 -8.81260 -8.29587 -6.47033 0.32722 0.47810 1.43542 1.48325 1.56169 1.58484 1.69160 2.30472 2.37679 2.78649 2.83002 3.05395 3.69287 3.86572 3.99349 4.03984 4.04933 4.12298 4.13674 4.21905 4.32732 4.44264 4.51634 4.69262 4.86412 4.90265 5.07391 5.17349 5.19917 5.26289 5.36846 5.42090 5.55678 5.62378 5.79968 5.81409 6.10689 6.62084 6.64380 6.81347 7.21089 7.39097 8.82672 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.003106 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.844619 B = 9012.614661 C =10039.408361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.046 3.954 3 O -0.341 6.341 4 C 0.072 3.928 5 C -0.174 4.174 6 C -0.115 4.115 7 C -0.116 4.116 8 C -0.175 4.175 9 C 0.063 3.937 10 O -0.319 6.319 11 C 0.053 3.947 12 C 0.495 3.505 13 O -0.592 6.592 14 N -0.697 5.697 15 C 0.266 3.734 16 C -0.557 4.557 17 H 0.089 0.911 18 C 0.002 3.998 19 N -0.933 5.933 20 Si 0.988 3.012 21 H -0.260 1.260 22 H -0.287 1.287 23 H -0.260 1.260 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.414 0.586 36 H -0.012 1.012 37 H -0.012 1.012 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.552 -22.812 0.034 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.256 6.256 4 C 0.027 3.973 5 C -0.193 4.193 6 C -0.133 4.133 7 C -0.134 4.134 8 C -0.194 4.194 9 C 0.018 3.982 10 O -0.233 6.233 11 C -0.025 4.025 12 C 0.281 3.719 13 O -0.472 6.472 14 N -0.349 5.349 15 C 0.144 3.856 16 C -0.594 4.594 17 H 0.107 0.893 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.811 3.189 21 H -0.185 1.185 22 H -0.213 1.213 23 H -0.185 1.185 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.127 0.873 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.175 0.825 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.251 0.749 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.178 -22.778 0.031 26.315 hybrid contribution -0.049 1.056 -0.001 1.057 sum 13.128 -21.721 0.031 25.381 Atomic orbital electron populations 1.21822 0.92518 1.04118 1.02509 1.23054 0.96392 0.80842 1.02493 1.86230 1.19006 1.31251 1.89148 1.18720 0.83518 0.92025 1.03027 1.21375 0.94553 0.97322 1.06032 1.21314 0.93928 0.98575 0.99519 1.21297 1.01081 0.91378 0.99653 1.21460 0.89805 1.02471 1.05644 1.18856 0.90391 0.84965 1.03958 1.86225 1.34769 1.12814 1.89516 1.22556 0.93520 0.79928 1.06472 1.20944 0.89978 0.84450 0.76533 1.90689 1.22132 1.82889 1.51521 1.45993 1.11715 1.04491 1.72691 1.18601 0.87039 0.85742 0.94256 1.21588 0.94625 0.90087 1.53129 0.89285 1.26120 0.95248 1.04604 0.93776 1.70148 1.05899 1.31233 1.49825 0.85160 0.77803 0.76358 0.79606 1.18482 1.21263 1.18492 0.92845 0.92855 0.87305 0.90548 0.90543 0.82684 0.82305 0.82304 0.82540 0.85830 0.85839 0.74941 0.99395 0.99401 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 10.28 71.98 0.74 -2.08 16 2 C 0.05 0.92 5.46 71.98 0.39 1.31 16 3 O -0.34 -10.64 9.92 -79.63 -0.79 -11.43 16 4 C 0.07 2.03 6.70 22.57 0.15 2.18 16 5 C -0.17 -3.32 9.04 22.35 0.20 -3.12 16 6 C -0.12 -1.70 10.04 22.28 0.22 -1.48 16 7 C -0.12 -1.78 10.04 22.27 0.22 -1.55 16 8 C -0.18 -3.58 9.04 22.35 0.20 -3.38 16 9 C 0.06 1.86 6.70 22.57 0.15 2.01 16 10 O -0.32 -11.72 9.45 -67.13 -0.63 -12.36 16 11 C 0.05 1.58 5.22 71.24 0.37 1.95 16 12 C 0.49 21.24 7.91 87.66 0.69 21.94 16 13 O -0.59 -32.83 16.50 16.01 0.26 -32.57 16 14 N -0.70 -29.68 5.55 -466.78 -2.59 -32.27 16 15 C 0.27 14.86 5.43 85.63 0.46 15.32 16 16 C -0.56 -30.18 9.28 25.60 0.24 -29.95 16 17 H 0.09 4.26 7.60 -2.91 -0.02 4.24 16 18 C 0.00 0.12 5.46 84.66 0.46 0.58 16 19 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 20 Si 0.99 42.11 29.54 68.60 2.03 44.14 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.18 7.67 -2.39 -0.02 1.16 16 28 H 0.08 1.18 7.66 -2.39 -0.02 1.17 16 29 H 0.16 2.07 6.30 -2.91 -0.02 2.05 16 30 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 31 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 32 H 0.16 2.36 6.30 -2.91 -0.02 2.34 16 33 H 0.12 2.72 7.66 -2.39 -0.02 2.70 16 34 H 0.12 2.72 7.66 -2.39 -0.02 2.70 16 35 H 0.41 13.69 8.32 -92.71 -0.77 12.92 16 36 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.77 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -83.43 330.46 3.38 -80.05 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.30 Total: 17.29 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 4.52 Total: 3.73 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -2.30 Total: -88.85 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -1.16 Total: -56.35 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -83.43 3.38 -80.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243081113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.573 kcal (2) G-P(sol) polarization free energy of solvation -83.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds