Wall clock time and date at job start Fri Apr 10 2020 17:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99626 * 2 1 4 4 C 1.54323 * 109.88207 * 238.90395 * 2 1 3 5 5 H 1.08995 * 110.72104 * 336.74758 * 4 2 1 6 6 N 1.46502 * 110.87378 * 99.95435 * 4 2 1 7 7 C 1.34775 * 120.00107 * 200.06220 * 6 4 2 8 8 O 1.21592 * 119.99841 * 0.02562 * 7 6 4 9 9 C 1.47525 * 120.00044 * 180.02562 * 7 6 4 10 10 C 1.36587 * 125.76888 * 179.71834 * 9 7 6 11 11 N 1.34813 * 106.83695 * 179.89860 * 10 9 7 12 12 C 1.46503 * 126.59370 * 180.10710 * 11 10 9 13 13 N 1.40210 * 106.81338 * 0.35296 * 11 10 9 14 14 N 1.28766 * 108.36537 * 359.77734 * 13 11 10 15 15 C 1.55159 * 102.94045 * 218.38980 * 4 2 1 16 16 C 1.54903 * 101.58460 * 35.50011 * 15 4 2 17 17 N 1.47024 * 109.88206 * 121.09282 * 2 1 3 18 18 C 1.36937 * 125.65056 * 298.62266 * 17 2 1 19 19 H 1.08002 * 119.99903 * 341.19389 * 18 17 2 20 20 C 1.38812 * 119.99917 * 161.18516 * 18 17 2 21 21 N 1.31620 * 119.99793 * 157.54413 * 20 18 17 22 22 Si 1.86799 * 120.00197 * 337.54912 * 20 18 17 23 23 H 1.48500 * 109.47046 * 84.53559 * 22 20 18 24 24 H 1.48499 * 109.47121 * 204.53520 * 22 20 18 25 25 H 1.48503 * 109.46914 * 324.53527 * 22 20 18 26 26 H 1.09004 * 109.47049 * 300.35488 * 1 2 3 27 27 H 1.08992 * 109.47398 * 60.35879 * 1 2 3 28 28 H 1.09007 * 109.46846 * 180.35991 * 1 2 3 29 29 H 0.97001 * 119.99625 * 20.06736 * 6 4 2 30 30 H 1.07995 * 126.58409 * 0.03593 * 10 9 7 31 31 H 1.08996 * 109.47216 * 270.27192 * 12 11 10 32 32 H 1.08997 * 109.47012 * 30.27437 * 12 11 10 33 33 H 1.09003 * 109.47189 * 150.26923 * 12 11 10 34 34 H 1.09007 * 111.00627 * 277.42435 * 15 4 2 35 35 H 1.09004 * 111.03511 * 153.59445 * 15 4 2 36 36 H 1.09002 * 110.36954 * 204.15307 * 16 15 4 37 37 H 1.09004 * 110.36658 * 81.82598 * 16 15 4 38 38 H 0.96998 * 119.99831 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4549 0.1930 -2.2905 7 6 2.5529 -0.2223 -3.5689 8 8 2.3089 -1.3792 -3.8527 9 6 2.9563 0.7267 -4.6239 10 6 3.0980 0.4331 -5.9503 11 7 3.4747 1.5725 -6.5644 12 6 3.7447 1.7461 -7.9939 13 7 3.5641 2.5581 -5.5712 14 7 3.2521 2.0250 -4.4414 15 6 3.2876 -1.5142 -0.6923 16 6 2.8146 -1.8794 0.7368 17 7 2.0300 -0.7140 1.1840 18 6 1.8002 -0.3588 2.4863 19 1 1.4813 0.6453 2.7240 20 6 1.9769 -1.2894 3.5011 21 7 2.1949 -0.8847 4.7344 22 14 1.9053 -3.1159 3.1162 23 1 3.2364 -3.5748 2.6442 24 1 1.5292 -3.8656 4.3417 25 1 0.8935 -3.3593 2.0569 26 1 -0.3633 0.5194 0.8868 27 1 -0.3634 0.5082 -0.8931 28 1 -0.3633 -1.0277 0.0065 29 1 2.6493 1.1160 -2.0641 30 1 2.9368 -0.5270 -6.4178 31 1 4.7970 1.5429 -8.1922 32 1 3.1268 1.0548 -8.5669 33 1 3.5109 2.7699 -8.2861 34 1 4.1655 -0.8688 -0.6604 35 1 3.4858 -2.4110 -1.2794 36 1 3.6717 -2.0337 1.3923 37 1 2.1886 -2.7714 0.7129 38 1 2.3188 -1.5350 5.4434 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088551740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:11:00 Heat of formation + Delta-G solvation = 94.181184 kcal Electronic energy + Delta-G solvation = -21646.543490 eV Core-core repulsion = 18334.450080 eV Total energy + Delta-G solvation = -3312.093410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.42067 -39.59555 -37.75817 -35.00117 -34.06927 -32.11316 -31.20018 -30.65936 -29.35885 -28.13378 -25.23965 -23.93409 -23.34700 -22.47875 -21.20204 -20.32771 -19.72546 -18.07402 -16.87181 -16.53710 -16.32224 -16.08737 -15.00813 -14.94330 -14.74233 -14.54457 -13.95186 -13.67529 -13.50651 -13.32349 -12.94106 -12.73213 -12.38757 -12.09028 -11.82958 -11.56346 -11.49959 -11.15650 -10.86012 -10.73412 -10.69482 -10.40856 -10.19846 -9.96241 -9.93173 -9.54819 -9.40171 -8.80037 -8.62137 -7.04381 -5.91248 -3.21907 0.86958 1.55908 1.73439 3.17955 3.27613 3.39355 3.52689 3.55193 4.00735 4.02837 4.50154 4.52025 4.58838 4.72723 4.79220 4.97598 5.07961 5.18556 5.28335 5.37558 5.54273 5.65744 5.91134 5.98959 6.00743 6.09784 6.22572 6.34239 6.45607 6.49510 6.66758 6.78464 6.84410 7.02032 7.51737 7.73910 7.78171 8.24537 8.34825 8.86193 9.72028 10.19714 11.24772 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.040841 B = 0.003716 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.428320 B = 7533.606937 C = 7773.472530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.049 0.951 4 C 0.135 3.865 5 H 0.097 0.903 6 N -0.698 5.698 7 C 0.604 3.396 8 O -0.542 6.542 9 C -0.097 4.097 10 C 0.091 3.909 11 N -0.367 5.367 12 C 0.088 3.912 13 N -0.067 5.067 14 N -0.202 5.202 15 C -0.140 4.140 16 C 0.112 3.888 17 N -0.601 5.601 18 C -0.237 4.237 19 H 0.093 0.907 20 C 0.022 3.978 21 N -0.909 5.909 22 Si 0.881 3.119 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.276 1.276 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.408 0.592 30 H 0.205 0.795 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 3.208 -26.014 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.067 0.933 4 C 0.030 3.970 5 H 0.115 0.885 6 N -0.348 5.348 7 C 0.387 3.613 8 O -0.419 6.419 9 C -0.236 4.236 10 C -0.066 4.066 11 N -0.152 5.152 12 C -0.053 4.053 13 N -0.047 5.047 14 N -0.076 5.076 15 C -0.180 4.180 16 C -0.014 4.014 17 N -0.327 5.327 18 C -0.363 4.363 19 H 0.111 0.889 20 C -0.176 4.176 21 N -0.553 5.553 22 Si 0.711 3.289 23 H -0.212 1.212 24 H -0.231 1.231 25 H -0.201 1.201 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.244 0.756 30 H 0.222 0.778 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.608 3.849 -25.679 26.097 hybrid contribution -0.169 -1.677 -0.413 1.736 sum 2.439 2.172 -26.092 26.295 Atomic orbital electron populations 1.22206 0.97110 1.01516 1.00657 1.21087 0.92911 0.95411 0.85822 0.93343 1.22179 0.97136 0.91012 0.86654 0.88457 1.45828 1.67958 1.14676 1.06315 1.16719 0.77215 0.85787 0.81559 1.90802 1.51180 1.17578 1.82300 1.21571 1.15183 0.92600 0.94283 1.23375 0.96956 0.93019 0.93203 1.50388 1.46415 1.07991 1.10364 1.22190 1.03620 1.05698 0.73801 1.82020 1.22318 1.10879 0.89526 1.74660 1.08603 1.06834 1.17472 1.23143 0.97622 1.00170 0.97033 1.21960 0.95245 0.91093 0.93080 1.44829 1.57468 1.28946 1.01460 1.18588 1.42371 0.96752 0.78639 0.88950 1.24987 1.00165 0.97644 0.94813 1.69839 1.50937 1.33896 1.00593 0.87008 0.78278 0.87477 0.76125 1.21181 1.23140 1.20137 0.91907 0.93988 0.93039 0.75581 0.77788 0.89210 0.88386 0.88066 0.90837 0.91108 0.91925 0.95481 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.14 37.16 0.34 -2.53 16 2 C 0.15 3.02 3.48 -66.95 -0.23 2.79 16 3 H 0.05 0.93 7.70 -51.93 -0.40 0.53 16 4 C 0.13 2.33 2.76 -66.09 -0.18 2.15 16 5 H 0.10 1.74 7.40 -51.93 -0.38 1.36 16 6 N -0.70 -10.43 5.20 -53.07 -0.28 -10.71 16 7 C 0.60 8.92 7.82 -12.48 -0.10 8.82 16 8 O -0.54 -9.17 16.59 5.28 0.09 -9.09 16 9 C -0.10 -1.22 6.99 -83.55 -0.58 -1.80 16 10 C 0.09 0.82 11.31 -16.84 -0.19 0.63 16 11 N -0.37 -2.97 4.03 -67.86 -0.27 -3.25 16 12 C 0.09 0.23 11.51 59.85 0.69 0.92 16 13 N -0.07 -0.79 13.78 60.35 0.83 0.04 16 14 N -0.20 -2.70 12.04 32.85 0.40 -2.30 16 15 C -0.14 -2.54 6.77 -24.58 -0.17 -2.70 16 16 C 0.11 2.47 4.69 -2.53 -0.01 2.46 16 17 N -0.60 -14.38 2.94 -162.57 -0.48 -14.86 16 18 C -0.24 -6.63 10.16 -15.06 -0.15 -6.78 16 19 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 20 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 21 N -0.91 -28.10 13.97 55.49 0.78 -27.33 16 22 Si 0.88 22.78 24.27 -169.99 -4.13 18.65 16 23 H -0.28 -7.10 6.49 56.52 0.37 -6.74 16 24 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 25 H -0.28 -7.04 6.66 56.52 0.38 -6.66 16 26 H 0.06 1.23 8.02 -51.93 -0.42 0.81 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.41 5.67 8.01 -40.82 -0.33 5.35 16 30 H 0.21 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.47 6.67 -51.93 -0.35 1.12 16 37 H 0.03 0.63 5.56 -51.93 -0.29 0.34 16 38 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -34.93 317.91 -4.12 -39.05 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.16 Total: 0.49 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -0.68 Total: 4.51 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.97 Total: -58.41 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.13 Total: 18.65 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.93 -4.12 -39.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088551740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.231 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds