Wall clock time and date at job start Fri Apr 10 2020 17:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28519 * 124.43986 * 2 1 4 4 C 1.31136 * 109.05674 * 179.97438 * 3 2 1 5 5 C 1.40929 * 105.77399 * 359.97438 * 4 3 2 6 6 C 1.47799 * 127.23407 * 180.02562 * 5 4 3 7 7 O 1.21564 * 119.99968 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00072 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00191 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47160 * 179.97438 * 9 8 6 11 11 H 1.08999 * 112.84830 * 316.19649 * 10 9 8 12 12 C 1.53782 * 113.61472 * 87.50173 * 10 9 8 13 13 C 1.53782 * 87.07970 * 139.97967 * 12 10 9 14 14 H 1.09002 * 113.61440 * 220.01637 * 13 12 10 15 15 N 1.46500 * 113.68697 * 89.12574 * 13 12 10 16 16 C 1.36940 * 119.99754 * 107.46672 * 15 13 12 17 17 H 1.08004 * 119.99847 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00253 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99663 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00154 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47129 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46821 * 120.00383 * 20 18 16 23 23 H 1.48505 * 109.47121 * 240.00241 * 20 18 16 24 24 C 1.53778 * 113.61373 * 184.99985 * 10 9 8 25 25 N 1.28588 * 124.44471 * 179.68961 * 2 1 3 26 26 H 1.08999 * 109.46871 * 90.02908 * 1 2 3 27 27 H 1.08994 * 109.46947 * 210.02616 * 1 2 3 28 28 H 1.08997 * 109.47271 * 330.03132 * 1 2 3 29 29 H 1.07996 * 127.11121 * 179.97438 * 4 3 2 30 30 H 0.96996 * 120.00173 * 359.97438 * 8 6 5 31 31 H 1.09001 * 109.47010 * 300.00218 * 9 8 6 32 32 H 1.09008 * 109.47241 * 59.99762 * 9 8 6 33 33 H 1.08992 * 113.61381 * 254.52773 * 12 10 9 34 34 H 1.09003 * 113.60980 * 25.43463 * 12 10 9 35 35 H 0.96996 * 120.00437 * 287.46105 * 15 13 12 36 36 H 0.97003 * 119.99596 * 179.97438 * 19 18 16 37 37 H 1.09002 * 113.61242 * 334.56761 * 24 10 9 38 38 H 1.09001 * 113.61606 * 105.38436 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4563 0.7121 0.0006 5 6 3.4659 -0.6972 0.0015 6 6 4.6487 -1.5834 0.0029 7 8 5.7664 -1.1054 0.0029 8 7 4.4881 -2.9216 0.0032 9 6 5.6605 -3.8001 0.0041 10 6 5.2037 -5.2603 0.0049 11 1 4.3852 -5.4473 0.7001 12 6 4.9615 -5.8308 -1.4025 13 6 5.6132 -7.1307 -0.9022 14 1 6.2692 -7.6004 -1.6351 15 7 4.6642 -8.0718 -0.3023 16 6 4.3172 -9.2147 -0.9722 17 1 4.7429 -9.4219 -1.9429 18 6 3.4184 -10.1068 -0.4036 19 7 2.8993 -9.8539 0.7792 20 14 2.9446 -11.6654 -1.3178 21 1 3.6612 -11.7142 -2.6175 22 1 3.3169 -12.8497 -0.5029 23 1 1.4793 -11.6715 -1.5593 24 6 6.3593 -6.2672 0.1286 25 7 2.1924 -1.0604 0.0057 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5133 29 1 4.3130 1.3696 0.0003 30 1 3.5963 -3.3031 0.0029 31 1 6.2599 -3.6070 -0.8856 32 1 6.2590 -3.6065 0.8944 33 1 3.9065 -5.9399 -1.6538 34 1 5.5335 -5.3275 -2.1820 35 1 4.2817 -7.8856 0.5694 36 1 2.2710 -10.4771 1.1763 37 1 7.3135 -5.8832 -0.2323 38 1 6.4338 -6.7276 1.1138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086504849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:55 Heat of formation + Delta-G solvation = 106.133397 kcal Electronic energy + Delta-G solvation = -20774.879001 eV Core-core repulsion = 17463.303878 eV Total energy + Delta-G solvation = -3311.575123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.89924 -39.66462 -38.43679 -34.72705 -34.09557 -33.30116 -32.79984 -30.21174 -28.62481 -27.26072 -25.05576 -24.33143 -23.45910 -22.35347 -21.67644 -20.54008 -18.54154 -17.96459 -17.30977 -17.27285 -16.97004 -15.91276 -15.31974 -15.05983 -14.87616 -14.35668 -14.14510 -13.64840 -13.54783 -13.29243 -13.14445 -12.90655 -12.28765 -12.17118 -11.91370 -11.40698 -11.29078 -11.04847 -10.87104 -10.71171 -10.51749 -10.39026 -10.13862 -9.87394 -9.72020 -9.70099 -9.48614 -9.01709 -8.89377 -7.00793 -5.81801 -3.10722 1.09304 1.70571 1.87417 3.06130 3.15833 3.40665 3.46743 3.48802 3.68680 4.52809 4.54934 4.59899 4.69962 4.87068 4.88638 5.05645 5.08992 5.24153 5.41543 5.44809 5.62744 5.68084 5.72352 5.86436 5.95166 6.10017 6.21315 6.21899 6.36750 6.38245 6.59053 6.75455 6.89741 7.04682 7.41609 7.68712 7.85506 8.08983 8.37469 9.48212 10.05959 10.40114 11.40715 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.003207 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.321144 B = 8728.928520 C = 9770.248015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.144 5.144 3 N -0.293 5.293 4 C 0.034 3.966 5 C -0.045 4.045 6 C 0.606 3.394 7 O -0.533 6.533 8 N -0.707 5.707 9 C 0.130 3.870 10 C -0.120 4.120 11 H 0.094 0.906 12 C -0.169 4.169 13 C 0.167 3.833 14 H 0.062 0.938 15 N -0.706 5.706 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.147 4.147 25 N -0.247 5.247 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.208 0.792 30 H 0.409 0.591 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.078 0.922 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 20.257 -1.012 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.047 5.047 3 N -0.133 5.133 4 C -0.149 4.149 5 C -0.208 4.208 6 C 0.389 3.611 7 O -0.409 6.409 8 N -0.357 5.357 9 C 0.007 3.993 10 C -0.139 4.139 11 H 0.112 0.888 12 C -0.210 4.210 13 C 0.055 3.945 14 H 0.081 0.919 15 N -0.345 5.345 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.187 4.187 25 N -0.096 5.096 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.225 0.775 30 H 0.244 0.756 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.818 20.386 -1.121 20.610 hybrid contribution -0.176 -0.861 -0.133 0.888 sum -2.994 19.525 -1.254 19.793 Atomic orbital electron populations 1.22281 0.69550 1.06347 1.05478 1.48063 1.09307 0.99210 1.48104 1.74014 1.03889 1.15532 1.19850 1.24850 0.94258 0.93686 1.02156 1.23142 0.91380 0.94902 1.11400 1.16633 0.85868 0.81735 0.76892 1.90808 1.23759 1.75497 1.50789 1.45933 1.11481 1.05054 1.73242 1.21582 0.86913 0.88672 1.02090 1.22722 1.00101 0.91145 0.99929 0.88805 1.23897 1.02068 1.00542 0.94486 1.21054 0.91163 0.88537 0.93748 0.91941 1.42183 1.49843 1.21126 1.21320 1.19342 1.20442 0.96823 1.00616 0.90934 1.24764 0.99990 0.99180 0.96989 1.69674 1.34318 1.37599 1.16461 0.86101 0.77934 0.83266 0.78798 1.20483 1.21837 1.21859 1.23445 0.96628 0.97138 1.01471 1.74422 1.03063 1.15673 1.16404 0.88734 0.87377 0.87576 0.77494 0.75553 0.91158 0.91400 0.91490 0.91331 0.78104 0.93507 0.90377 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.55 59.85 0.69 1.19 16 2 N -0.14 -1.45 4.35 -16.63 -0.07 -1.52 16 3 N -0.29 -3.21 12.01 30.90 0.37 -2.84 16 4 C 0.03 0.38 12.04 -16.83 -0.20 0.18 16 5 C -0.05 -0.57 7.21 -82.68 -0.60 -1.17 16 6 C 0.61 8.52 7.83 -12.35 -0.10 8.42 16 7 O -0.53 -8.71 16.95 5.31 0.09 -8.62 16 8 N -0.71 -9.31 5.55 -61.26 -0.34 -9.65 16 9 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 10 C -0.12 -1.79 3.63 -89.81 -0.33 -2.12 16 11 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 12 C -0.17 -2.80 7.43 -25.92 -0.19 -2.99 16 13 C 0.17 3.23 4.56 -67.12 -0.31 2.92 16 14 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 15 N -0.71 -17.29 5.31 -52.63 -0.28 -17.57 16 16 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 20 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 C -0.15 -2.32 7.39 -25.92 -0.19 -2.51 16 25 N -0.25 -2.96 11.84 33.42 0.40 -2.57 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.21 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.41 5.13 8.24 -40.82 -0.34 4.79 16 31 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 32 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 35 H 0.38 9.96 7.90 -40.82 -0.32 9.64 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -33.29 331.84 -5.87 -39.15 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.25 Total: 10.11 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.49 Total: -1.58 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.80 Total: -61.12 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.29 -5.87 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086504849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.287 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds