Wall clock time and date at job start Fri Apr 10 2020 17:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.00177 * 2 1 4 4 C 1.54326 * 109.88516 * 238.89953 * 2 1 3 5 5 H 1.09007 * 110.87011 * 336.82663 * 4 2 1 6 6 N 1.46495 * 110.72018 * 100.02911 * 4 2 1 7 7 C 1.34775 * 120.00040 * 199.98281 * 6 4 2 8 8 O 1.21280 * 119.99917 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.99850 * 179.97438 * 7 6 4 10 10 N 1.46500 * 109.46856 * 179.97438 * 9 7 6 11 11 N 1.28606 * 124.62009 * 269.69791 * 10 9 7 12 12 C 1.31378 * 108.71572 * 180.26679 * 11 10 9 13 13 C 1.39671 * 105.90381 * 0.02562 * 12 11 10 14 14 N 1.28604 * 124.62059 * 90.00251 * 10 9 7 15 15 C 1.55151 * 102.94503 * 218.39221 * 4 2 1 16 16 C 1.54916 * 101.58159 * 35.50125 * 15 4 2 17 17 N 1.47029 * 109.88076 * 121.09133 * 2 1 3 18 18 C 1.36931 * 125.65217 * 298.39402 * 17 2 1 19 19 H 1.08011 * 119.99631 * 359.97438 * 18 17 2 20 20 C 1.38808 * 120.00166 * 179.97438 * 18 17 2 21 21 N 1.31613 * 120.00366 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99824 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46876 * 90.00559 * 22 20 18 24 24 H 1.48498 * 109.47429 * 209.99976 * 22 20 18 25 25 H 1.48497 * 109.47497 * 330.00592 * 22 20 18 26 26 H 1.08994 * 109.47032 * 181.09865 * 1 2 3 27 27 H 1.08998 * 109.46953 * 301.10041 * 1 2 3 28 28 H 1.09000 * 109.46532 * 61.09447 * 1 2 3 29 29 H 0.97003 * 120.00018 * 19.97573 * 6 4 2 30 30 H 1.08997 * 109.47108 * 60.00249 * 9 7 6 31 31 H 1.08998 * 109.47267 * 299.99463 * 9 7 6 32 32 H 1.08004 * 127.04592 * 179.97438 * 12 11 10 33 33 H 1.08006 * 127.04687 * 180.02562 * 13 12 11 34 34 H 1.08999 * 111.00654 * 153.57052 * 15 4 2 35 35 H 1.09006 * 111.00715 * 277.38901 * 15 4 2 36 36 H 1.09001 * 110.36508 * 81.82805 * 16 15 4 37 37 H 1.09002 * 110.36579 * 204.04532 * 16 15 4 38 38 H 0.96996 * 120.00744 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 1.3064 -1.4460 -1.6210 6 7 2.4556 0.1959 -2.2874 7 6 2.5560 -0.2162 -3.5667 8 8 2.3150 -1.3699 -3.8529 9 6 2.9676 0.7566 -4.6416 10 7 3.0025 0.0693 -5.9349 11 7 4.0368 -0.5204 -6.4212 12 6 3.7226 -1.0242 -7.5932 13 6 2.3819 -0.6948 -7.8044 14 7 2.0047 -0.0219 -6.7410 15 6 3.2876 -1.5143 -0.6923 16 6 2.8144 -1.8794 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8038 -0.3563 2.4863 19 1 1.2127 0.5193 2.7109 20 6 2.3342 -1.1190 3.5177 21 7 3.0550 -2.1857 3.2440 22 14 2.0262 -0.6305 5.2942 23 1 0.7858 -1.2868 5.7801 24 1 3.1744 -1.0606 6.1321 25 1 1.8735 0.8439 5.3829 26 1 -0.3633 -1.0274 0.0197 27 1 -0.3633 0.5308 0.8799 28 1 -0.3632 0.4968 -0.8997 29 1 2.6486 1.1185 -2.0585 30 1 3.9574 1.1521 -4.4139 31 1 2.2499 1.5758 -4.6844 32 1 4.3689 -1.5787 -8.2574 33 1 1.7785 -0.9434 -8.6651 34 1 3.4851 -2.4112 -1.2794 35 1 4.1657 -0.8691 -0.6609 36 1 2.1885 -2.7715 0.7130 37 1 3.6716 -2.0357 1.3920 38 1 3.4260 -2.7184 3.9647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088594676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:11:04 Heat of formation + Delta-G solvation = 83.182293 kcal Electronic energy + Delta-G solvation = -21672.692823 eV Core-core repulsion = 18360.122465 eV Total energy + Delta-G solvation = -3312.570358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.44787 -41.10146 -39.25494 -35.70927 -34.75785 -33.84181 -33.35429 -32.09523 -30.76554 -29.20136 -26.41011 -25.82003 -23.78201 -23.29447 -22.15830 -21.67274 -21.24974 -18.88351 -18.68023 -18.47611 -17.37869 -16.74531 -16.65931 -16.50850 -15.82100 -15.65239 -15.50380 -15.11252 -14.78493 -14.38750 -14.03157 -13.89416 -13.36577 -13.25670 -12.94708 -12.76819 -12.62495 -12.54125 -12.26769 -12.14821 -11.98106 -11.76293 -11.58997 -11.50651 -11.35650 -11.29846 -10.74533 -10.23282 -10.14644 -8.91567 -7.75558 -5.20913 0.76417 1.28095 1.39504 1.48686 1.50031 1.58531 1.65069 2.10552 2.51687 3.34401 3.35247 3.43641 3.65342 3.81701 3.90891 4.02413 4.06412 4.16697 4.20824 4.47593 4.59572 4.60949 4.63883 4.78044 4.90532 5.01352 5.08694 5.10098 5.32477 5.37672 5.48594 5.55473 5.57800 5.69843 5.78342 6.29010 6.41004 7.08169 7.09983 7.39789 7.77945 8.41235 9.26553 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.048832 B = 0.003375 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.255520 B = 8295.334127 C = 8556.867324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.152 3.848 3 H 0.062 0.938 4 C 0.155 3.845 5 H 0.074 0.926 6 N -0.693 5.693 7 C 0.501 3.499 8 O -0.577 6.577 9 C 0.123 3.877 10 N -0.158 5.158 11 N -0.314 5.314 12 C -0.027 4.027 13 C -0.026 4.026 14 N -0.312 5.312 15 C -0.138 4.138 16 C 0.158 3.842 17 N -0.614 5.614 18 C -0.226 4.226 19 H 0.088 0.912 20 C -0.070 4.070 21 N -0.952 5.952 22 Si 0.978 3.022 23 H -0.291 1.291 24 H -0.297 1.297 25 H -0.265 1.265 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.422 0.578 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.230 0.770 33 H 0.231 0.769 34 H 0.058 0.942 35 H 0.074 0.926 36 H -0.019 1.019 37 H 0.078 0.922 38 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 9.368 -19.743 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.046 3.954 3 H 0.079 0.921 4 C 0.049 3.951 5 H 0.092 0.908 6 N -0.345 5.345 7 C 0.287 3.713 8 O -0.456 6.456 9 C 0.000 4.000 10 N -0.058 5.058 11 N -0.154 5.154 12 C -0.210 4.210 13 C -0.209 4.209 14 N -0.152 5.152 15 C -0.178 4.178 16 C 0.032 3.968 17 N -0.339 5.339 18 C -0.355 4.355 19 H 0.106 0.894 20 C -0.262 4.262 21 N -0.602 5.602 22 Si 0.807 3.193 23 H -0.219 1.219 24 H -0.224 1.224 25 H -0.189 1.189 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.260 0.740 30 H 0.187 0.813 31 H 0.191 0.809 32 H 0.247 0.753 33 H 0.248 0.752 34 H 0.077 0.923 35 H 0.093 0.907 36 H -0.001 1.001 37 H 0.096 0.904 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.216 9.184 -18.483 20.640 hybrid contribution -0.101 -0.672 0.573 0.889 sum 0.115 8.513 -17.910 19.830 Atomic orbital electron populations 1.22143 0.96546 1.00586 1.01453 1.21205 0.93479 0.95339 0.85414 0.92088 1.21704 0.96027 0.90818 0.86571 0.90805 1.45660 1.68623 1.14670 1.05592 1.21082 0.77076 0.88993 0.84189 1.90772 1.50947 1.21232 1.82630 1.22007 1.09980 0.93319 0.74678 1.47580 1.03315 1.39001 1.15880 1.74021 1.16440 1.12174 1.12778 1.25454 0.97354 1.03846 0.94324 1.25453 0.96180 1.00468 0.98805 1.73998 1.17263 1.20850 1.03097 1.23183 0.97874 0.99851 0.96866 1.21651 0.95722 0.87797 0.91617 1.44731 1.59704 1.28533 1.00964 1.19413 1.26308 1.08135 0.81641 0.89407 1.25623 1.00836 0.97732 1.02003 1.70040 1.40361 1.19087 1.30741 0.85069 0.76409 0.78129 0.79669 1.21873 1.22389 1.18926 0.94990 0.93172 0.90786 0.73970 0.81331 0.80941 0.75326 0.75225 0.92341 0.90715 1.00097 0.90432 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.14 71.98 0.66 -4.41 16 2 C 0.15 5.62 3.48 45.34 0.16 5.78 16 3 H 0.06 2.01 7.69 -2.39 -0.02 2.00 16 4 C 0.15 5.27 2.76 46.18 0.13 5.40 16 5 H 0.07 2.85 7.41 -2.38 -0.02 2.83 16 6 N -0.69 -16.62 5.20 -436.92 -2.27 -18.89 16 7 C 0.50 13.12 7.90 87.66 0.69 13.82 16 8 O -0.58 -21.78 16.16 -3.03 -0.05 -21.83 16 9 C 0.12 2.10 7.02 85.63 0.60 2.70 16 10 N -0.16 -3.83 3.44 -190.80 -0.66 -4.49 16 11 N -0.31 -7.92 12.05 -56.87 -0.69 -8.60 16 12 C -0.03 -0.51 12.20 85.11 1.04 0.53 16 13 C -0.03 -0.49 12.20 85.11 1.04 0.55 16 14 N -0.31 -7.69 12.05 -56.87 -0.69 -8.38 16 15 C -0.14 -5.43 6.77 31.99 0.22 -5.21 16 16 C 0.16 7.89 5.89 86.86 0.51 8.40 16 17 N -0.61 -30.06 3.13 -668.22 -2.09 -32.15 16 18 C -0.23 -12.06 9.89 84.03 0.83 -11.22 16 19 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 21 N -0.95 -56.50 10.09 21.65 0.22 -56.29 16 22 Si 0.98 44.79 29.55 68.60 2.03 46.81 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.76 8.04 -2.39 -0.02 1.74 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.42 6.69 8.31 -92.71 -0.77 5.91 16 30 H 0.17 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.23 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.23 2.25 8.06 -2.91 -0.02 2.22 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 36 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 37 H 0.08 4.40 5.88 -2.39 -0.01 4.38 16 38 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -79.90 322.26 2.45 -77.45 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.30 Total: 13.45 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.34 Total: 12.92 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -6.17 Total: -128.80 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -79.90 2.45 -77.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088594676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.632 kcal (2) G-P(sol) polarization free energy of solvation -79.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds