Wall clock time and date at job start Fri Apr 10 2020 17:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34592 * 125.75024 * 2 1 4 4 N 1.30868 * 107.62678 * 179.82628 * 3 2 1 5 5 C 1.34553 * 107.26692 * 0.42511 * 4 3 2 6 6 C 1.47873 * 126.04596 * 179.71099 * 5 4 3 7 7 O 1.21556 * 119.99888 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99844 * 0.02562 * 6 5 4 9 9 C 1.46497 * 119.99630 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47206 * 179.97438 * 9 8 6 11 11 H 1.08997 * 112.84617 * 45.33736 * 10 9 8 12 12 C 1.53780 * 113.61497 * 176.52992 * 10 9 8 13 13 C 1.53782 * 87.07749 * 139.98428 * 12 10 9 14 14 H 1.08999 * 113.61749 * 89.11688 * 13 12 10 15 15 N 1.46507 * 113.61235 * 219.93360 * 13 12 10 16 16 C 1.36938 * 119.99823 * 205.00080 * 15 13 12 17 17 H 1.08003 * 120.00213 * 0.02562 * 16 15 13 18 18 C 1.38810 * 119.99985 * 180.02562 * 16 15 13 19 19 N 1.31617 * 119.99892 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00118 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46950 * 89.99830 * 20 18 16 22 22 H 1.48502 * 109.47139 * 209.99483 * 20 18 16 23 23 H 1.48495 * 109.47059 * 329.99902 * 20 18 16 24 24 C 1.53773 * 113.61459 * 274.14298 * 10 9 8 25 25 N 1.28851 * 125.74955 * 180.30022 * 2 1 3 26 26 H 1.09002 * 109.47391 * 269.72097 * 1 2 3 27 27 H 1.09001 * 109.46813 * 149.72153 * 1 2 3 28 28 H 1.09004 * 109.47041 * 29.72280 * 1 2 3 29 29 H 1.07998 * 126.18159 * 359.95423 * 3 2 1 30 30 H 0.96997 * 120.00369 * 0.02562 * 8 6 5 31 31 H 1.09000 * 109.47970 * 300.00210 * 9 8 6 32 32 H 1.09003 * 109.46944 * 60.00437 * 9 8 6 33 33 H 1.08999 * 113.61436 * 254.53283 * 12 10 9 34 34 H 1.09000 * 113.61514 * 25.35299 * 12 10 9 35 35 H 0.96993 * 119.99904 * 25.00496 * 15 13 12 36 36 H 0.97005 * 120.00041 * 180.02562 * 19 18 16 37 37 H 1.09001 * 113.61753 * 334.56080 * 24 10 9 38 38 H 1.08997 * 113.61870 * 105.47072 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4951 0.6852 0.0038 5 6 3.4750 -0.6601 -0.0034 6 6 4.6575 -1.5480 -0.0085 7 8 4.5114 -2.7547 -0.0154 8 7 5.8972 -1.0192 -0.0055 9 6 7.0687 -1.8989 -0.0100 10 6 8.3427 -1.0516 -0.0059 11 1 8.3042 -0.2329 0.7126 12 6 9.6345 -1.8820 0.0752 13 6 10.2386 -0.8960 -0.9386 14 1 10.7190 -0.0338 -0.4762 15 7 11.0776 -1.5383 -1.9535 16 6 12.0624 -0.8227 -2.5806 17 1 12.2210 0.2150 -2.3267 18 6 12.8570 -1.4311 -3.5425 19 7 12.6641 -2.6958 -3.8516 20 14 14.2000 -0.4548 -4.3985 21 1 15.4661 -0.5775 -3.6322 22 1 14.3990 -0.9849 -5.7713 23 1 13.8027 0.9741 -4.4723 24 6 8.7991 -0.6188 -1.4091 25 7 2.2178 -1.0457 -0.0055 26 1 -0.3634 -0.0050 1.0276 27 1 -0.3633 -0.8875 -0.5182 28 1 -0.3633 0.8925 -0.5095 29 1 1.9164 2.1190 -0.0007 30 1 6.0138 -0.0563 0.0004 31 1 7.0506 -2.5328 0.8766 32 1 7.0508 -2.5232 -0.9033 33 1 10.1133 -1.8502 1.0538 34 1 9.5268 -2.8958 -0.3106 35 1 10.9354 -2.4703 -2.1813 36 1 13.2196 -3.1211 -4.5236 37 1 8.4631 -1.2861 -2.2028 38 1 8.6047 0.4313 -1.6270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086078057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:44 Heat of formation + Delta-G solvation = 62.809665 kcal Electronic energy + Delta-G solvation = -20557.496181 eV Core-core repulsion = 17244.042400 eV Total energy + Delta-G solvation = -3313.453781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.44446 -40.82805 -39.71249 -36.14068 -35.56323 -34.96199 -32.79564 -32.20006 -29.65651 -28.00952 -26.43515 -25.93457 -24.77341 -23.19335 -22.34868 -21.69258 -20.51734 -19.27472 -18.90577 -17.79405 -17.46729 -17.31020 -16.68830 -16.45625 -16.02075 -15.77630 -15.46570 -15.06971 -14.78786 -14.47103 -13.96990 -13.90068 -13.41549 -13.20935 -13.01465 -12.91660 -12.86062 -12.65596 -12.18399 -12.07012 -11.72794 -11.57549 -11.53419 -11.45263 -11.32415 -11.03301 -10.79424 -10.63110 -10.13523 -8.95745 -7.92731 -5.20992 0.27825 1.11384 1.29597 1.48214 1.50197 1.58549 2.05494 2.22642 2.58283 3.09155 3.38844 3.48140 3.73893 3.75919 3.88728 3.95682 4.27692 4.34135 4.37557 4.41490 4.44292 4.56321 4.69884 4.73125 4.84118 4.99171 5.01373 5.05921 5.21382 5.29512 5.31935 5.42359 5.54188 5.65526 5.74746 6.29611 6.33222 6.92330 7.08699 7.34978 8.13671 8.35502 9.30877 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035781 B = 0.002634 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.354580 B =10628.203411 C =10895.071601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.300 5.300 3 C 0.207 3.793 4 N -0.508 5.508 5 C 0.117 3.883 6 C 0.607 3.393 7 O -0.567 6.567 8 N -0.689 5.689 9 C 0.138 3.862 10 C -0.096 4.096 11 H 0.122 0.878 12 C -0.134 4.134 13 C 0.144 3.856 14 H 0.082 0.918 15 N -0.730 5.730 16 C -0.241 4.241 17 H 0.080 0.920 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.974 3.026 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.268 1.268 24 C -0.155 4.155 25 N -0.287 5.287 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.144 0.856 29 H 0.282 0.718 30 H 0.420 0.580 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.372 0.628 36 H 0.250 0.750 37 H 0.055 0.945 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.068 12.183 11.587 31.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.096 5.096 3 C -0.087 4.087 4 N -0.234 5.234 5 C -0.162 4.162 6 C 0.390 3.610 7 O -0.444 6.444 8 N -0.341 5.341 9 C 0.014 3.986 10 C -0.115 4.115 11 H 0.140 0.860 12 C -0.173 4.173 13 C 0.035 3.965 14 H 0.100 0.900 15 N -0.367 5.367 16 C -0.373 4.373 17 H 0.098 0.902 18 C -0.273 4.273 19 N -0.624 5.624 20 Si 0.803 3.197 21 H -0.214 1.214 22 H -0.225 1.225 23 H -0.192 1.192 24 C -0.196 4.196 25 N -0.129 5.129 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.163 0.837 29 H 0.298 0.702 30 H 0.257 0.743 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.204 0.796 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.929 10.999 11.533 31.292 hybrid contribution 0.617 0.182 -0.910 1.115 sum -26.312 11.182 10.623 30.499 Atomic orbital electron populations 1.22778 0.69035 1.07899 1.06761 1.47831 1.10952 1.02979 1.47805 1.27537 0.84499 0.97637 0.99041 1.71219 1.23005 1.08076 1.21136 1.23444 0.91907 0.90382 1.10487 1.16627 0.82161 0.85603 0.76614 1.90796 1.86420 1.15454 1.51688 1.45605 1.03905 1.11879 1.72707 1.21407 0.82794 0.92483 1.01878 1.22476 0.91588 0.99053 0.98390 0.86007 1.23314 0.95319 0.98550 1.00144 1.21981 0.89323 0.95656 0.89569 0.89974 1.42638 1.37987 1.11572 1.44520 1.19744 1.08062 0.94951 1.14514 0.90250 1.25614 1.02940 0.97235 1.01560 1.69831 1.43497 1.12303 1.36743 0.85126 0.79233 0.78194 0.77143 1.21375 1.22516 1.19240 1.23772 0.99124 1.00817 0.95901 1.74261 1.03188 1.15827 1.19577 0.87340 0.88700 0.83746 0.70242 0.74259 0.90732 0.92830 0.89994 0.91268 0.79642 0.94147 0.92611 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.09 11.38 127.77 1.45 1.55 16 2 N -0.30 -4.02 3.72 -373.45 -1.39 -5.41 16 3 C 0.21 2.29 12.62 180.30 2.27 4.57 16 4 N -0.51 -10.62 11.09 -193.02 -2.14 -12.76 16 5 C 0.12 3.19 7.96 137.13 1.09 4.28 16 6 C 0.61 19.23 7.83 86.79 0.68 19.91 16 7 O -0.57 -22.20 17.09 -3.89 -0.07 -22.27 16 8 N -0.69 -18.21 5.55 -465.93 -2.59 -20.79 16 9 C 0.14 3.78 5.50 86.38 0.47 4.26 16 10 C -0.10 -2.50 3.75 -10.27 -0.04 -2.54 16 11 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 12 C -0.13 -4.18 7.40 31.12 0.23 -3.95 16 13 C 0.14 5.56 4.48 45.58 0.20 5.76 16 14 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 15 N -0.73 -37.39 5.41 -320.15 -1.73 -39.12 16 16 C -0.24 -13.50 9.97 84.03 0.84 -12.66 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 18 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 19 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 20 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C -0.16 -5.18 7.45 31.18 0.23 -4.94 16 25 N -0.29 -7.24 12.08 -52.43 -0.63 -7.88 16 26 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.14 -1.01 8.14 -2.38 -0.02 -1.03 16 29 H 0.28 -0.59 8.06 -2.91 -0.02 -0.62 16 30 H 0.42 9.38 8.18 -92.71 -0.76 8.62 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.71 7.87 -2.39 -0.02 1.70 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.36 8.08 -2.39 -0.02 2.34 16 35 H 0.37 20.69 7.93 -92.71 -0.73 19.96 16 36 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 37 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -83.87 331.96 1.27 -82.60 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.40 Total: 25.65 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 7.91 Total: 11.92 kcal Atomic # 7 Polarization: -138.47 SS G_CDS: -8.20 Total: -146.67 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.07 Total: -22.27 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -83.87 1.27 -82.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086078057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.413 kcal (2) G-P(sol) polarization free energy of solvation -83.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds