Wall clock time and date at job start Fri Apr 10 2020 17:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46379 * 2 1 4 4 C 1.46504 * 119.99922 * 85.32007 * 3 2 1 5 5 C 1.50701 * 109.46847 * 82.64953 * 4 3 2 6 6 H 1.07991 * 120.00760 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99462 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00511 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99989 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46956 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47277 * 120.00116 * 9 7 5 12 12 H 1.48500 * 109.47342 * 239.99951 * 9 7 5 13 13 C 1.34780 * 120.00273 * 265.31532 * 3 2 1 14 14 O 1.21584 * 119.99474 * 4.33616 * 13 3 2 15 15 C 1.47609 * 120.00119 * 184.34418 * 13 3 2 16 16 C 1.39699 * 120.07393 * 48.36529 * 15 13 3 17 17 C 1.37781 * 120.00829 * 180.02562 * 16 15 13 18 18 C 1.38840 * 120.14526 * 359.97438 * 17 16 15 19 19 O 1.35804 * 119.92751 * 180.02562 * 18 17 16 20 20 C 1.39401 * 120.14359 * 0.02562 * 18 17 16 21 21 O 1.36004 * 120.00271 * 180.02562 * 20 18 17 22 22 C 1.42898 * 117.00016 * 179.97438 * 21 20 18 23 23 C 1.38140 * 119.99266 * 359.72075 * 20 18 17 24 24 H 1.08997 * 109.46821 * 299.99225 * 1 2 3 25 25 H 1.08991 * 109.47173 * 59.99974 * 1 2 3 26 26 H 1.09008 * 109.46569 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46821 * 240.00775 * 2 1 3 28 28 H 1.08994 * 109.47568 * 120.00353 * 2 1 3 29 29 H 1.08995 * 109.47231 * 202.65132 * 4 3 2 30 30 H 1.08998 * 109.46980 * 322.65020 * 4 3 2 31 31 H 0.97000 * 120.00600 * 179.97438 * 8 7 5 32 32 H 1.08001 * 119.99748 * 0.02562 * 16 15 13 33 33 H 1.07998 * 119.92863 * 179.97438 * 17 16 15 34 34 H 0.96698 * 114.00294 * 89.99913 * 19 18 17 35 35 H 1.08996 * 109.47165 * 179.97438 * 22 21 20 36 36 H 1.09003 * 109.46893 * 300.00421 * 22 21 20 37 37 H 1.09001 * 109.46805 * 59.99979 * 22 21 20 38 38 H 1.08004 * 120.07079 * 180.30019 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1647 2.1064 1.2645 5 6 3.4797 1.7411 1.9036 6 1 4.1404 1.0394 1.4165 7 6 3.8392 2.3028 3.1104 8 7 3.0344 3.1570 3.7040 9 14 5.4694 1.8506 3.9023 10 1 6.1856 0.8769 3.0396 11 1 6.2980 3.0726 4.0622 12 1 5.2211 1.2433 5.2345 13 6 2.3327 1.9850 -1.1633 14 8 2.1371 1.4120 -2.2177 15 6 2.9146 3.3415 -1.1572 16 6 3.9865 3.6396 -0.3124 17 6 4.5283 4.9064 -0.3074 18 6 4.0116 5.8890 -1.1412 19 8 4.5494 7.1360 -1.1330 20 6 2.9421 5.5983 -1.9866 21 8 2.4385 6.5629 -2.8026 22 6 1.3428 6.1949 -3.6428 23 6 2.3978 4.3288 -2.0002 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.1393 3.1792 1.0733 30 1 1.3480 1.8374 1.9343 31 1 3.2871 3.5519 4.5531 32 1 4.3906 2.8770 0.3369 33 1 5.3567 5.1356 0.3465 34 1 5.2715 7.2571 -1.7646 35 1 1.0384 7.0542 -4.2402 36 1 1.6479 5.3828 -4.3028 37 1 0.5062 5.8669 -3.0260 38 1 1.5723 4.1008 -2.6582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268091302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:36 Heat of formation + Delta-G solvation = -108.436480 kcal Electronic energy + Delta-G solvation = -22322.069803 eV Core-core repulsion = 18936.604730 eV Total energy + Delta-G solvation = -3385.465073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.69087 -40.55030 -38.75162 -37.29058 -37.02311 -34.71317 -32.40419 -31.44249 -30.51011 -29.03105 -28.18897 -25.17107 -25.01923 -23.31995 -23.22245 -20.62932 -19.56415 -18.91252 -18.41131 -17.71664 -17.30513 -17.01345 -16.90207 -16.30016 -16.10226 -15.80871 -15.22251 -14.98115 -14.89832 -14.47041 -14.30357 -13.85537 -13.47402 -13.33457 -13.19051 -13.08725 -12.90953 -12.67957 -12.62693 -12.47921 -12.11308 -11.99215 -11.80241 -11.67597 -11.52698 -10.91735 -10.57632 -9.90277 -9.52744 -9.10478 -8.18334 -6.31456 -0.14477 0.37961 1.42909 1.47446 1.56680 1.68538 2.15730 2.31222 2.43906 2.68014 3.10736 3.19052 3.58674 3.85643 4.11681 4.21114 4.32865 4.35280 4.38113 4.41497 4.53987 4.58544 4.69322 4.76424 4.80550 4.91868 4.99407 5.08010 5.17920 5.31912 5.35366 5.43894 5.63474 5.70169 5.80989 6.05098 6.22840 6.50261 6.79178 6.86491 7.18674 7.38748 8.87777 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.007390 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.972245 B = 3788.129274 C = 5361.822465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 N -0.589 5.589 4 C 0.249 3.751 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.030 3.970 8 N -0.914 5.914 9 Si 0.950 3.050 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.282 1.282 13 C 0.554 3.446 14 O -0.589 6.589 15 C -0.114 4.114 16 C -0.091 4.091 17 C -0.118 4.118 18 C 0.094 3.906 19 O -0.492 6.492 20 C 0.083 3.917 21 O -0.319 6.319 22 C 0.016 3.984 23 C -0.151 4.151 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.028 0.972 30 H 0.018 0.982 31 H 0.267 0.733 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.407 0.593 35 H 0.129 0.871 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 3.405 -9.618 10.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 N -0.318 5.318 4 C 0.129 3.871 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.172 4.172 8 N -0.553 5.553 9 Si 0.776 3.224 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.208 1.208 13 C 0.344 3.656 14 O -0.472 6.472 15 C -0.117 4.117 16 C -0.110 4.110 17 C -0.137 4.137 18 C 0.048 3.952 19 O -0.305 6.305 20 C 0.037 3.963 21 O -0.233 6.233 22 C -0.078 4.078 23 C -0.171 4.171 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.266 0.734 35 H 0.148 0.852 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.676 3.509 -9.555 10.202 hybrid contribution 0.786 -0.427 0.420 0.988 sum 0.110 3.082 -9.135 9.641 Atomic orbital electron populations 1.22012 0.94751 1.03166 1.01174 1.21481 0.95283 0.81983 1.02736 1.48240 1.61817 1.14515 1.07195 1.19201 0.96433 0.91997 0.79508 1.21528 1.03920 1.26663 1.05599 0.92127 1.25584 1.00070 0.94461 0.97079 1.70028 1.38078 1.29561 1.17590 0.85616 0.79989 0.78382 0.78434 1.19013 1.20238 1.20760 1.18484 0.77539 0.86141 0.83478 1.90653 1.57511 1.67305 1.31748 1.19710 0.98938 0.93776 0.99228 1.21893 0.95121 0.98319 0.95646 1.21329 1.01519 0.91488 0.99342 1.17961 0.94507 0.85733 0.96967 1.84763 1.55035 1.26097 1.64558 1.19181 0.96015 0.87892 0.93191 1.86098 1.49682 1.35537 1.51943 1.23371 0.87083 1.04042 0.93347 1.21123 1.02771 0.91679 1.01522 0.93129 0.93727 0.89122 0.90812 0.89987 0.95383 0.96352 0.92337 0.83187 0.83195 0.73426 0.85250 0.91992 0.92661 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 10.24 71.98 0.74 -4.01 16 2 C 0.11 3.92 6.16 86.38 0.53 4.45 16 3 N -0.59 -25.22 2.46 -829.82 -2.04 -27.26 16 4 C 0.25 11.89 4.68 85.63 0.40 12.29 16 5 C -0.54 -26.62 6.55 25.60 0.17 -26.46 16 6 H 0.06 3.01 7.76 -2.92 -0.02 2.98 16 7 C 0.03 1.48 5.46 84.65 0.46 1.95 16 8 N -0.91 -49.18 13.29 21.45 0.28 -48.89 16 9 Si 0.95 39.95 29.54 68.60 2.03 41.97 16 10 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 11 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 C 0.55 24.18 7.20 86.72 0.62 24.80 16 14 O -0.59 -27.13 16.57 -3.98 -0.07 -27.19 16 15 C -0.11 -4.62 4.72 -20.09 -0.09 -4.72 16 16 C -0.09 -3.69 7.71 22.51 0.17 -3.51 16 17 C -0.12 -4.20 9.96 22.31 0.22 -3.98 16 18 C 0.09 3.13 6.72 22.69 0.15 3.28 16 19 O -0.49 -14.00 13.27 -77.34 -1.03 -15.02 16 20 C 0.08 2.77 6.69 22.53 0.15 2.92 16 21 O -0.32 -9.27 10.28 -79.59 -0.82 -10.09 16 22 C 0.02 0.33 9.81 113.37 1.11 1.44 16 23 C -0.15 -5.41 8.70 22.61 0.20 -5.21 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.07 2.67 7.34 -2.39 -0.02 2.65 16 28 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 29 H 0.03 1.44 5.96 -2.39 -0.01 1.43 16 30 H 0.02 0.93 8.12 -2.39 -0.02 0.91 16 31 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 32 H 0.15 6.63 4.95 -2.91 -0.01 6.61 16 33 H 0.15 4.78 8.06 -2.91 -0.02 4.75 16 34 H 0.41 7.10 9.06 -74.06 -0.67 6.43 16 35 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.21 7.65 -2.39 -0.02 1.19 16 37 H 0.05 1.15 7.67 -2.39 -0.02 1.13 16 38 H 0.14 4.64 6.28 -2.91 -0.02 4.62 16 Total: -1.00 -63.28 323.16 3.61 -59.67 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.42 Total: 23.57 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 4.84 Total: 3.25 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -1.76 Total: -76.16 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -1.91 Total: -52.30 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.97 kcal Total: -63.28 3.61 -59.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268091302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.770 kcal (2) G-P(sol) polarization free energy of solvation -63.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds