Wall clock time and date at job start Fri Apr 10 2020 17:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08988 * 109.47804 * 2 1 4 4 C 1.50701 * 109.46983 * 120.00296 * 2 1 3 5 5 H 1.08005 * 119.99935 * 116.61791 * 4 2 1 6 6 C 1.37877 * 120.00206 * 296.62390 * 4 2 1 7 7 N 1.31514 * 119.99641 * 351.52449 * 6 4 2 8 8 Si 1.86799 * 120.00131 * 171.80826 * 6 4 2 9 9 H 1.48505 * 109.46565 * 264.97209 * 8 6 4 10 10 H 1.48494 * 109.47297 * 24.97223 * 8 6 4 11 11 H 1.48497 * 109.46920 * 144.97545 * 8 6 4 12 12 N 1.46502 * 109.46800 * 239.99943 * 2 1 3 13 13 C 1.46503 * 120.00362 * 300.00504 * 12 2 1 14 14 C 1.34781 * 120.00180 * 120.00415 * 12 2 1 15 15 O 1.21287 * 119.99492 * 0.02562 * 14 12 2 16 16 C 1.50694 * 120.00297 * 179.97438 * 14 12 2 17 17 O 1.42896 * 109.47093 * 179.97438 * 16 14 12 18 18 C 1.36000 * 117.00080 * 179.97438 * 17 16 14 19 19 C 1.38569 * 120.07008 * 0.02562 * 18 17 16 20 20 C 1.38243 * 119.99454 * 180.02562 * 19 18 17 21 21 C 1.38249 * 120.14931 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.14624 * 0.02562 * 21 20 19 23 23 C 1.38563 * 120.00277 * 359.71876 * 22 21 20 24 24 O 1.35993 * 120.07673 * 180.27467 * 23 22 21 25 25 H 1.08995 * 109.46632 * 305.90308 * 1 2 3 26 26 H 1.09009 * 109.46613 * 65.89486 * 1 2 3 27 27 H 1.08992 * 109.47639 * 185.89884 * 1 2 3 28 28 H 0.96998 * 119.99879 * 180.27648 * 7 6 4 29 29 H 1.09001 * 109.47202 * 89.99837 * 13 12 2 30 30 H 1.09003 * 109.47187 * 210.00516 * 13 12 2 31 31 H 1.09001 * 109.46679 * 329.99889 * 13 12 2 32 32 H 1.09000 * 109.47119 * 300.00271 * 16 14 12 33 33 H 1.09000 * 109.47150 * 60.00094 * 16 14 12 34 34 H 1.07994 * 120.00078 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.92166 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.92891 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.99914 * 179.97438 * 22 21 20 38 38 H 0.96696 * 114.00227 * 270.27499 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6074 -1.6194 1.1322 6 6 1.7576 -0.2003 2.4815 7 7 1.2049 0.9871 2.6006 8 14 2.1777 -1.1923 4.0076 9 1 0.9819 -1.9558 4.4462 10 1 3.2810 -2.1362 3.6963 11 1 2.6040 -0.2733 5.0934 12 7 2.0183 -0.6906 -1.1962 13 6 1.6642 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0866 1.1253 -1.8912 16 6 3.2959 -0.7463 -3.3136 17 8 4.0892 0.1521 -4.0917 18 6 4.6234 -0.3353 -5.2436 19 6 4.3884 -1.6490 -5.6165 20 6 4.9326 -2.1429 -6.7874 21 6 5.7112 -1.3287 -7.5888 22 6 5.9495 -0.0172 -7.2225 23 6 5.4027 0.4858 -6.0529 24 8 5.6315 1.7774 -5.6940 25 1 -0.3632 0.6026 0.8324 26 1 -0.3633 0.4198 -0.9382 27 1 -0.3634 -1.0221 0.1056 28 1 1.0153 1.3478 3.4808 29 1 0.7374 -2.1443 -1.9995 30 1 2.4627 -2.5820 -1.9865 31 1 1.5293 -2.5969 -0.4709 32 1 3.9015 -1.6025 -3.0166 33 1 2.4483 -1.0891 -3.9070 34 1 3.7809 -2.2872 -4.9920 35 1 4.7491 -3.1671 -7.0767 36 1 6.1349 -1.7184 -8.5026 37 1 6.5584 0.6166 -7.8502 38 1 6.4206 1.9002 -5.1488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269417961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:46 Heat of formation + Delta-G solvation = -81.893330 kcal Electronic energy + Delta-G solvation = -21478.540550 eV Core-core repulsion = 18094.226474 eV Total energy + Delta-G solvation = -3384.314076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52136 -39.12927 -37.55705 -36.53593 -35.31720 -32.91799 -30.52090 -30.34918 -29.43923 -27.52914 -26.15999 -25.21990 -22.95011 -22.44342 -21.09347 -18.92728 -18.45805 -17.70689 -16.74618 -16.35564 -16.15300 -15.93574 -15.48406 -15.20486 -14.74153 -14.30747 -14.26987 -13.94519 -13.32213 -12.71810 -12.59540 -12.47366 -12.23541 -12.16108 -11.80712 -11.66593 -11.46486 -11.14015 -11.03159 -10.90733 -10.78038 -10.61996 -10.29142 -10.22556 -9.27505 -9.03877 -8.98970 -8.44285 -8.22688 -7.70384 -6.12120 -4.17627 1.04094 1.22182 2.85321 3.21128 3.24392 3.32247 3.34456 3.47303 4.02789 4.14616 4.37234 4.66445 4.73653 4.90619 5.02787 5.12280 5.16851 5.19715 5.20732 5.41199 5.60005 5.67307 5.91116 6.05295 6.08823 6.25081 6.27516 6.50792 6.67207 6.70801 6.94794 7.13377 7.31891 7.49313 7.64362 7.71533 7.89433 8.11442 8.41211 8.78711 8.95111 9.47497 10.95516 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.031112 B = 0.003597 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.767904 B = 7783.471978 C = 8008.857561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.258 3.742 3 H 0.069 0.931 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.589 5.589 13 C 0.079 3.921 14 C 0.506 3.494 15 O -0.526 6.526 16 C 0.040 3.960 17 O -0.277 6.277 18 C 0.110 3.890 19 C -0.200 4.200 20 C -0.088 4.088 21 C -0.149 4.149 22 C -0.108 4.108 23 C 0.075 3.925 24 O -0.485 6.485 25 H 0.078 0.922 26 H 0.015 0.985 27 H 0.034 0.966 28 H 0.264 0.736 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.271 -8.467 -17.134 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.158 3.842 3 H 0.087 0.913 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.323 5.323 13 C -0.065 4.065 14 C 0.290 3.710 15 O -0.402 6.402 16 C -0.039 4.039 17 O -0.189 6.189 18 C 0.063 3.937 19 C -0.219 4.219 20 C -0.106 4.106 21 C -0.167 4.167 22 C -0.127 4.127 23 C 0.029 3.971 24 O -0.294 6.294 25 H 0.097 0.903 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.846 -7.383 -17.085 19.509 hybrid contribution 0.460 -1.033 1.176 1.631 sum 6.306 -8.416 -15.909 19.071 Atomic orbital electron populations 1.22019 0.98258 1.00084 0.99561 1.18996 0.90618 0.95011 0.79566 0.91271 1.21270 1.35225 1.10311 0.90223 0.92117 1.24903 0.95054 0.94679 0.98966 1.69962 1.42758 1.15354 1.23996 0.86508 0.78548 0.79944 0.82554 1.20586 1.19894 1.21113 1.48174 1.49044 1.11670 1.23385 1.21679 0.98807 0.83221 1.02804 1.19755 0.80194 0.87354 0.83681 1.90717 1.57042 1.16571 1.75871 1.22716 0.95475 0.92966 0.92699 1.86287 1.63154 1.38391 1.31026 1.19660 0.95114 0.92242 0.86664 1.21252 1.05788 0.94673 1.00185 1.20961 0.96208 0.99816 0.93631 1.20920 1.01361 0.93609 1.00813 1.21258 0.99590 0.95783 0.96047 1.17806 1.00538 0.84457 0.94278 1.84906 1.50319 1.21393 1.72771 0.90307 0.96564 0.94684 0.92613 0.93536 0.93037 0.89622 0.89487 0.89600 0.84926 0.85525 0.85568 0.84810 0.75647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.85 37.16 0.33 -2.95 16 2 C 0.26 6.53 2.52 -69.08 -0.17 6.36 16 3 H 0.07 2.07 6.89 -51.94 -0.36 1.71 16 4 C -0.53 -14.18 8.00 -34.44 -0.28 -14.45 16 5 H 0.06 1.58 7.22 -52.48 -0.38 1.20 16 6 C 0.07 1.83 5.24 -17.82 -0.09 1.73 16 7 N -0.88 -25.14 12.01 55.43 0.67 -24.48 16 8 Si 0.90 20.75 29.55 -169.99 -5.02 15.73 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.59 -12.36 2.75 -175.26 -0.48 -12.84 16 13 C 0.08 1.23 9.35 59.85 0.56 1.79 16 14 C 0.51 10.72 7.75 -10.99 -0.09 10.64 16 15 O -0.53 -13.75 15.83 -14.36 -0.23 -13.98 16 16 C 0.04 0.63 3.77 36.00 0.14 0.76 16 17 O -0.28 -4.85 9.45 -47.36 -0.45 -5.30 16 18 C 0.11 1.58 6.70 -39.12 -0.26 1.32 16 19 C -0.20 -2.26 9.04 -39.46 -0.36 -2.61 16 20 C -0.09 -0.82 10.04 -39.58 -0.40 -1.21 16 21 C -0.15 -1.34 10.04 -39.58 -0.40 -1.74 16 22 C -0.11 -1.12 9.98 -39.46 -0.39 -1.52 16 23 C 0.07 1.00 6.72 -39.12 -0.26 0.74 16 24 O -0.48 -6.70 13.29 -34.22 -0.45 -7.15 16 25 H 0.08 2.01 6.84 -51.93 -0.36 1.65 16 26 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.03 0.75 7.86 -51.93 -0.41 0.34 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.62 6.44 -51.93 -0.33 0.29 16 31 H 0.09 1.42 6.96 -51.93 -0.36 1.06 16 32 H 0.09 1.12 6.92 -51.93 -0.36 0.76 16 33 H 0.09 1.10 7.63 -51.93 -0.40 0.70 16 34 H 0.13 1.25 6.30 -52.49 -0.33 0.92 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.39 3.70 9.06 45.56 0.41 4.11 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -34.36 323.09 -6.89 -41.25 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.12 Total: 3.06 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.67 Total: -1.16 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.18 Total: -37.32 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -1.13 Total: -26.43 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.36 -6.89 -41.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269417961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.646 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds