Wall clock time and date at job start Fri Apr 10 2020 17:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47346 * 2 1 4 4 C 1.35985 * 116.99621 * 180.02562 * 3 2 1 5 5 C 1.38692 * 120.00442 * 359.72606 * 4 3 2 6 6 C 1.38136 * 119.99950 * 179.76490 * 5 4 3 7 7 C 1.38693 * 120.00099 * 0.51295 * 6 5 4 8 8 O 1.35980 * 120.00476 * 179.72061 * 7 6 5 9 9 C 1.42907 * 116.99619 * 0.02562 * 8 7 6 10 10 C 1.50696 * 109.47106 * 179.97438 * 9 8 7 11 11 O 1.21299 * 119.99761 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00000 * 179.97438 * 10 9 8 13 13 C 1.46492 * 119.99873 * 0.02562 * 12 10 9 14 14 C 1.37104 * 119.99754 * 180.02562 * 12 10 9 15 15 H 1.07995 * 120.00160 * 22.41220 * 14 12 10 16 16 C 1.38947 * 119.99358 * 202.41011 * 14 12 10 17 17 N 1.31413 * 120.00712 * 11.59866 * 16 14 12 18 18 Si 1.86806 * 119.99379 * 191.59364 * 16 14 12 19 19 H 1.48500 * 109.47316 * 60.00415 * 18 16 14 20 20 H 1.48506 * 109.46960 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47258 * 299.99902 * 18 16 14 22 22 C 1.38699 * 119.99791 * 359.74056 * 7 6 5 23 23 C 1.38127 * 120.00155 * 0.02562 * 22 7 6 24 24 H 1.09001 * 109.47294 * 59.99111 * 1 2 3 25 25 H 1.08994 * 109.47394 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46991 * 299.99888 * 1 2 3 27 27 H 1.09003 * 109.46991 * 240.00112 * 2 1 3 28 28 H 1.08997 * 109.47500 * 120.00406 * 2 1 3 29 29 H 1.08002 * 119.99961 * 0.02562 * 5 4 3 30 30 H 1.08001 * 120.00042 * 180.23188 * 6 5 4 31 31 H 1.09003 * 109.46924 * 299.99636 * 9 8 7 32 32 H 1.09001 * 109.47423 * 59.99545 * 9 8 7 33 33 H 1.09009 * 109.47456 * 92.15514 * 13 12 10 34 34 H 1.08996 * 109.46932 * 212.15231 * 13 12 10 35 35 H 1.09000 * 109.47539 * 332.15441 * 13 12 10 36 36 H 0.96994 * 120.00283 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.00227 * 179.97438 * 22 7 6 38 38 H 1.07998 * 120.00367 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5253 -0.0005 5 6 4.1993 0.4254 0.0047 6 6 5.5687 0.6064 -0.0008 7 6 6.0989 1.8879 -0.0007 8 8 7.4470 2.0661 -0.0004 9 6 8.2570 0.8888 -0.0006 10 6 9.7122 1.2802 -0.0008 11 8 10.0250 2.4522 -0.0012 12 7 10.6662 0.3281 -0.0005 13 6 10.2883 -1.0873 -0.0006 14 6 11.9901 0.6843 -0.0001 15 1 12.2869 1.6595 0.3565 16 6 12.9500 -0.2096 -0.4586 17 7 12.5830 -1.2965 -1.0997 18 14 14.7624 0.1339 -0.1638 19 1 15.0192 0.2182 1.2964 20 1 15.5754 -0.9634 -0.7472 21 1 15.1335 1.4199 -0.8068 22 6 5.2541 2.9879 -0.0006 23 6 3.8847 2.8070 -0.0001 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.7865 -0.5726 0.0088 30 1 6.2266 -0.2502 -0.0005 31 1 8.0394 0.2979 0.8892 32 1 8.0398 0.2985 -0.8908 33 1 10.2322 -1.4484 -1.0276 34 1 11.0351 -1.6626 0.5465 35 1 9.3166 -1.2040 0.4791 36 1 13.2531 -1.9206 -1.4194 37 1 5.6668 3.9859 -0.0002 38 1 3.2268 3.6635 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263659138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:32 Heat of formation + Delta-G solvation = -92.703772 kcal Electronic energy + Delta-G solvation = -20931.239325 eV Core-core repulsion = 17546.456473 eV Total energy + Delta-G solvation = -3384.782852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.49272 -40.58275 -39.60369 -37.38794 -36.63509 -33.76386 -32.69181 -32.10065 -30.42876 -29.09407 -27.89715 -26.15351 -24.99627 -23.32355 -22.51466 -20.96322 -19.57051 -18.97610 -18.75182 -17.72512 -17.36082 -17.16243 -16.94301 -16.39398 -15.96218 -15.74976 -15.51950 -14.94768 -14.54590 -14.46683 -14.23216 -13.94375 -13.74537 -13.41152 -13.25026 -13.12487 -13.10492 -12.99943 -12.67941 -12.48870 -12.37859 -12.13955 -12.02751 -11.63476 -11.26834 -11.05770 -10.43463 -10.07897 -9.77276 -8.72584 -8.37437 -6.03967 0.25739 0.45797 1.37668 1.40759 1.50872 1.86754 1.92865 2.29897 2.36586 2.73217 3.04089 3.16675 3.70427 3.82879 3.89781 4.01256 4.10976 4.17978 4.20245 4.21200 4.41250 4.45073 4.49879 4.57984 4.78684 4.94946 4.98876 5.00707 5.08034 5.21253 5.32018 5.35455 5.35717 5.41284 5.58459 6.00201 6.30229 6.44560 6.56087 7.10300 7.35358 7.91308 8.63956 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.043321 B = 0.002992 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.176476 B = 9356.049686 C = 9928.243100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.330 6.330 4 C 0.083 3.917 5 C -0.164 4.164 6 C -0.173 4.173 7 C 0.071 3.929 8 O -0.320 6.320 9 C 0.068 3.932 10 C 0.431 3.569 11 O -0.624 6.624 12 N -0.454 5.454 13 C 0.114 3.886 14 C -0.348 4.348 15 H 0.071 0.929 16 C 0.001 3.999 17 N -0.892 5.892 18 Si 0.992 3.008 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.278 1.278 22 C -0.123 4.123 23 C -0.114 4.114 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.157 0.843 30 H 0.148 0.852 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.276 0.724 37 H 0.138 0.862 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.138 -4.610 2.180 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.038 3.962 5 C -0.182 4.182 6 C -0.191 4.191 7 C 0.026 3.974 8 O -0.234 6.234 9 C -0.010 4.010 10 C 0.220 3.780 11 O -0.511 6.511 12 N -0.174 5.174 13 C -0.028 4.028 14 C -0.475 4.475 15 H 0.089 0.911 16 C -0.202 4.202 17 N -0.530 5.530 18 Si 0.815 3.185 19 H -0.191 1.191 20 H -0.191 1.191 21 H -0.204 1.204 22 C -0.142 4.142 23 C -0.132 4.132 24 H 0.081 0.919 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.174 0.826 30 H 0.165 0.835 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.156 0.844 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.939 -3.953 2.089 21.411 hybrid contribution 1.281 -0.175 -0.060 1.295 sum -19.658 -4.129 2.029 20.189 Atomic orbital electron populations 1.21796 0.91512 1.04105 1.03167 1.23062 0.96896 0.80959 1.02252 1.86059 1.18185 1.31074 1.89184 1.18987 0.82974 0.94156 1.00052 1.21276 0.92672 0.99348 1.04949 1.21317 0.96575 0.95880 1.05375 1.19365 0.82245 0.95211 1.00584 1.86153 1.14830 1.33251 1.89169 1.22366 0.87448 0.86850 1.04308 1.20521 0.87833 0.85951 0.83725 1.90510 1.83709 1.20168 1.56753 1.43761 1.04970 1.06164 1.62483 1.21607 0.98736 0.80653 1.01811 1.19589 0.82107 1.02735 1.43104 0.91092 1.26105 1.04314 0.95516 0.94220 1.70039 1.36159 1.12231 1.34610 0.85019 0.76501 0.77977 0.78974 1.19111 1.19120 1.20356 1.20419 0.91809 0.98148 1.03806 1.20383 0.93455 0.96056 1.03325 0.91882 0.88291 0.91845 0.91227 0.91146 0.82576 0.83460 0.87582 0.88122 0.92859 0.92230 0.90910 0.91405 0.84385 0.82856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 71.98 0.74 -0.69 16 2 C 0.04 0.58 5.46 71.98 0.39 0.97 16 3 O -0.33 -6.84 10.14 -93.38 -0.95 -7.79 16 4 C 0.08 1.93 6.69 22.49 0.15 2.08 16 5 C -0.16 -3.56 9.03 22.35 0.20 -3.35 16 6 C -0.17 -4.44 9.03 22.35 0.20 -4.24 16 7 C 0.07 2.27 6.69 22.49 0.15 2.42 16 8 O -0.32 -12.87 9.67 -74.29 -0.72 -13.59 16 9 C 0.07 2.57 3.74 71.23 0.27 2.83 16 10 C 0.43 22.09 7.70 87.66 0.68 22.77 16 11 O -0.62 -38.18 16.19 15.95 0.26 -37.92 16 12 N -0.45 -23.60 3.02 -658.90 -1.99 -25.59 16 13 C 0.11 4.82 8.52 127.77 1.09 5.91 16 14 C -0.35 -19.95 9.29 84.04 0.78 -19.17 16 15 H 0.07 4.38 7.41 -2.91 -0.02 4.36 16 16 C 0.00 0.05 5.11 84.93 0.43 0.48 16 17 N -0.89 -46.28 10.62 21.66 0.23 -46.05 16 18 Si 0.99 42.20 29.57 68.60 2.03 44.23 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 C -0.12 -3.52 9.98 22.35 0.22 -3.30 16 23 C -0.11 -2.75 9.98 22.35 0.22 -2.52 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.81 7.67 -2.39 -0.02 0.79 16 28 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16 29 H 0.16 2.40 6.29 -2.91 -0.02 2.38 16 30 H 0.15 3.22 6.29 -2.91 -0.02 3.20 16 31 H 0.11 3.25 6.92 -2.39 -0.02 3.23 16 32 H 0.10 3.27 7.63 -2.39 -0.02 3.25 16 33 H 0.05 2.31 7.54 -2.38 -0.02 2.29 16 34 H 0.06 2.65 7.06 -2.39 -0.02 2.63 16 35 H 0.07 2.31 6.36 -2.39 -0.02 2.29 16 36 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 37 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -73.12 321.70 5.46 -67.67 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.07 Total: 14.85 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.53 Total: 4.18 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -1.76 Total: -71.64 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -1.41 Total: -59.30 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -73.12 5.46 -67.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263659138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.038 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds