Wall clock time and date at job start Fri Apr 10 2020 17:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35993 * 117.00049 * 2 1 4 4 C 1.38147 * 120.00381 * 0.02562 * 3 2 1 5 5 C 1.39731 * 119.85103 * 179.97438 * 4 3 2 6 6 C 1.47611 * 120.06907 * 179.97438 * 5 4 3 7 7 O 1.21584 * 119.99630 * 20.71377 * 6 5 4 8 8 N 1.34773 * 119.99960 * 200.71034 * 6 5 4 9 9 C 1.46494 * 119.99932 * 6.95199 * 8 6 5 10 10 C 1.46498 * 119.99798 * 186.94436 * 8 6 5 11 11 H 1.09000 * 109.47384 * 0.02562 * 10 8 6 12 12 C 1.53003 * 109.47399 * 240.00118 * 10 8 6 13 13 C 1.50708 * 109.46979 * 120.00141 * 10 8 6 14 14 H 1.07998 * 119.99897 * 0.02562 * 13 10 8 15 15 C 1.37873 * 120.00215 * 180.02562 * 13 10 8 16 16 N 1.31519 * 119.99802 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00160 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.46935 * 59.99927 * 17 15 13 19 19 H 1.48502 * 109.47189 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46951 * 299.99994 * 17 15 13 21 21 C 1.39702 * 119.85893 * 0.25004 * 5 4 3 22 22 C 1.37788 * 120.00000 * 359.49298 * 21 5 4 23 23 C 1.38833 * 120.15315 * 0.50916 * 22 21 5 24 24 O 1.35802 * 119.92873 * 179.72364 * 23 22 21 25 25 H 1.09003 * 109.47025 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46972 * 299.99638 * 1 2 3 27 27 H 1.08990 * 109.47094 * 60.00412 * 1 2 3 28 28 H 1.07997 * 120.07319 * 359.97438 * 4 3 2 29 29 H 1.09006 * 109.47271 * 266.47467 * 9 8 6 30 30 H 1.09000 * 109.47553 * 26.47607 * 9 8 6 31 31 H 1.09007 * 109.47192 * 146.48120 * 9 8 6 32 32 H 1.08999 * 109.46841 * 60.00433 * 12 10 8 33 33 H 1.08999 * 109.47171 * 180.02562 * 12 10 8 34 34 H 1.08997 * 109.46721 * 300.00214 * 12 10 8 35 35 H 0.97005 * 119.99815 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.99595 * 179.71974 * 21 5 4 37 37 H 1.08001 * 119.92261 * 180.23183 * 22 21 5 38 38 H 0.96701 * 113.99791 * 270.01830 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2941 2.3704 0.0005 5 6 1.9318 3.6137 0.0011 6 6 1.1327 4.8548 0.0011 7 8 -0.0246 4.8325 0.3731 8 7 1.6859 6.0125 -0.4112 9 6 3.0268 6.0142 -1.0013 10 6 0.9464 7.2691 -0.2693 11 1 -0.0235 7.0704 0.1867 12 6 0.7424 7.8994 -1.6485 13 6 1.7277 8.2158 0.6051 14 1 2.6800 7.9119 1.0139 15 6 1.2267 9.4698 0.8833 16 7 0.0672 9.8400 0.3851 17 14 2.1954 10.6434 1.9666 18 1 3.5164 10.9147 1.3449 19 1 1.4457 11.9172 2.1105 20 1 2.3944 10.0316 3.3049 21 6 3.3273 3.6796 -0.0042 22 6 4.0718 2.5202 0.0006 23 6 3.4385 1.2847 0.0001 24 8 4.1768 0.1449 -0.0009 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 0.2156 2.3153 0.0005 29 1 3.7653 6.2130 -0.2247 30 1 3.2265 5.0423 -1.4524 31 1 3.0862 6.7888 -1.7660 32 1 0.1773 7.2147 -2.2809 33 1 0.1926 8.8346 -1.5428 34 1 1.7125 8.0982 -2.1041 35 1 -0.2852 10.7224 0.5805 36 1 3.8224 4.6394 -0.0084 37 1 5.1505 2.5727 0.0003 38 1 4.3906 -0.1845 -0.8845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268400529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:39 Heat of formation + Delta-G solvation = -61.992019 kcal Electronic energy + Delta-G solvation = -21907.781972 eV Core-core repulsion = 18524.330882 eV Total energy + Delta-G solvation = -3383.451090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63667 -39.15255 -37.83314 -36.24606 -35.49783 -32.97348 -30.49467 -30.44129 -28.89979 -27.24624 -26.52991 -25.25439 -23.51358 -22.24235 -21.13692 -19.25503 -18.48489 -17.70230 -16.64241 -16.34901 -16.06255 -15.58199 -15.45085 -15.19292 -14.65332 -14.45645 -14.12069 -13.87538 -13.30848 -12.98040 -12.59858 -12.49860 -12.23996 -12.04210 -11.69245 -11.55868 -11.39260 -11.07551 -10.91999 -10.86029 -10.72202 -10.41932 -10.29450 -10.16935 -9.23321 -9.11740 -8.88050 -8.46062 -8.15650 -7.65960 -6.10277 -4.18945 0.85741 1.32499 3.07241 3.18149 3.26424 3.31741 3.33655 3.81706 3.95240 4.10169 4.37335 4.80790 4.85595 5.04344 5.09302 5.15840 5.21057 5.23545 5.41251 5.50748 5.63085 5.74210 5.93922 6.03029 6.15905 6.24773 6.37522 6.54348 6.73644 6.79397 7.01570 7.08657 7.37070 7.46973 7.61800 7.67280 7.97588 8.14102 8.44161 8.76939 8.95307 9.47685 10.94961 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.027680 B = 0.004291 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.320976 B = 6523.473585 C = 6983.303087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.090 3.910 4 C -0.142 4.142 5 C -0.088 4.088 6 C 0.544 3.456 7 O -0.548 6.548 8 N -0.583 5.583 9 C 0.072 3.928 10 C 0.258 3.742 11 H 0.064 0.936 12 C -0.147 4.147 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.900 3.100 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.129 4.129 22 C -0.118 4.118 23 C 0.087 3.913 24 O -0.487 6.487 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.143 0.857 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.012 0.988 33 H 0.094 0.906 34 H 0.031 0.969 35 H 0.264 0.736 36 H 0.161 0.839 37 H 0.140 0.860 38 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.707 -15.436 -4.942 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.223 6.223 3 C 0.044 3.956 4 C -0.162 4.162 5 C -0.092 4.092 6 C 0.331 3.669 7 O -0.428 6.428 8 N -0.313 5.313 9 C -0.071 4.071 10 C 0.158 3.842 11 H 0.082 0.918 12 C -0.206 4.206 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.147 4.147 22 C -0.136 4.136 23 C 0.041 3.959 24 O -0.296 6.296 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.160 0.840 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.178 0.822 37 H 0.157 0.843 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.998 -15.370 -4.149 17.013 hybrid contribution 0.374 0.780 0.099 0.871 sum 6.372 -14.590 -4.050 16.428 Atomic orbital electron populations 1.23117 0.78290 1.03859 1.01941 1.86111 1.21370 1.25947 1.88915 1.19286 0.91654 0.84824 0.99811 1.21259 1.00906 0.90429 1.03563 1.20086 0.93853 0.93826 1.01419 1.18129 0.86564 0.83242 0.78964 1.90729 1.17004 1.85855 1.49221 1.48141 1.16881 1.08204 1.58051 1.22194 0.84891 1.01819 0.98216 1.19005 0.93419 0.77854 0.93921 0.91778 1.22091 0.99525 1.02396 0.96556 1.21265 1.06055 0.98756 1.30593 0.92254 1.24889 0.95022 0.97907 0.95889 1.69872 1.17970 1.20485 1.44192 0.86533 0.79821 0.79955 0.80951 1.20190 1.21147 1.20214 1.22258 0.93068 1.00182 0.99201 1.21213 1.00633 0.90526 1.01264 1.17941 0.86054 0.86567 1.05326 1.84833 1.72026 1.39608 1.33147 0.88191 0.92259 0.92457 0.83957 0.92423 0.91275 0.90943 0.96877 0.88709 0.95017 0.92572 0.82176 0.84271 0.75948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.05 10.28 -34.38 -0.35 -4.40 16 3 C 0.09 1.27 6.69 -39.18 -0.26 1.01 16 4 C -0.14 -2.22 8.57 -39.06 -0.33 -2.55 16 5 C -0.09 -1.51 5.57 -104.97 -0.58 -2.09 16 6 C 0.54 11.63 7.51 -12.44 -0.09 11.53 16 7 O -0.55 -13.72 15.88 5.29 0.08 -13.63 16 8 N -0.58 -12.41 2.75 -176.46 -0.49 -12.89 16 9 C 0.07 1.17 7.91 59.84 0.47 1.64 16 10 C 0.26 6.54 2.63 -69.08 -0.18 6.36 16 11 H 0.06 1.89 6.92 -51.93 -0.36 1.53 16 12 C -0.15 -3.48 8.94 37.16 0.33 -3.15 16 13 C -0.53 -14.07 8.37 -34.44 -0.29 -14.36 16 14 H 0.06 1.54 7.55 -52.49 -0.40 1.15 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 16 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 17 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.13 -1.80 7.60 -39.20 -0.30 -2.10 16 22 C -0.12 -1.42 9.96 -39.53 -0.39 -1.82 16 23 C 0.09 1.13 6.72 -38.93 -0.26 0.87 16 24 O -0.49 -5.55 13.27 -33.78 -0.45 -6.00 16 25 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.59 7.66 -51.93 -0.40 0.20 16 27 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 28 H 0.14 2.20 6.01 -52.49 -0.32 1.88 16 29 H 0.06 0.88 6.88 -51.93 -0.36 0.52 16 30 H 0.07 0.92 5.27 -51.93 -0.27 0.65 16 31 H 0.07 1.17 6.44 -51.92 -0.33 0.84 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 34 H 0.03 0.68 6.68 -51.93 -0.35 0.34 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.16 2.08 4.02 -52.49 -0.21 1.87 16 37 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.39 2.50 9.06 45.56 0.41 2.91 16 LS Contribution 312.81 15.07 4.71 4.71 Total: -1.00 -32.98 312.81 -5.57 -38.55 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -3.69 Total: 3.87 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.00 Total: -1.77 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.14 Total: -37.11 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.72 Total: -24.03 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.98 -5.57 -38.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268400529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.442 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds