Wall clock time and date at job start Fri Apr 10 2020 17:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35986 * 116.99959 * 179.97438 * 3 2 1 5 5 C 1.38699 * 119.99517 * 359.72674 * 4 3 2 6 6 C 1.38142 * 119.99254 * 179.76668 * 5 4 3 7 7 C 1.38696 * 120.00185 * 0.50815 * 6 5 4 8 8 O 1.35972 * 119.99914 * 179.72775 * 7 6 5 9 9 C 1.42905 * 117.00352 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.47412 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99693 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99908 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.47015 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99390 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00440 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99618 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00228 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47229 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47224 * 119.99562 * 18 16 14 21 21 H 1.48503 * 109.46724 * 239.99331 * 18 16 14 22 22 C 1.38698 * 120.00033 * 359.73985 * 7 6 5 23 23 C 1.38133 * 119.99925 * 0.02562 * 22 7 6 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07991 * 120.00693 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.99354 * 180.22680 * 6 5 4 31 31 H 1.09001 * 109.46474 * 300.00207 * 9 8 7 32 32 H 1.08997 * 109.46754 * 60.00269 * 9 8 7 33 33 H 0.96998 * 120.00197 * 0.02562 * 12 10 9 34 34 H 1.09001 * 109.47177 * 299.99331 * 13 12 10 35 35 H 1.08997 * 109.47531 * 60.00300 * 13 12 10 36 36 H 0.96995 * 120.00349 * 180.02562 * 17 16 14 37 37 H 1.07993 * 119.99998 * 179.97438 * 22 7 6 38 38 H 1.07998 * 120.00006 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3544 1.5256 0.0005 5 6 4.1992 0.4257 0.0068 6 6 5.5687 0.6068 0.0025 7 6 6.0988 1.8885 0.0025 8 8 7.4468 2.0667 0.0039 9 6 8.2569 0.8894 0.0046 10 6 9.7122 1.2810 0.0067 11 8 10.0248 2.4529 0.0080 12 7 10.6661 0.3290 0.0082 13 6 12.0808 0.7098 0.0108 14 6 12.9351 -0.5317 0.0115 15 1 12.4706 -1.5068 0.0105 16 6 14.3096 -0.4229 0.0144 17 7 14.8751 0.7645 0.0161 18 14 15.3684 -1.9618 0.0159 19 1 14.4957 -3.1632 0.0142 20 1 16.2282 -1.9723 -1.1949 21 1 16.2233 -1.9731 1.2301 22 6 5.2538 2.9884 0.0015 23 6 3.8844 2.8073 0.0009 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7866 -0.5723 0.0116 30 1 6.2266 -0.2497 0.0036 31 1 8.0386 0.2988 0.8944 32 1 8.0405 0.2990 -0.8856 33 1 10.4161 -0.6082 0.0076 34 1 12.2997 1.3004 -0.8787 35 1 12.2966 1.3001 0.9013 36 1 15.8420 0.8412 0.0177 37 1 5.6666 3.9863 0.0020 38 1 3.2265 3.6637 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243125560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:29 Heat of formation + Delta-G solvation = -92.959264 kcal Electronic energy + Delta-G solvation = -20252.313416 eV Core-core repulsion = 16867.519485 eV Total energy + Delta-G solvation = -3384.793931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59627 -39.46839 -38.36154 -36.42631 -34.25218 -32.42245 -32.14413 -31.29523 -29.57849 -28.27342 -26.53814 -24.39640 -22.99267 -22.07934 -21.76648 -19.87461 -18.69553 -17.88195 -17.43038 -16.41839 -16.26210 -16.12371 -15.51382 -15.19283 -14.94634 -14.39684 -14.13807 -13.96649 -13.71137 -13.52296 -13.41367 -12.87868 -12.69576 -12.39847 -12.37879 -12.02400 -11.80576 -11.78528 -11.29623 -11.01281 -10.94043 -10.86889 -10.48677 -10.35822 -9.43565 -9.24940 -9.15197 -8.79859 -7.99349 -7.85444 -6.20893 -4.28428 1.08259 1.32861 2.87064 3.00872 3.18726 3.20996 3.28213 3.31058 3.58292 4.15747 4.34115 4.49966 4.54326 4.60055 4.72215 4.85043 4.92221 5.03736 5.12679 5.15007 5.19535 5.29669 5.32104 5.39326 5.40995 5.62174 5.71618 5.88682 6.10158 6.18160 6.41389 7.11502 7.22472 7.29501 7.41219 7.45355 7.60782 7.90961 8.49900 8.70950 8.97150 9.38053 10.89306 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.039707 B = 0.002477 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.999599 B =11301.948753 C =11975.894910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.086 3.914 5 C -0.167 4.167 6 C -0.173 4.173 7 C 0.101 3.899 8 O -0.286 6.286 9 C 0.041 3.959 10 C 0.500 3.500 11 O -0.532 6.532 12 N -0.708 5.708 13 C 0.250 3.750 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.063 3.937 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.110 4.110 23 C -0.111 4.111 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.392 0.608 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.266 0.734 37 H 0.141 0.859 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.173 -3.838 -0.032 26.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.041 3.959 5 C -0.186 4.186 6 C -0.192 4.192 7 C 0.055 3.945 8 O -0.199 6.199 9 C -0.038 4.038 10 C 0.283 3.717 11 O -0.409 6.409 12 N -0.358 5.358 13 C 0.130 3.870 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.141 4.141 17 N -0.521 5.521 18 Si 0.733 3.267 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.129 4.129 23 C -0.129 4.129 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.224 0.776 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.768 -2.568 -0.030 25.896 hybrid contribution 0.639 -1.843 0.002 1.951 sum -25.129 -4.411 -0.028 25.513 Atomic orbital electron populations 1.21770 0.92832 1.02795 1.03498 1.22745 0.95794 0.82249 1.01298 1.86063 1.18942 1.28936 1.89388 1.18841 0.82292 0.94039 1.00684 1.21002 0.93420 0.98126 1.06078 1.21106 0.95662 0.96285 1.06129 1.19023 0.83183 0.93638 0.98656 1.86213 1.13296 1.31874 1.88495 1.22610 0.90524 0.87602 1.03108 1.19885 0.86196 0.86906 0.78728 1.90713 1.82860 1.18077 1.49292 1.46352 1.08507 1.08291 1.72672 1.19174 0.73174 0.96596 0.98032 1.21239 0.91379 0.92250 1.53426 0.91750 1.24965 0.97878 0.96587 0.94644 1.69984 1.10944 1.22478 1.48715 0.86334 0.80197 0.82417 0.77791 1.19637 1.20760 1.20766 1.20292 0.91118 0.98331 1.03136 1.20217 0.94019 0.95032 1.03648 0.90447 0.91541 0.91536 0.92158 0.92162 0.85348 0.84977 0.89527 0.89522 0.77561 0.95277 0.95273 0.92410 0.84144 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 2 C 0.05 0.38 5.46 37.16 0.20 0.58 16 3 O -0.32 -3.25 10.14 -19.70 -0.20 -3.45 16 4 C 0.09 0.95 6.69 -39.24 -0.26 0.68 16 5 C -0.17 -1.72 9.03 -39.45 -0.36 -2.07 16 6 C -0.17 -1.96 9.03 -39.45 -0.36 -2.31 16 7 C 0.10 1.37 6.69 -39.24 -0.26 1.10 16 8 O -0.29 -4.69 9.67 -39.56 -0.38 -5.07 16 9 C 0.04 0.59 5.22 36.01 0.19 0.78 16 10 C 0.50 10.05 7.91 -10.99 -0.09 9.96 16 11 O -0.53 -13.35 16.50 -14.35 -0.24 -13.58 16 12 N -0.71 -14.50 5.55 -61.47 -0.34 -14.84 16 13 C 0.25 6.55 5.43 -5.19 -0.03 6.53 16 14 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 16 15 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.88 -25.83 13.29 55.43 0.74 -25.09 16 18 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.11 -1.35 9.98 -39.45 -0.39 -1.74 16 23 C -0.11 -1.21 9.98 -39.45 -0.39 -1.60 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 28 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 29 H 0.13 1.01 6.29 -52.49 -0.33 0.67 16 30 H 0.13 1.23 6.29 -52.49 -0.33 0.90 16 31 H 0.09 1.01 7.66 -51.93 -0.40 0.61 16 32 H 0.09 1.01 7.66 -51.93 -0.40 0.61 16 33 H 0.39 6.59 8.32 -40.82 -0.34 6.25 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 330.71 15.07 4.98 4.98 Total: -1.00 -33.74 330.71 -7.33 -41.07 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.08 Total: 2.14 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.78 Total: -1.71 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.40 Total: -39.93 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.82 Total: -22.10 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.74 -7.33 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243125560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.887 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds