Wall clock time and date at job start Fri Apr 10 2020 17:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28519 * 124.43986 * 2 1 4 4 C 1.31136 * 109.05674 * 179.97438 * 3 2 1 5 5 C 1.40929 * 105.77399 * 359.97438 * 4 3 2 6 6 C 1.47799 * 127.23407 * 180.02562 * 5 4 3 7 7 O 1.21564 * 119.99968 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00072 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00191 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47160 * 179.97438 * 9 8 6 11 11 H 1.08999 * 112.84830 * 316.19649 * 10 9 8 12 12 C 1.53782 * 113.61472 * 87.50173 * 10 9 8 13 13 C 1.53782 * 87.07970 * 139.97967 * 12 10 9 14 14 H 1.09002 * 113.61440 * 220.01637 * 13 12 10 15 15 N 1.46500 * 113.68697 * 89.12574 * 13 12 10 16 16 C 1.36940 * 119.99754 * 107.46672 * 15 13 12 17 17 H 1.08004 * 119.99847 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00253 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99663 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00154 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47129 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46821 * 120.00383 * 20 18 16 23 23 H 1.48505 * 109.47121 * 240.00241 * 20 18 16 24 24 C 1.53778 * 113.61373 * 184.99985 * 10 9 8 25 25 N 1.28588 * 124.44471 * 179.68961 * 2 1 3 26 26 H 1.08999 * 109.46871 * 90.02908 * 1 2 3 27 27 H 1.08994 * 109.46947 * 210.02616 * 1 2 3 28 28 H 1.08997 * 109.47271 * 330.03132 * 1 2 3 29 29 H 1.07996 * 127.11121 * 179.97438 * 4 3 2 30 30 H 0.96996 * 120.00173 * 359.97438 * 8 6 5 31 31 H 1.09001 * 109.47010 * 300.00218 * 9 8 6 32 32 H 1.09008 * 109.47241 * 59.99762 * 9 8 6 33 33 H 1.08992 * 113.61381 * 254.52773 * 12 10 9 34 34 H 1.09003 * 113.60980 * 25.43463 * 12 10 9 35 35 H 0.96996 * 120.00437 * 287.46105 * 15 13 12 36 36 H 0.97003 * 119.99596 * 179.97438 * 19 18 16 37 37 H 1.09002 * 113.61242 * 334.56761 * 24 10 9 38 38 H 1.09001 * 113.61606 * 105.38436 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4563 0.7121 0.0006 5 6 3.4659 -0.6972 0.0015 6 6 4.6487 -1.5834 0.0029 7 8 5.7664 -1.1054 0.0029 8 7 4.4881 -2.9216 0.0032 9 6 5.6605 -3.8001 0.0041 10 6 5.2037 -5.2603 0.0049 11 1 4.3852 -5.4473 0.7001 12 6 4.9615 -5.8308 -1.4025 13 6 5.6132 -7.1307 -0.9022 14 1 6.2692 -7.6004 -1.6351 15 7 4.6642 -8.0718 -0.3023 16 6 4.3172 -9.2147 -0.9722 17 1 4.7429 -9.4219 -1.9429 18 6 3.4184 -10.1068 -0.4036 19 7 2.8993 -9.8539 0.7792 20 14 2.9446 -11.6654 -1.3178 21 1 3.6612 -11.7142 -2.6175 22 1 3.3169 -12.8497 -0.5029 23 1 1.4793 -11.6715 -1.5593 24 6 6.3593 -6.2672 0.1286 25 7 2.1924 -1.0604 0.0057 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5133 29 1 4.3130 1.3696 0.0003 30 1 3.5963 -3.3031 0.0029 31 1 6.2599 -3.6070 -0.8856 32 1 6.2590 -3.6065 0.8944 33 1 3.9065 -5.9399 -1.6538 34 1 5.5335 -5.3275 -2.1820 35 1 4.2817 -7.8856 0.5694 36 1 2.2710 -10.4771 1.1763 37 1 7.3135 -5.8832 -0.2323 38 1 6.4338 -6.7276 1.1138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086504849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:55 Heat of formation + Delta-G solvation = 81.095836 kcal Electronic energy + Delta-G solvation = -20775.964711 eV Core-core repulsion = 17463.303878 eV Total energy + Delta-G solvation = -3312.660833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.72284 -40.82919 -39.78566 -36.06306 -35.04844 -34.76206 -33.74429 -32.05614 -29.54272 -28.33150 -26.41506 -25.86391 -24.86853 -23.13479 -23.00206 -21.56972 -19.90067 -19.36862 -18.82395 -18.05463 -17.91782 -17.06846 -16.66587 -16.38022 -15.86803 -15.75053 -15.67451 -15.00401 -14.73072 -14.58312 -13.91325 -13.71007 -13.66331 -13.27125 -13.05094 -12.94038 -12.91012 -12.64685 -12.15075 -12.12266 -12.04030 -11.67539 -11.57753 -11.47520 -11.27588 -10.92018 -10.79363 -10.53759 -10.08916 -8.98946 -7.94819 -5.22952 0.17545 0.85781 1.24225 1.48546 1.48870 1.59028 2.06241 2.13198 2.56363 2.86135 3.38039 3.67338 3.75035 3.80199 3.90377 4.01150 4.16199 4.28374 4.30015 4.34765 4.42686 4.48044 4.65963 4.74172 4.77613 4.92129 4.95721 5.01443 5.12800 5.24176 5.36616 5.46899 5.50282 5.55260 5.68149 6.29212 6.36296 6.96276 7.07126 7.34065 8.11607 8.33623 9.28721 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.003207 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.321144 B = 8728.928520 C = 9770.248015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.136 5.136 3 N -0.299 5.299 4 C 0.031 3.969 5 C -0.068 4.068 6 C 0.609 3.391 7 O -0.560 6.560 8 N -0.704 5.704 9 C 0.139 3.861 10 C -0.104 4.104 11 H 0.079 0.921 12 C -0.155 4.155 13 C 0.143 3.857 14 H 0.061 0.939 15 N -0.721 5.721 16 C -0.241 4.241 17 H 0.077 0.923 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.294 1.294 23 H -0.294 1.294 24 C -0.132 4.132 25 N -0.257 5.257 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.226 0.774 30 H 0.412 0.588 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.374 0.626 36 H 0.251 0.749 37 H 0.109 0.891 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 21.345 -1.873 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.040 5.040 3 N -0.139 5.139 4 C -0.152 4.152 5 C -0.229 4.229 6 C 0.392 3.608 7 O -0.437 6.437 8 N -0.354 5.354 9 C 0.016 3.984 10 C -0.123 4.123 11 H 0.097 0.903 12 C -0.195 4.195 13 C 0.033 3.967 14 H 0.079 0.921 15 N -0.359 5.359 16 C -0.373 4.373 17 H 0.095 0.905 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.801 3.199 21 H -0.190 1.190 22 H -0.222 1.222 23 H -0.221 1.221 24 C -0.171 4.171 25 N -0.107 5.107 26 H 0.130 0.870 27 H 0.138 0.862 28 H 0.146 0.854 29 H 0.243 0.757 30 H 0.248 0.752 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.206 0.794 36 H 0.059 0.941 37 H 0.128 0.872 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.732 21.500 -2.017 21.767 hybrid contribution -0.231 -1.125 0.103 1.153 sum -2.963 20.375 -1.914 20.678 Atomic orbital electron populations 1.22791 0.66923 1.08056 1.07207 1.48629 1.10690 0.98532 1.46192 1.74023 1.03908 1.15828 1.20141 1.25195 0.94986 0.93391 1.01581 1.22990 0.91285 0.95350 1.13316 1.16752 0.85964 0.81837 0.76200 1.90785 1.24821 1.75927 1.52184 1.45900 1.11584 1.04978 1.72935 1.21464 0.86947 0.87339 1.02664 1.22503 0.99274 0.92180 0.98345 0.90282 1.23737 1.00785 0.98927 0.96100 1.21392 0.91200 0.88901 0.95170 0.92083 1.42327 1.50965 1.21590 1.21015 1.19714 1.19468 0.97462 1.00610 0.90539 1.25545 1.00803 1.02415 0.98019 1.69821 1.35414 1.38669 1.18085 0.85090 0.77279 0.79442 0.78060 1.19032 1.22160 1.22121 1.23343 0.97905 0.96008 0.99856 1.74382 1.03077 1.16570 1.16691 0.86951 0.86208 0.85439 0.75739 0.75225 0.90462 0.90925 0.93625 0.88805 0.79376 0.94052 0.87242 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 11.55 127.77 1.48 2.13 16 2 N -0.14 -2.52 4.35 -206.54 -0.90 -3.41 16 3 N -0.30 -6.08 12.01 -56.16 -0.67 -6.76 16 4 C 0.03 0.66 12.04 85.46 1.03 1.69 16 5 C -0.07 -1.67 7.21 42.24 0.30 -1.37 16 6 C 0.61 16.58 7.83 86.77 0.68 17.26 16 7 O -0.56 -17.78 16.95 -3.92 -0.07 -17.85 16 8 N -0.70 -17.79 5.55 -466.00 -2.59 -20.37 16 9 C 0.14 3.45 5.51 86.38 0.48 3.93 16 10 C -0.10 -2.97 3.63 -10.27 -0.04 -3.01 16 11 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 12 C -0.15 -4.93 7.43 31.12 0.23 -4.70 16 13 C 0.14 5.41 4.56 45.52 0.21 5.62 16 14 H 0.06 2.30 8.10 -2.39 -0.02 2.28 16 15 N -0.72 -35.59 5.31 -320.44 -1.70 -37.30 16 16 C -0.24 -13.20 9.97 84.03 0.84 -12.36 16 17 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 18 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 19 N -0.97 -58.64 13.06 21.65 0.28 -58.36 16 20 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 C -0.13 -3.94 7.39 31.12 0.23 -3.71 16 25 N -0.26 -5.89 11.84 -48.17 -0.57 -6.46 16 26 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.23 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.41 10.02 8.24 -92.71 -0.76 9.26 16 31 H 0.08 1.87 7.84 -2.39 -0.02 1.85 16 32 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 2.53 7.90 -2.39 -0.02 2.51 16 35 H 0.37 19.80 7.90 -92.71 -0.73 19.07 16 36 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.11 2.62 8.10 -2.39 -0.02 2.60 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -71.35 331.84 1.31 -70.04 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.40 Total: 31.10 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 5.90 Total: 1.66 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -6.15 Total: -132.66 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.07 Total: -17.85 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.35 1.31 -70.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086504849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.138 kcal (2) G-P(sol) polarization free energy of solvation -71.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds