Wall clock time and date at job start Fri Apr 10 2020 17:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47346 * 2 1 4 4 C 1.35985 * 116.99621 * 180.02562 * 3 2 1 5 5 C 1.38692 * 120.00442 * 359.72606 * 4 3 2 6 6 C 1.38136 * 119.99950 * 179.76490 * 5 4 3 7 7 C 1.38693 * 120.00099 * 0.51295 * 6 5 4 8 8 O 1.35980 * 120.00476 * 179.72061 * 7 6 5 9 9 C 1.42907 * 116.99619 * 0.02562 * 8 7 6 10 10 C 1.50696 * 109.47106 * 179.97438 * 9 8 7 11 11 O 1.21299 * 119.99761 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00000 * 179.97438 * 10 9 8 13 13 C 1.46492 * 119.99873 * 0.02562 * 12 10 9 14 14 C 1.37104 * 119.99754 * 180.02562 * 12 10 9 15 15 H 1.07995 * 120.00160 * 22.41220 * 14 12 10 16 16 C 1.38947 * 119.99358 * 202.41011 * 14 12 10 17 17 N 1.31413 * 120.00712 * 11.59866 * 16 14 12 18 18 Si 1.86806 * 119.99379 * 191.59364 * 16 14 12 19 19 H 1.48500 * 109.47316 * 60.00415 * 18 16 14 20 20 H 1.48506 * 109.46960 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47258 * 299.99902 * 18 16 14 22 22 C 1.38699 * 119.99791 * 359.74056 * 7 6 5 23 23 C 1.38127 * 120.00155 * 0.02562 * 22 7 6 24 24 H 1.09001 * 109.47294 * 59.99111 * 1 2 3 25 25 H 1.08994 * 109.47394 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46991 * 299.99888 * 1 2 3 27 27 H 1.09003 * 109.46991 * 240.00112 * 2 1 3 28 28 H 1.08997 * 109.47500 * 120.00406 * 2 1 3 29 29 H 1.08002 * 119.99961 * 0.02562 * 5 4 3 30 30 H 1.08001 * 120.00042 * 180.23188 * 6 5 4 31 31 H 1.09003 * 109.46924 * 299.99636 * 9 8 7 32 32 H 1.09001 * 109.47423 * 59.99545 * 9 8 7 33 33 H 1.09009 * 109.47456 * 92.15514 * 13 12 10 34 34 H 1.08996 * 109.46932 * 212.15231 * 13 12 10 35 35 H 1.09000 * 109.47539 * 332.15441 * 13 12 10 36 36 H 0.96994 * 120.00283 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.00227 * 179.97438 * 22 7 6 38 38 H 1.07998 * 120.00367 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5253 -0.0005 5 6 4.1993 0.4254 0.0047 6 6 5.5687 0.6064 -0.0008 7 6 6.0989 1.8879 -0.0007 8 8 7.4470 2.0661 -0.0004 9 6 8.2570 0.8888 -0.0006 10 6 9.7122 1.2802 -0.0008 11 8 10.0250 2.4522 -0.0012 12 7 10.6662 0.3281 -0.0005 13 6 10.2883 -1.0873 -0.0006 14 6 11.9901 0.6843 -0.0001 15 1 12.2869 1.6595 0.3565 16 6 12.9500 -0.2096 -0.4586 17 7 12.5830 -1.2965 -1.0997 18 14 14.7624 0.1339 -0.1638 19 1 15.0192 0.2182 1.2964 20 1 15.5754 -0.9634 -0.7472 21 1 15.1335 1.4199 -0.8068 22 6 5.2541 2.9879 -0.0006 23 6 3.8847 2.8070 -0.0001 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.7865 -0.5726 0.0088 30 1 6.2266 -0.2502 -0.0005 31 1 8.0394 0.2979 0.8892 32 1 8.0398 0.2985 -0.8908 33 1 10.2322 -1.4484 -1.0276 34 1 11.0351 -1.6626 0.5465 35 1 9.3166 -1.2040 0.4791 36 1 13.2531 -1.9206 -1.4194 37 1 5.6668 3.9859 -0.0002 38 1 3.2268 3.6635 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263659138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:32 Heat of formation + Delta-G solvation = -72.820068 kcal Electronic energy + Delta-G solvation = -20930.377103 eV Core-core repulsion = 17546.456473 eV Total energy + Delta-G solvation = -3383.920630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38381 -39.18995 -38.07388 -36.22894 -34.65707 -32.01964 -31.75695 -31.08253 -29.13733 -27.70019 -26.12649 -24.39255 -24.11303 -22.22120 -21.59740 -19.20464 -18.51694 -17.64748 -16.92739 -16.27653 -16.25401 -15.81827 -15.60111 -14.81076 -14.65962 -14.16941 -13.84854 -13.79998 -13.51586 -13.36879 -13.32012 -12.70535 -12.42080 -12.24481 -12.07055 -11.73022 -11.58747 -11.44365 -11.28172 -11.07829 -10.91758 -10.66299 -10.43906 -10.35804 -10.19659 -9.08306 -9.06739 -8.44999 -7.77003 -7.64441 -6.37218 -3.94371 1.26403 1.52419 3.07647 3.16342 3.21684 3.23435 3.38837 3.74434 3.79245 4.14582 4.63183 4.64766 4.77568 4.81523 4.95166 4.96925 5.05452 5.14261 5.23829 5.36068 5.48671 5.48892 5.56829 5.59657 5.71028 5.72748 5.89336 6.07010 6.18588 6.28153 6.40023 6.60461 6.77385 7.12370 7.30527 7.51632 7.64080 8.05797 8.41837 9.11491 9.31979 9.87295 10.66576 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.043321 B = 0.002992 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.176476 B = 9356.049686 C = 9928.243100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.081 3.919 5 C -0.166 4.166 6 C -0.175 4.175 7 C 0.106 3.894 8 O -0.286 6.286 9 C 0.053 3.947 10 C 0.446 3.554 11 O -0.568 6.568 12 N -0.442 5.442 13 C 0.109 3.891 14 C -0.305 4.305 15 H 0.100 0.900 16 C 0.031 3.969 17 N -0.884 5.884 18 Si 0.931 3.069 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.114 4.114 23 C -0.111 4.111 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.024 0.976 36 H 0.269 0.731 37 H 0.139 0.861 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.525 -2.573 2.052 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.037 3.963 5 C -0.185 4.185 6 C -0.193 4.193 7 C 0.059 3.941 8 O -0.198 6.198 9 C -0.026 4.026 10 C 0.233 3.767 11 O -0.451 6.451 12 N -0.163 5.163 13 C -0.035 4.035 14 C -0.433 4.433 15 H 0.118 0.882 16 C -0.173 4.173 17 N -0.523 5.523 18 Si 0.757 3.243 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.133 4.133 23 C -0.129 4.129 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.157 0.843 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.288 -1.861 1.963 19.477 hybrid contribution 0.939 -0.782 0.005 1.222 sum -18.349 -2.643 1.968 18.642 Atomic orbital electron populations 1.21764 0.92941 1.02713 1.03429 1.22723 0.95677 0.82399 1.01285 1.86047 1.19050 1.28783 1.89557 1.18808 0.82166 0.94053 1.01322 1.20987 0.93437 0.98013 1.06076 1.21134 0.95579 0.96501 1.06121 1.19096 0.83719 0.93510 0.97746 1.86222 1.12847 1.32734 1.87986 1.22586 0.91478 0.86650 1.01879 1.19499 0.85339 0.86746 0.85111 1.90562 1.82224 1.17861 1.54474 1.43485 1.05344 1.04454 1.63010 1.21582 0.96767 0.83162 1.01982 1.19634 0.80086 1.02936 1.40647 0.88190 1.25367 1.00691 0.96015 0.95182 1.69978 1.34725 1.12160 1.35434 0.85926 0.81433 0.78121 0.78808 1.19830 1.20902 1.19681 1.20280 0.91114 0.98306 1.03574 1.20184 0.94001 0.94920 1.03834 0.91580 0.90512 0.91597 0.92200 0.92219 0.85477 0.84994 0.90718 0.90421 0.92069 0.90819 0.95756 0.92083 0.84273 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.15 0.38 -0.56 16 2 C 0.05 0.45 5.46 37.15 0.20 0.65 16 3 O -0.32 -3.71 10.14 -19.69 -0.20 -3.91 16 4 C 0.08 1.03 6.69 -39.24 -0.26 0.77 16 5 C -0.17 -2.05 9.03 -39.45 -0.36 -2.40 16 6 C -0.17 -2.44 9.03 -39.45 -0.36 -2.80 16 7 C 0.11 1.72 6.69 -39.24 -0.26 1.46 16 8 O -0.29 -5.69 9.67 -39.59 -0.38 -6.07 16 9 C 0.05 1.02 3.74 36.00 0.13 1.15 16 10 C 0.45 11.21 7.70 -10.99 -0.08 11.12 16 11 O -0.57 -16.57 16.19 -14.37 -0.23 -16.80 16 12 N -0.44 -11.34 3.02 -122.20 -0.37 -11.71 16 13 C 0.11 2.35 8.52 59.84 0.51 2.86 16 14 C -0.31 -8.51 9.29 -14.93 -0.14 -8.65 16 15 H 0.10 2.91 7.41 -52.49 -0.39 2.53 16 16 C 0.03 0.80 5.11 -17.47 -0.09 0.71 16 17 N -0.88 -23.17 10.62 55.50 0.59 -22.58 16 18 Si 0.93 20.60 29.57 -169.99 -5.03 15.58 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C -0.11 -1.64 9.98 -39.45 -0.39 -2.03 16 23 C -0.11 -1.41 9.98 -39.45 -0.39 -1.80 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 28 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 29 H 0.13 1.24 6.29 -52.49 -0.33 0.91 16 30 H 0.13 1.66 6.29 -52.49 -0.33 1.33 16 31 H 0.07 1.24 6.92 -51.93 -0.36 0.88 16 32 H 0.08 1.34 7.63 -51.93 -0.40 0.94 16 33 H 0.06 1.36 7.54 -51.92 -0.39 0.97 16 34 H 0.07 1.67 7.06 -51.93 -0.37 1.30 16 35 H 0.02 0.42 6.36 -51.93 -0.33 0.09 16 36 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 321.70 15.07 4.85 4.85 Total: -1.00 -32.56 321.70 -6.82 -39.38 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.94 Total: 0.78 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.11 Total: 0.48 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.22 Total: -34.28 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.82 Total: -26.79 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.56 -6.82 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263659138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.438 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds