Wall clock time and date at job start Fri Apr 10 2020 17:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35986 * 116.99959 * 179.97438 * 3 2 1 5 5 C 1.38699 * 119.99517 * 359.72674 * 4 3 2 6 6 C 1.38142 * 119.99254 * 179.76668 * 5 4 3 7 7 C 1.38696 * 120.00185 * 0.50815 * 6 5 4 8 8 O 1.35972 * 119.99914 * 179.72775 * 7 6 5 9 9 C 1.42905 * 117.00352 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.47412 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99693 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99908 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.47015 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99390 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00440 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99618 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00228 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47229 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47224 * 119.99562 * 18 16 14 21 21 H 1.48503 * 109.46724 * 239.99331 * 18 16 14 22 22 C 1.38698 * 120.00033 * 359.73985 * 7 6 5 23 23 C 1.38133 * 119.99925 * 0.02562 * 22 7 6 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07991 * 120.00693 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.99354 * 180.22680 * 6 5 4 31 31 H 1.09001 * 109.46474 * 300.00207 * 9 8 7 32 32 H 1.08997 * 109.46754 * 60.00269 * 9 8 7 33 33 H 0.96998 * 120.00197 * 0.02562 * 12 10 9 34 34 H 1.09001 * 109.47177 * 299.99331 * 13 12 10 35 35 H 1.08997 * 109.47531 * 60.00300 * 13 12 10 36 36 H 0.96995 * 120.00349 * 180.02562 * 17 16 14 37 37 H 1.07993 * 119.99998 * 179.97438 * 22 7 6 38 38 H 1.07998 * 120.00006 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3544 1.5256 0.0005 5 6 4.1992 0.4257 0.0068 6 6 5.5687 0.6068 0.0025 7 6 6.0988 1.8885 0.0025 8 8 7.4468 2.0667 0.0039 9 6 8.2569 0.8894 0.0046 10 6 9.7122 1.2810 0.0067 11 8 10.0248 2.4529 0.0080 12 7 10.6661 0.3290 0.0082 13 6 12.0808 0.7098 0.0108 14 6 12.9351 -0.5317 0.0115 15 1 12.4706 -1.5068 0.0105 16 6 14.3096 -0.4229 0.0144 17 7 14.8751 0.7645 0.0161 18 14 15.3684 -1.9618 0.0159 19 1 14.4957 -3.1632 0.0142 20 1 16.2282 -1.9723 -1.1949 21 1 16.2233 -1.9731 1.2301 22 6 5.2538 2.9884 0.0015 23 6 3.8844 2.8073 0.0009 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7866 -0.5723 0.0116 30 1 6.2266 -0.2497 0.0036 31 1 8.0386 0.2988 0.8944 32 1 8.0405 0.2990 -0.8856 33 1 10.4161 -0.6082 0.0076 34 1 12.2997 1.3004 -0.8787 35 1 12.2966 1.3001 0.9013 36 1 15.8420 0.8412 0.0177 37 1 5.6666 3.9863 0.0020 38 1 3.2265 3.6637 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243125560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:28 Heat of formation + Delta-G solvation = -116.077096 kcal Electronic energy + Delta-G solvation = -20253.315880 eV Core-core repulsion = 16867.519485 eV Total energy + Delta-G solvation = -3385.796395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.53372 -40.67483 -39.65803 -37.36171 -36.18095 -34.41465 -32.70055 -32.13663 -30.83692 -29.52475 -28.14748 -25.09559 -24.68427 -23.20311 -22.53392 -21.54129 -19.56997 -19.08769 -18.79196 -17.75828 -17.39302 -16.99578 -16.95913 -16.85191 -16.03180 -15.76703 -15.70371 -14.96647 -14.60528 -14.46312 -14.28806 -14.18686 -13.94477 -13.93649 -13.32626 -13.15240 -13.03963 -12.91236 -12.75299 -12.48808 -12.21847 -12.06693 -11.65444 -11.46745 -11.28515 -10.85662 -10.83381 -10.08207 -9.92310 -8.74106 -8.29789 -6.46684 0.25549 0.44794 1.43984 1.45385 1.58367 1.59481 1.69920 2.30719 2.37854 2.72674 2.86443 3.05537 3.65832 3.83330 3.86118 4.03798 4.10478 4.13773 4.18661 4.20009 4.40728 4.44980 4.48980 4.77696 4.94838 4.98172 5.06143 5.09418 5.21068 5.21123 5.29851 5.34737 5.42963 5.56944 5.64468 5.82005 6.29620 6.52608 6.63486 6.81454 7.21524 7.39494 8.82716 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.039707 B = 0.002477 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.999599 B =11301.948753 C =11975.894910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.332 6.332 4 C 0.083 3.917 5 C -0.166 4.166 6 C -0.169 4.169 7 C 0.073 3.927 8 O -0.322 6.322 9 C 0.054 3.946 10 C 0.495 3.505 11 O -0.592 6.592 12 N -0.698 5.698 13 C 0.265 3.735 14 C -0.554 4.554 15 H 0.089 0.911 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.987 3.013 19 H -0.250 1.250 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.123 4.123 23 C -0.117 4.117 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.414 0.586 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.269 0.731 37 H 0.137 0.863 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.048 -7.310 -0.033 28.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.038 3.962 5 C -0.184 4.184 6 C -0.187 4.187 7 C 0.028 3.972 8 O -0.236 6.236 9 C -0.024 4.024 10 C 0.282 3.718 11 O -0.473 6.473 12 N -0.350 5.350 13 C 0.143 3.857 14 C -0.592 4.592 15 H 0.107 0.893 16 C -0.198 4.198 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.173 1.173 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.142 4.142 23 C -0.136 4.136 24 H 0.117 0.883 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.174 0.826 30 H 0.174 0.826 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.250 0.750 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.078 0.922 37 H 0.155 0.845 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -27.710 -6.091 -0.031 28.371 hybrid contribution 1.068 -0.711 0.002 1.283 sum -26.642 -6.802 -0.029 27.496 Atomic orbital electron populations 1.21803 0.91687 1.04092 1.03113 1.23057 0.96792 0.80917 1.02298 1.86065 1.18381 1.31121 1.89150 1.19033 0.82988 0.94260 0.99921 1.21307 0.92939 0.99232 1.04946 1.21358 0.96475 0.95915 1.04978 1.19233 0.81956 0.95078 1.00898 1.86144 1.14927 1.33026 1.89462 1.22546 0.85829 0.87481 1.06555 1.20935 0.88649 0.85746 0.76501 1.90685 1.84265 1.20682 1.51618 1.46005 1.06538 1.09778 1.72640 1.18614 0.76703 0.96066 0.94360 1.21648 0.91779 0.92967 1.52805 0.89315 1.26105 0.99656 1.00187 0.93891 1.70150 1.11454 1.25455 1.49975 0.85073 0.78026 0.78304 0.77565 1.17342 1.20598 1.20608 1.20416 0.91767 0.98333 1.03665 1.20378 0.93629 0.96026 1.03521 0.88299 0.91937 0.91932 0.91092 0.91089 0.82568 0.82571 0.85824 0.85815 0.74962 0.99277 0.99271 0.92247 0.84488 0.83238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 71.98 0.74 -0.45 16 2 C 0.04 0.49 5.46 71.98 0.39 0.88 16 3 O -0.33 -6.10 10.14 -93.39 -0.95 -7.05 16 4 C 0.08 1.66 6.69 22.49 0.15 1.81 16 5 C -0.17 -2.89 9.03 22.36 0.20 -2.69 16 6 C -0.17 -3.32 9.03 22.36 0.20 -3.12 16 7 C 0.07 1.90 6.69 22.49 0.15 2.05 16 8 O -0.32 -10.38 9.67 -74.20 -0.72 -11.09 16 9 C 0.05 1.44 5.22 71.24 0.37 1.82 16 10 C 0.50 20.01 7.91 87.66 0.69 20.71 16 11 O -0.59 -31.06 16.50 16.00 0.26 -30.79 16 12 N -0.70 -28.48 5.55 -466.78 -2.59 -31.07 16 13 C 0.27 14.40 5.43 85.63 0.46 14.87 16 14 C -0.55 -29.48 9.28 25.60 0.24 -29.24 16 15 H 0.09 4.18 7.60 -2.91 -0.02 4.16 16 16 C 0.00 0.06 5.46 84.65 0.46 0.52 16 17 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 18 Si 0.99 41.60 29.54 68.60 2.03 43.63 16 19 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 22 C -0.12 -3.01 9.98 22.35 0.22 -2.79 16 23 C -0.12 -2.47 9.98 22.35 0.22 -2.25 16 24 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 0.64 7.67 -2.39 -0.02 0.62 16 28 H 0.07 0.64 7.65 -2.39 -0.02 0.62 16 29 H 0.16 1.78 6.29 -2.92 -0.02 1.76 16 30 H 0.16 2.20 6.29 -2.91 -0.02 2.18 16 31 H 0.12 2.42 7.66 -2.39 -0.02 2.41 16 32 H 0.12 2.42 7.66 -2.39 -0.02 2.41 16 33 H 0.41 13.06 8.32 -92.71 -0.77 12.29 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -77.32 330.71 3.14 -74.18 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.30 Total: 15.76 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 4.51 Total: 2.13 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -2.30 Total: -86.76 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -1.40 Total: -48.94 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -77.32 3.14 -74.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243125560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.893 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds