Wall clock time and date at job start Fri Apr 10 2020 17:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28715 * 126.03824 * 2 1 4 4 N 1.28516 * 110.63892 * 180.30052 * 3 2 1 5 5 C 1.33323 * 109.43475 * 359.70658 * 4 3 2 6 6 C 1.36996 * 106.37542 * 0.02562 * 5 4 3 7 7 C 1.47237 * 127.18835 * 180.02562 * 6 5 4 8 8 O 1.21618 * 119.99965 * 184.82875 * 7 6 5 9 9 N 1.34774 * 119.99936 * 4.81913 * 7 6 5 10 10 C 1.46505 * 119.99868 * 174.49647 * 9 7 6 11 11 C 1.53003 * 109.47057 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.85192 * 43.80205 * 11 10 9 13 13 C 1.53778 * 113.61222 * 174.99838 * 11 10 9 14 14 C 1.53782 * 87.07850 * 140.06467 * 13 11 10 15 15 H 1.09002 * 113.61771 * 219.93273 * 14 13 11 16 16 N 1.46501 * 113.61729 * 89.11433 * 14 13 11 17 17 C 1.36933 * 120.00164 * 156.52573 * 16 14 13 18 18 H 1.08003 * 120.00162 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00024 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00491 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99889 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46604 * 269.99681 * 21 19 17 23 23 H 1.48500 * 109.47215 * 150.00155 * 21 19 17 24 24 H 1.48498 * 109.47322 * 29.99450 * 21 19 17 25 25 C 1.53778 * 87.17438 * 334.52591 * 14 13 11 26 26 H 1.09000 * 109.47343 * 271.34300 * 1 2 3 27 27 H 1.09000 * 109.47466 * 31.34274 * 1 2 3 28 28 H 1.08999 * 109.47218 * 151.34447 * 1 2 3 29 29 H 1.08001 * 126.80517 * 179.97438 * 5 4 3 30 30 H 0.97002 * 120.00381 * 354.49636 * 9 7 6 31 31 H 1.08998 * 109.46908 * 60.00139 * 10 9 7 32 32 H 1.08998 * 109.46823 * 300.00112 * 10 9 7 33 33 H 1.08999 * 113.61398 * 25.51616 * 13 11 10 34 34 H 1.09004 * 113.69173 * 254.62009 * 13 11 10 35 35 H 0.97000 * 120.00068 * 336.53495 * 16 14 13 36 36 H 0.96991 * 120.00342 * 180.02562 * 20 19 17 37 37 H 1.09001 * 113.61353 * 140.02656 * 25 14 13 38 38 H 1.09004 * 113.61059 * 270.92563 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6996 -0.0063 5 6 3.5551 -0.6304 -0.0044 6 6 2.2712 -1.1081 0.0031 7 6 1.8462 -2.5178 0.0084 8 8 0.6654 -2.7973 -0.0737 9 7 2.7657 -3.4985 0.1041 10 6 2.3379 -4.8940 0.2308 11 6 3.5686 -5.7984 0.3218 12 1 4.3358 -5.4037 0.9879 13 6 3.2294 -7.2759 0.5800 14 6 4.3487 -7.6252 -0.4151 15 1 4.1023 -8.4569 -1.0752 16 7 5.6664 -7.7659 0.2094 17 6 6.6366 -8.5156 -0.4003 18 1 6.4305 -9.0029 -1.3418 19 6 7.8850 -8.6493 0.1917 20 7 8.8178 -9.3695 -0.3945 21 14 8.2413 -7.8070 1.8206 22 1 8.7824 -6.4475 1.5668 23 1 9.2380 -8.6023 2.5816 24 1 6.9867 -7.7013 2.6081 25 6 4.1118 -6.2444 -1.0491 26 1 -0.3634 0.0241 1.0274 27 1 -0.3634 0.8777 -0.5345 28 1 -0.3633 -0.9018 -0.4928 29 1 4.4632 -1.2149 -0.0088 30 1 3.7108 -3.2804 0.0890 31 1 1.7452 -5.1728 -0.6404 32 1 1.7356 -5.0088 1.1320 33 1 2.2352 -7.5621 0.2370 34 1 3.4351 -7.6007 1.6000 35 1 5.8517 -7.3280 1.0549 36 1 9.6899 -9.4632 0.0194 37 1 5.0298 -5.7357 -1.3432 38 1 3.3583 -6.2491 -1.8368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086355367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:51 Heat of formation + Delta-G solvation = 99.552208 kcal Electronic energy + Delta-G solvation = -21027.136414 eV Core-core repulsion = 17715.275909 eV Total energy + Delta-G solvation = -3311.860505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.62997 -39.97344 -38.71548 -35.42909 -34.66120 -33.38436 -31.90494 -30.67075 -28.52589 -27.73879 -25.28438 -24.38417 -23.43056 -22.61009 -21.75311 -20.88864 -18.95319 -18.20702 -17.69886 -17.16736 -16.99769 -16.25660 -15.58044 -15.07675 -14.78402 -14.61991 -14.33377 -13.77761 -13.69583 -13.62388 -13.37860 -12.91615 -12.60102 -12.41330 -12.13369 -11.68619 -11.47833 -11.45320 -10.98148 -10.64278 -10.60597 -10.54656 -10.28414 -10.10151 -9.89649 -9.74902 -9.62637 -9.31920 -8.97846 -7.36959 -5.85022 -3.21913 0.57185 1.72855 1.96474 2.72765 2.80001 3.30431 3.32374 3.39565 3.95151 4.12329 4.37697 4.50780 4.61805 4.64431 4.77718 4.78745 4.95554 4.99822 5.23530 5.29886 5.32779 5.38173 5.57706 5.60789 5.71223 5.78016 5.98761 6.01526 6.04329 6.14435 6.38261 6.53684 6.61980 6.80114 7.05317 7.68457 7.92273 7.99316 8.34466 9.11928 9.83975 10.02659 11.33010 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.003388 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.016873 B = 8263.584041 C = 8990.686780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.256 5.256 3 N -0.061 5.061 4 N -0.272 5.272 5 C 0.004 3.996 6 C -0.071 4.071 7 C 0.594 3.406 8 O -0.540 6.540 9 N -0.704 5.704 10 C 0.133 3.867 11 C -0.125 4.125 12 H 0.092 0.908 13 C -0.147 4.147 14 C 0.172 3.828 15 H 0.071 0.929 16 N -0.730 5.730 17 C -0.249 4.249 18 H 0.092 0.908 19 C 0.006 3.994 20 N -0.931 5.931 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.167 4.167 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.200 0.800 30 H 0.407 0.593 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.362 0.638 36 H 0.261 0.739 37 H 0.070 0.930 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.107 15.711 1.869 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.052 5.052 3 N -0.042 5.042 4 N -0.135 5.135 5 C -0.157 4.157 6 C -0.205 4.205 7 C 0.378 3.622 8 O -0.418 6.418 9 N -0.355 5.355 10 C 0.010 3.990 11 C -0.144 4.144 12 H 0.110 0.890 13 C -0.187 4.187 14 C 0.061 3.939 15 H 0.089 0.911 16 N -0.370 5.370 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.190 4.190 20 N -0.578 5.578 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.208 4.208 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.137 0.863 29 H 0.217 0.783 30 H 0.242 0.758 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.195 0.805 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.792 16.849 1.677 24.561 hybrid contribution 0.737 -0.362 1.214 1.466 sum -17.055 16.486 2.891 23.896 Atomic orbital electron populations 1.22595 0.71365 1.06992 1.05684 1.47655 1.09917 1.03427 1.44226 1.78293 0.96763 1.11538 1.17609 1.74926 1.09061 1.12555 1.16934 1.23974 0.96783 0.92014 1.02920 1.21990 0.91567 0.90966 1.16015 1.16672 0.85846 0.82582 0.77081 1.90788 1.16732 1.83657 1.50582 1.45755 1.09712 1.06951 1.73097 1.21606 0.97363 0.77855 1.02171 1.22835 0.96262 0.94980 1.00309 0.88980 1.23446 1.00135 0.93805 1.01314 1.20994 0.85012 0.94666 0.93253 0.91112 1.42513 1.09673 1.60393 1.24447 1.19099 0.90708 1.23167 1.04867 0.89021 1.24689 0.96142 0.99790 0.98347 1.69692 1.04637 1.43706 1.39787 0.86571 0.77677 0.79489 0.84893 1.20971 1.21625 1.20340 1.23925 1.00657 1.01572 0.94661 0.88677 0.87907 0.86320 0.78300 0.75806 0.90731 0.91274 0.89901 0.91324 0.80510 0.92921 0.91098 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 11.00 59.85 0.66 1.14 16 2 N -0.26 -2.62 3.79 -64.12 -0.24 -2.86 16 3 N -0.06 -0.74 13.14 60.35 0.79 0.06 16 4 N -0.27 -3.40 12.35 30.47 0.38 -3.02 16 5 C 0.00 0.04 11.54 -17.35 -0.20 -0.16 16 6 C -0.07 -0.74 6.98 -82.33 -0.57 -1.31 16 7 C 0.59 6.44 7.80 -12.61 -0.10 6.34 16 8 O -0.54 -7.00 14.82 5.26 0.08 -6.92 16 9 N -0.70 -6.69 5.54 -61.44 -0.34 -7.03 16 10 C 0.13 1.37 5.52 -4.04 -0.02 1.35 16 11 C -0.13 -1.49 3.64 -89.67 -0.33 -1.82 16 12 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 13 C -0.15 -1.96 7.38 -25.92 -0.19 -2.15 16 14 C 0.17 2.97 4.55 -67.12 -0.31 2.67 16 15 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 16 N -0.73 -16.03 5.11 -52.64 -0.27 -16.30 16 17 C -0.25 -6.70 10.45 -15.06 -0.16 -6.86 16 18 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 20 N -0.93 -28.48 13.97 55.49 0.78 -27.70 16 21 Si 0.88 21.16 27.73 -169.99 -4.71 16.44 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 25 C -0.17 -2.36 7.45 -25.78 -0.19 -2.55 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.12 0.84 6.31 -51.93 -0.33 0.51 16 29 H 0.20 1.29 7.56 -52.49 -0.40 0.90 16 30 H 0.41 3.14 7.51 -40.82 -0.31 2.83 16 31 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.36 7.76 5.76 -40.82 -0.24 7.53 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.93 7.91 -51.93 -0.41 0.51 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -33.50 323.35 -5.23 -38.73 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.05 Total: 7.02 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.51 Total: -3.28 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 1.09 Total: -56.87 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.08 Total: -6.92 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.44 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.50 -5.23 -38.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086355367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.284 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds