Wall clock time and date at job start Fri Apr 10 2020 17:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34812 * 126.59640 * 2 1 4 4 C 1.36592 * 106.83894 * 180.02562 * 3 2 1 5 5 C 1.47532 * 125.76838 * 179.97438 * 4 3 2 6 6 O 1.21592 * 119.99957 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99827 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99775 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46770 * 179.97438 * 8 7 5 10 10 H 1.08998 * 112.85273 * 316.19274 * 9 8 7 11 11 C 1.53777 * 113.61195 * 87.50624 * 9 8 7 12 12 C 1.53785 * 87.08241 * 139.97738 * 11 9 8 13 13 H 1.09002 * 113.61570 * 220.01842 * 12 11 9 14 14 N 1.46500 * 113.68813 * 89.12417 * 12 11 9 15 15 C 1.36936 * 119.99618 * 105.94148 * 14 12 11 16 16 H 1.07990 * 120.00427 * 359.97438 * 15 14 12 17 17 C 1.38824 * 119.99622 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00063 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99662 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47100 * 90.00073 * 19 17 15 21 21 H 1.48504 * 109.47148 * 209.99685 * 19 17 15 22 22 H 1.48493 * 109.47533 * 329.99863 * 19 17 15 23 23 C 1.53781 * 87.08241 * 334.56547 * 12 11 9 24 24 N 1.34398 * 108.46136 * 0.24852 * 4 3 2 25 25 N 1.28760 * 109.52158 * 359.58097 * 24 4 3 26 26 H 1.08998 * 109.47581 * 89.99371 * 1 2 3 27 27 H 1.09001 * 109.46783 * 209.99671 * 1 2 3 28 28 H 1.08998 * 109.46941 * 329.99176 * 1 2 3 29 29 H 1.08002 * 126.57998 * 0.02562 * 3 2 1 30 30 H 0.96999 * 119.99903 * 359.97438 * 7 5 4 31 31 H 1.09005 * 109.46913 * 60.00296 * 8 7 5 32 32 H 1.08994 * 109.47291 * 299.99793 * 8 7 5 33 33 H 1.08999 * 113.61947 * 25.43164 * 11 9 8 34 34 H 1.08997 * 113.61348 * 254.52379 * 11 9 8 35 35 H 0.96998 * 120.00149 * 285.93056 * 14 12 11 36 36 H 0.96996 * 120.00147 * 180.02562 * 18 17 15 37 37 H 1.09000 * 113.61578 * 139.97748 * 23 12 11 38 38 H 1.08997 * 113.61673 * 270.88717 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0823 0.0000 4 6 3.5542 0.6206 -0.0006 5 6 4.7705 1.4557 -0.0013 6 8 4.6756 2.6679 -0.0010 7 7 5.9867 0.8749 -0.0024 8 6 7.1944 1.7041 -0.0037 9 6 8.4313 0.8036 -0.0041 10 1 8.3473 -0.0312 0.6918 11 6 8.8922 0.3907 -1.4119 12 6 10.3331 0.5919 -0.9137 13 1 10.9872 1.0625 -1.6477 14 7 10.9215 -0.6082 -0.3139 15 6 11.8695 -1.3211 -0.9982 16 1 12.1831 -0.9988 -1.9801 17 6 12.4275 -2.4580 -0.4297 18 7 12.0457 -2.8505 0.7671 19 14 13.7202 -3.4308 -1.3635 20 1 15.0694 -2.9057 -1.0330 21 1 13.6378 -4.8622 -0.9766 22 1 13.4812 -3.2981 -2.8230 23 6 9.7556 1.5759 0.1174 24 7 3.5238 -0.7230 -0.0065 25 7 2.3009 -1.1258 -0.0007 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.9561 2.1161 0.0004 30 1 6.0623 -0.0922 -0.0023 31 1 7.2039 2.3335 0.8862 32 1 7.2023 2.3331 -0.8938 33 1 8.5976 1.0933 -2.1914 34 1 8.6573 -0.6438 -1.6623 35 1 10.6397 -0.8978 0.5679 36 1 12.4358 -3.6447 1.1645 37 1 10.2177 1.4983 1.1016 38 1 9.6970 2.6026 -0.2440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086353798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:48 Heat of formation + Delta-G solvation = 66.386642 kcal Electronic energy + Delta-G solvation = -20664.325652 eV Core-core repulsion = 17351.026980 eV Total energy + Delta-G solvation = -3313.298672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.21867 -40.71339 -39.72108 -36.05177 -35.60117 -34.88903 -32.30154 -31.86224 -29.26915 -28.20458 -26.41479 -25.78555 -24.52223 -23.24464 -22.87195 -21.54164 -19.95306 -19.36879 -18.95014 -17.29117 -17.18571 -17.10830 -16.66752 -16.26720 -15.77356 -15.73214 -15.55199 -14.96534 -14.71051 -14.59891 -14.09459 -13.95263 -13.69591 -13.25439 -13.13444 -12.92166 -12.89861 -12.62501 -12.28093 -12.14557 -12.04679 -11.61567 -11.46899 -11.33862 -11.21133 -10.91202 -10.77320 -10.44015 -10.01090 -8.98647 -7.94365 -5.22613 0.15211 0.58741 1.18876 1.48005 1.49636 1.58064 2.14849 2.22256 2.56617 3.18774 3.38127 3.48731 3.74539 3.81265 3.84482 3.93257 3.98759 4.16608 4.34802 4.38145 4.44053 4.49395 4.68347 4.72859 4.77050 4.82694 4.95580 5.01619 5.13810 5.27421 5.37551 5.45630 5.48300 5.56148 5.68991 6.29430 6.40003 6.87596 7.10470 7.34045 8.12074 8.33868 9.29142 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025664 B = 0.002977 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.781728 B = 9404.034774 C =10207.693571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.351 5.351 3 C 0.112 3.888 4 C -0.130 4.130 5 C 0.604 3.396 6 O -0.568 6.568 7 N -0.709 5.709 8 C 0.140 3.860 9 C -0.106 4.106 10 H 0.076 0.924 11 C -0.156 4.156 12 C 0.143 3.857 13 H 0.061 0.939 14 N -0.721 5.721 15 C -0.241 4.241 16 H 0.077 0.923 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.973 3.027 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.270 1.270 23 C -0.130 4.130 24 N -0.232 5.232 25 N -0.096 5.096 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.132 0.868 29 H 0.242 0.758 30 H 0.410 0.590 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.374 0.626 36 H 0.251 0.749 37 H 0.058 0.942 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.584 11.370 -1.832 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.136 5.136 3 C -0.046 4.046 4 C -0.270 4.270 5 C 0.389 3.611 6 O -0.447 6.447 7 N -0.358 5.358 8 C 0.018 3.982 9 C -0.125 4.125 10 H 0.094 0.906 11 C -0.196 4.196 12 C 0.033 3.967 13 H 0.080 0.920 14 N -0.359 5.359 15 C -0.373 4.373 16 H 0.095 0.905 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.802 3.198 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.194 1.194 23 C -0.169 4.169 24 N -0.105 5.105 25 N -0.077 5.077 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.151 0.849 29 H 0.258 0.742 30 H 0.246 0.754 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.206 0.794 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.512 10.619 -1.982 27.705 hybrid contribution 0.634 -0.578 0.096 0.864 sum -24.878 10.041 -1.885 26.894 Atomic orbital electron populations 1.22745 0.69205 1.07861 1.06654 1.50775 1.10809 1.04568 1.47427 1.23889 0.88892 0.96389 0.95453 1.21570 0.95494 0.90258 1.19678 1.16930 0.82249 0.86138 0.75813 1.90768 1.87158 1.13842 1.52965 1.45909 1.05294 1.11515 1.73127 1.21422 0.81537 0.92741 1.02542 1.22510 0.93337 0.98344 0.98290 0.90556 1.23738 0.99219 1.00521 0.96139 1.21398 0.92466 0.87563 0.95234 0.92047 1.42324 1.46261 1.27910 1.19416 1.19680 1.13259 1.04716 0.99657 0.90494 1.25577 1.03173 1.00256 0.97955 1.69816 1.47860 1.27115 1.17301 0.85136 0.78990 0.77367 0.78258 1.21325 1.22356 1.19446 1.23322 0.94450 0.99310 0.99785 1.74643 1.13941 1.11196 1.10735 1.81942 0.93608 1.08131 1.24019 0.87340 0.87450 0.84949 0.74157 0.75417 0.90973 0.90501 0.88756 0.93902 0.79433 0.94047 0.92283 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 11.51 127.77 1.47 1.62 16 2 N -0.35 -4.96 4.03 -368.59 -1.49 -6.44 16 3 C 0.11 1.71 11.31 83.85 0.95 2.66 16 4 C -0.13 -3.11 6.99 40.82 0.29 -2.83 16 5 C 0.60 16.47 7.82 86.69 0.68 17.15 16 6 O -0.57 -17.29 16.86 -4.00 -0.07 -17.36 16 7 N -0.71 -19.18 5.55 -466.27 -2.59 -21.77 16 8 C 0.14 3.67 5.51 86.38 0.48 4.15 16 9 C -0.11 -3.20 3.64 -10.26 -0.04 -3.24 16 10 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 11 C -0.16 -5.22 7.43 31.12 0.23 -4.99 16 12 C 0.14 5.59 4.55 45.52 0.21 5.80 16 13 H 0.06 2.38 8.11 -2.39 -0.02 2.36 16 14 N -0.72 -36.64 5.31 -320.44 -1.70 -38.34 16 15 C -0.24 -13.55 9.97 84.04 0.84 -12.71 16 16 H 0.08 4.14 7.83 -2.92 -0.02 4.12 16 17 C -0.08 -4.51 5.50 84.87 0.47 -4.04 16 18 N -0.97 -60.20 13.06 21.66 0.28 -59.91 16 19 Si 0.97 46.76 29.55 68.60 2.03 48.78 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 23 C -0.13 -4.00 7.38 31.12 0.23 -3.77 16 24 N -0.23 -6.37 12.04 -49.99 -0.60 -6.97 16 25 N -0.10 -2.30 13.78 37.02 0.51 -1.79 16 26 H 0.11 -0.10 8.14 -2.39 -0.02 -0.11 16 27 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.13 -0.58 8.14 -2.39 -0.02 -0.60 16 29 H 0.24 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.41 11.30 8.16 -92.71 -0.76 10.55 16 31 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.08 1.93 7.84 -2.39 -0.02 1.91 16 33 H 0.09 2.68 7.90 -2.39 -0.02 2.66 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.37 20.39 7.90 -92.71 -0.73 19.66 16 36 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 38 H 0.11 2.72 8.10 -2.39 -0.02 2.70 16 Total: -1.00 -76.44 332.34 1.77 -74.68 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -0.40 Total: 29.33 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 5.79 Total: -0.20 kcal Atomic # 7 Polarization: -129.65 SS G_CDS: -5.59 Total: -135.23 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.07 Total: -17.36 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -76.44 1.77 -74.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086353798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.062 kcal (2) G-P(sol) polarization free energy of solvation -76.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds