Wall clock time and date at job start Fri Apr 10 2020 17:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34812 * 126.59640 * 2 1 4 4 C 1.36592 * 106.83894 * 180.02562 * 3 2 1 5 5 C 1.47532 * 125.76838 * 179.97438 * 4 3 2 6 6 O 1.21592 * 119.99957 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99827 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99775 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46770 * 179.97438 * 8 7 5 10 10 H 1.08998 * 112.85273 * 316.19274 * 9 8 7 11 11 C 1.53777 * 113.61195 * 87.50624 * 9 8 7 12 12 C 1.53785 * 87.08241 * 139.97738 * 11 9 8 13 13 H 1.09002 * 113.61570 * 220.01842 * 12 11 9 14 14 N 1.46500 * 113.68813 * 89.12417 * 12 11 9 15 15 C 1.36936 * 119.99618 * 105.94148 * 14 12 11 16 16 H 1.07990 * 120.00427 * 359.97438 * 15 14 12 17 17 C 1.38824 * 119.99622 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00063 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99662 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47100 * 90.00073 * 19 17 15 21 21 H 1.48504 * 109.47148 * 209.99685 * 19 17 15 22 22 H 1.48493 * 109.47533 * 329.99863 * 19 17 15 23 23 C 1.53781 * 87.08241 * 334.56547 * 12 11 9 24 24 N 1.34398 * 108.46136 * 0.24852 * 4 3 2 25 25 N 1.28760 * 109.52158 * 359.58097 * 24 4 3 26 26 H 1.08998 * 109.47581 * 89.99371 * 1 2 3 27 27 H 1.09001 * 109.46783 * 209.99671 * 1 2 3 28 28 H 1.08998 * 109.46941 * 329.99176 * 1 2 3 29 29 H 1.08002 * 126.57998 * 0.02562 * 3 2 1 30 30 H 0.96999 * 119.99903 * 359.97438 * 7 5 4 31 31 H 1.09005 * 109.46913 * 60.00296 * 8 7 5 32 32 H 1.08994 * 109.47291 * 299.99793 * 8 7 5 33 33 H 1.08999 * 113.61947 * 25.43164 * 11 9 8 34 34 H 1.08997 * 113.61348 * 254.52379 * 11 9 8 35 35 H 0.96998 * 120.00149 * 285.93056 * 14 12 11 36 36 H 0.96996 * 120.00147 * 180.02562 * 18 17 15 37 37 H 1.09000 * 113.61578 * 139.97748 * 23 12 11 38 38 H 1.08997 * 113.61673 * 270.88717 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0823 0.0000 4 6 3.5542 0.6206 -0.0006 5 6 4.7705 1.4557 -0.0013 6 8 4.6756 2.6679 -0.0010 7 7 5.9867 0.8749 -0.0024 8 6 7.1944 1.7041 -0.0037 9 6 8.4313 0.8036 -0.0041 10 1 8.3473 -0.0312 0.6918 11 6 8.8922 0.3907 -1.4119 12 6 10.3331 0.5919 -0.9137 13 1 10.9872 1.0625 -1.6477 14 7 10.9215 -0.6082 -0.3139 15 6 11.8695 -1.3211 -0.9982 16 1 12.1831 -0.9988 -1.9801 17 6 12.4275 -2.4580 -0.4297 18 7 12.0457 -2.8505 0.7671 19 14 13.7202 -3.4308 -1.3635 20 1 15.0694 -2.9057 -1.0330 21 1 13.6378 -4.8622 -0.9766 22 1 13.4812 -3.2981 -2.8230 23 6 9.7556 1.5759 0.1174 24 7 3.5238 -0.7230 -0.0065 25 7 2.3009 -1.1258 -0.0007 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.9561 2.1161 0.0004 30 1 6.0623 -0.0922 -0.0023 31 1 7.2039 2.3335 0.8862 32 1 7.2023 2.3331 -0.8938 33 1 8.5976 1.0933 -2.1914 34 1 8.6573 -0.6438 -1.6623 35 1 10.6397 -0.8978 0.5679 36 1 12.4358 -3.6447 1.1645 37 1 10.2177 1.4983 1.1016 38 1 9.6970 2.6026 -0.2440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086353798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:49 Heat of formation + Delta-G solvation = 92.940656 kcal Electronic energy + Delta-G solvation = -20663.174183 eV Core-core repulsion = 17351.026980 eV Total energy + Delta-G solvation = -3312.147203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.43789 -39.53643 -38.36592 -35.04298 -34.55745 -33.14332 -31.31037 -30.12469 -28.48869 -27.15179 -25.00727 -24.03868 -23.26987 -22.50435 -21.58706 -20.56464 -18.67234 -18.00426 -17.22870 -16.56368 -16.33916 -16.05111 -15.24574 -14.89366 -14.84308 -14.34694 -14.11022 -13.78028 -13.72662 -13.42486 -13.11322 -12.85827 -12.39740 -12.23014 -11.86356 -11.53400 -11.34055 -10.99891 -10.81972 -10.70957 -10.45786 -10.30453 -10.13031 -9.81849 -9.65039 -9.58432 -9.43714 -8.94062 -8.83717 -6.95913 -5.76910 -3.05780 0.85070 1.53113 1.72277 3.15344 3.22014 3.44841 3.50049 3.51806 3.98729 4.01385 4.48889 4.49868 4.59220 4.70935 4.78595 5.05477 5.10874 5.13072 5.28218 5.49282 5.52370 5.68179 5.74920 5.90874 5.99035 6.00193 6.15381 6.25873 6.41865 6.44425 6.63930 6.81358 6.94804 7.10171 7.44826 7.72668 7.74640 8.16031 8.42341 9.52907 10.10954 10.45083 11.45603 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025664 B = 0.002977 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.781728 B = 9404.034774 C =10207.693571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.366 5.366 3 C 0.091 3.909 4 C -0.099 4.099 5 C 0.601 3.399 6 O -0.547 6.547 7 N -0.706 5.706 8 C 0.131 3.869 9 C -0.120 4.120 10 H 0.095 0.905 11 C -0.169 4.169 12 C 0.167 3.833 13 H 0.061 0.939 14 N -0.706 5.706 15 C -0.241 4.241 16 H 0.072 0.928 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.147 4.147 24 N -0.201 5.201 25 N -0.065 5.065 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.205 0.795 30 H 0.411 0.589 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.068 0.932 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.767 9.654 -0.949 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.151 5.151 3 C -0.066 4.066 4 C -0.239 4.239 5 C 0.385 3.615 6 O -0.424 6.424 7 N -0.356 5.356 8 C 0.008 3.992 9 C -0.139 4.139 10 H 0.113 0.887 11 C -0.210 4.210 12 C 0.055 3.945 13 H 0.079 0.921 14 N -0.345 5.345 15 C -0.372 4.372 16 H 0.090 0.910 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.186 4.186 24 N -0.074 5.074 25 N -0.045 5.045 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.222 0.778 30 H 0.247 0.753 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.651 8.888 -1.062 25.289 hybrid contribution 0.223 -0.138 -0.144 0.299 sum -23.428 8.750 -1.206 25.038 Atomic orbital electron populations 1.22197 0.72524 1.05807 1.04809 1.50410 1.09172 1.05766 1.49784 1.23367 0.90162 0.94987 0.98075 1.21563 0.94739 0.90436 1.17159 1.16756 0.81887 0.86249 0.76590 1.90793 1.86796 1.13081 1.51732 1.45886 1.05089 1.11545 1.73092 1.21552 0.82398 0.93302 1.01917 1.22726 0.92454 0.98750 0.99982 0.88725 1.23891 1.01418 1.01229 0.94452 1.21054 0.91448 0.88254 0.93752 0.92068 1.42171 1.46134 1.26384 1.19777 1.19285 1.13568 1.04828 0.99568 0.91008 1.24766 1.00530 0.98758 0.96877 1.69659 1.46156 1.26612 1.15618 0.86171 0.81548 0.79371 0.78989 1.21700 1.21775 1.20720 1.23428 0.95265 0.98513 1.01404 1.74680 1.12840 1.10288 1.09639 1.82046 0.93472 1.06338 1.22686 0.89177 0.88030 0.88384 0.77802 0.75328 0.91533 0.91292 0.91405 0.91405 0.78082 0.93448 0.91305 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.23 11.51 59.85 0.69 0.92 16 2 N -0.37 -2.99 4.03 -67.86 -0.27 -3.26 16 3 C 0.09 0.80 11.31 -16.84 -0.19 0.61 16 4 C -0.10 -1.24 6.99 -83.55 -0.58 -1.82 16 5 C 0.60 8.47 7.82 -12.47 -0.10 8.37 16 6 O -0.55 -8.73 16.86 5.28 0.09 -8.65 16 7 N -0.71 -9.73 5.55 -61.35 -0.34 -10.07 16 8 C 0.13 1.81 5.51 -4.04 -0.02 1.79 16 9 C -0.12 -1.86 3.64 -89.80 -0.33 -2.19 16 10 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 11 C -0.17 -2.90 7.43 -25.92 -0.19 -3.09 16 12 C 0.17 3.30 4.55 -67.12 -0.31 3.00 16 13 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 14 N -0.71 -17.64 5.31 -52.63 -0.28 -17.92 16 15 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 19 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.15 -2.37 7.38 -25.91 -0.19 -2.56 16 24 N -0.20 -2.74 12.04 32.85 0.40 -2.35 16 25 N -0.06 -0.79 13.78 60.35 0.83 0.04 16 26 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 27 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.21 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.41 5.57 8.16 -40.82 -0.33 5.24 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.95 7.84 -51.93 -0.41 0.55 16 33 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.39 10.18 7.90 -40.82 -0.32 9.86 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -34.51 332.34 -5.58 -40.09 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.24 Total: 9.43 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.47 Total: -2.31 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 1.06 Total: -61.03 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.51 -5.58 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086353798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.035 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds