Wall clock time and date at job start Fri Apr 10 2020 17:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08988 * 109.47804 * 2 1 4 4 C 1.50701 * 109.46983 * 120.00296 * 2 1 3 5 5 H 1.08005 * 119.99935 * 116.61791 * 4 2 1 6 6 C 1.37877 * 120.00206 * 296.62390 * 4 2 1 7 7 N 1.31514 * 119.99641 * 351.52449 * 6 4 2 8 8 Si 1.86799 * 120.00131 * 171.80826 * 6 4 2 9 9 H 1.48505 * 109.46565 * 264.97209 * 8 6 4 10 10 H 1.48494 * 109.47297 * 24.97223 * 8 6 4 11 11 H 1.48497 * 109.46920 * 144.97545 * 8 6 4 12 12 N 1.46502 * 109.46800 * 239.99943 * 2 1 3 13 13 C 1.46503 * 120.00362 * 300.00504 * 12 2 1 14 14 C 1.34781 * 120.00180 * 120.00415 * 12 2 1 15 15 O 1.21287 * 119.99492 * 0.02562 * 14 12 2 16 16 C 1.50694 * 120.00297 * 179.97438 * 14 12 2 17 17 O 1.42896 * 109.47093 * 179.97438 * 16 14 12 18 18 C 1.36000 * 117.00080 * 179.97438 * 17 16 14 19 19 C 1.38569 * 120.07008 * 0.02562 * 18 17 16 20 20 C 1.38243 * 119.99454 * 180.02562 * 19 18 17 21 21 C 1.38249 * 120.14931 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.14624 * 0.02562 * 21 20 19 23 23 C 1.38563 * 120.00277 * 359.71876 * 22 21 20 24 24 O 1.35993 * 120.07673 * 180.27467 * 23 22 21 25 25 H 1.08995 * 109.46632 * 305.90308 * 1 2 3 26 26 H 1.09009 * 109.46613 * 65.89486 * 1 2 3 27 27 H 1.08992 * 109.47639 * 185.89884 * 1 2 3 28 28 H 0.96998 * 119.99879 * 180.27648 * 7 6 4 29 29 H 1.09001 * 109.47202 * 89.99837 * 13 12 2 30 30 H 1.09003 * 109.47187 * 210.00516 * 13 12 2 31 31 H 1.09001 * 109.46679 * 329.99889 * 13 12 2 32 32 H 1.09000 * 109.47119 * 300.00271 * 16 14 12 33 33 H 1.09000 * 109.47150 * 60.00094 * 16 14 12 34 34 H 1.07994 * 120.00078 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.92166 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.92891 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.99914 * 179.97438 * 22 21 20 38 38 H 0.96696 * 114.00227 * 270.27499 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6074 -1.6194 1.1322 6 6 1.7576 -0.2003 2.4815 7 7 1.2049 0.9871 2.6006 8 14 2.1777 -1.1923 4.0076 9 1 0.9819 -1.9558 4.4462 10 1 3.2810 -2.1362 3.6963 11 1 2.6040 -0.2733 5.0934 12 7 2.0183 -0.6906 -1.1962 13 6 1.6642 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0866 1.1253 -1.8912 16 6 3.2959 -0.7463 -3.3136 17 8 4.0892 0.1521 -4.0917 18 6 4.6234 -0.3353 -5.2436 19 6 4.3884 -1.6490 -5.6165 20 6 4.9326 -2.1429 -6.7874 21 6 5.7112 -1.3287 -7.5888 22 6 5.9495 -0.0172 -7.2225 23 6 5.4027 0.4858 -6.0529 24 8 5.6315 1.7774 -5.6940 25 1 -0.3632 0.6026 0.8324 26 1 -0.3633 0.4198 -0.9382 27 1 -0.3634 -1.0221 0.1056 28 1 1.0153 1.3478 3.4808 29 1 0.7374 -2.1443 -1.9995 30 1 2.4627 -2.5820 -1.9865 31 1 1.5293 -2.5969 -0.4709 32 1 3.9015 -1.6025 -3.0166 33 1 2.4483 -1.0891 -3.9070 34 1 3.7809 -2.2872 -4.9920 35 1 4.7491 -3.1671 -7.0767 36 1 6.1349 -1.7184 -8.5026 37 1 6.5584 0.6166 -7.8502 38 1 6.4206 1.9002 -5.1488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269417961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:45 Heat of formation + Delta-G solvation = -106.058798 kcal Electronic energy + Delta-G solvation = -21479.588443 eV Core-core repulsion = 18094.226474 eV Total energy + Delta-G solvation = -3385.361969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57085 -40.59004 -38.70928 -37.43980 -37.09297 -34.84210 -32.05716 -31.27708 -30.58470 -28.77561 -27.57332 -27.27883 -24.01556 -23.35451 -22.65871 -20.21515 -19.76472 -18.72018 -18.56213 -17.70544 -17.42720 -17.36038 -16.76328 -16.49028 -16.00178 -15.69597 -15.46037 -14.95153 -14.78055 -14.42034 -13.97519 -13.71902 -13.65043 -13.26853 -13.09622 -13.00838 -12.88736 -12.78902 -12.63619 -12.36129 -12.27012 -12.12811 -12.06357 -11.50757 -11.24137 -10.70570 -10.51120 -9.82581 -9.41946 -9.13278 -8.17994 -6.32011 0.25387 0.39494 1.41721 1.42805 1.52972 1.62685 1.65753 2.40022 2.67238 2.72293 3.11756 3.30382 3.50452 3.86760 3.97907 4.05506 4.11081 4.34391 4.43768 4.47726 4.61404 4.73724 4.74042 4.83021 4.93172 4.98501 5.03335 5.27049 5.35829 5.45951 5.48579 5.52701 5.64286 5.78189 5.95325 6.10114 6.23723 6.71359 6.76218 6.85776 7.25226 7.41604 8.89456 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.031112 B = 0.003597 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.767904 B = 7783.471978 C = 8008.857561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.259 3.741 3 H 0.008 0.992 4 C -0.541 4.541 5 H 0.067 0.933 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.265 1.265 11 H -0.290 1.290 12 N -0.593 5.593 13 C 0.071 3.929 14 C 0.492 3.508 15 O -0.594 6.594 16 C 0.055 3.945 17 O -0.318 6.318 18 C 0.073 3.927 19 C -0.200 4.200 20 C -0.084 4.084 21 C -0.139 4.139 22 C -0.111 4.111 23 C 0.045 3.955 24 O -0.509 6.509 25 H 0.050 0.950 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.264 0.736 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -12.390 -19.019 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.157 3.843 3 H 0.026 0.974 4 C -0.579 4.579 5 H 0.085 0.915 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.189 1.189 11 H -0.216 1.216 12 N -0.325 5.325 13 C -0.071 4.071 14 C 0.279 3.721 15 O -0.475 6.475 16 C -0.022 4.022 17 O -0.232 6.232 18 C 0.028 3.972 19 C -0.218 4.218 20 C -0.102 4.102 21 C -0.157 4.157 22 C -0.129 4.129 23 C 0.000 4.000 24 O -0.320 6.320 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.171 0.829 35 H 0.180 0.820 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.274 -11.373 -19.003 23.017 hybrid contribution 0.384 0.179 1.634 1.688 sum 6.658 -11.193 -17.369 21.709 Atomic orbital electron populations 1.21798 0.96841 1.00829 0.98918 1.18592 0.91659 0.92473 0.81551 0.97403 1.21575 1.35095 1.10356 0.90904 0.91456 1.25806 0.94987 0.95528 1.02278 1.70119 1.44069 1.17083 1.24637 0.85412 0.78827 0.78341 0.78242 1.19208 1.18943 1.21588 1.48162 1.48630 1.13753 1.21981 1.22031 1.01783 0.79844 1.03432 1.20832 0.79217 0.86871 0.85130 1.90677 1.59405 1.19752 1.77655 1.22615 0.97090 0.92187 0.90345 1.86213 1.64257 1.40012 1.32699 1.19999 0.96856 0.94034 0.86326 1.21548 1.05752 0.93388 1.01149 1.21421 0.94923 1.01389 0.92491 1.21393 1.00081 0.92693 1.01576 1.21523 0.99413 0.96925 0.95038 1.18284 1.01803 0.84317 0.95638 1.84848 1.51384 1.22561 1.73256 0.93082 0.95536 0.92523 0.92672 0.90823 0.88744 0.90570 0.86218 0.86157 0.82883 0.82007 0.82208 0.83081 0.74392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 8.85 71.98 0.64 -5.31 16 2 C 0.26 13.58 2.52 44.24 0.11 13.69 16 3 H 0.01 0.51 6.89 -2.39 -0.02 0.49 16 4 C -0.54 -29.21 8.00 25.60 0.20 -29.01 16 5 H 0.07 3.46 7.22 -2.91 -0.02 3.44 16 6 C 0.01 0.76 5.24 84.65 0.44 1.20 16 7 N -0.92 -54.30 12.01 21.45 0.26 -54.04 16 8 Si 0.97 42.71 29.55 68.60 2.03 44.73 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 N -0.59 -24.77 2.75 -826.79 -2.28 -27.05 16 13 C 0.07 1.99 9.35 127.77 1.19 3.18 16 14 C 0.49 21.22 7.75 87.65 0.68 21.90 16 15 O -0.59 -33.14 15.83 15.98 0.25 -32.88 16 16 C 0.06 1.63 3.77 71.23 0.27 1.90 16 17 O -0.32 -11.26 9.45 -67.13 -0.63 -11.90 16 18 C 0.07 2.04 6.70 22.57 0.15 2.19 16 19 C -0.20 -3.86 9.04 22.35 0.20 -3.66 16 20 C -0.08 -1.19 10.04 22.27 0.22 -0.97 16 21 C -0.14 -1.96 10.04 22.27 0.22 -1.74 16 22 C -0.11 -2.08 9.98 22.35 0.22 -1.86 16 23 C 0.04 1.19 6.72 22.57 0.15 1.34 16 24 O -0.51 -14.82 13.29 -79.61 -1.06 -15.87 16 25 H 0.05 2.69 6.84 -2.39 -0.02 2.67 16 26 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.06 2.39 7.86 -2.39 -0.02 2.37 16 28 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.84 6.44 -2.39 -0.02 1.82 16 31 H 0.08 2.31 6.96 -2.39 -0.02 2.30 16 32 H 0.12 2.68 6.92 -2.39 -0.02 2.66 16 33 H 0.12 2.66 7.63 -2.39 -0.02 2.65 16 34 H 0.15 2.18 6.30 -2.91 -0.02 2.16 16 35 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.40 8.39 9.06 -74.06 -0.67 7.72 16 Total: -1.00 -81.52 323.09 3.69 -77.83 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.41 Total: 16.30 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 4.71 Total: 2.88 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -2.02 Total: -81.09 kcal Atomic # 8 Polarization: -59.21 SS G_CDS: -1.44 Total: -60.65 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -81.52 3.69 -77.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269417961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.230 kcal (2) G-P(sol) polarization free energy of solvation -81.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds