Wall clock time and date at job start Fri Apr 10 2020 17:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34819 * 126.59379 * 2 1 4 4 C 1.36593 * 106.83574 * 180.14374 * 3 2 1 5 5 C 1.47526 * 125.76836 * 179.83925 * 4 3 2 6 6 O 1.21593 * 120.00379 * 359.71792 * 5 4 3 7 7 N 1.34777 * 120.00190 * 179.44711 * 5 4 3 8 8 C 1.46496 * 120.00344 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47047 * 179.97438 * 8 7 5 10 10 C 1.53783 * 113.61015 * 274.13118 * 9 8 7 11 11 C 1.53959 * 87.01842 * 220.04838 * 10 9 8 12 12 N 1.46499 * 113.53921 * 270.81324 * 11 10 9 13 13 C 1.36933 * 119.99843 * 252.49553 * 12 11 10 14 14 H 1.08004 * 120.00426 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00018 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00406 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99792 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47082 * 90.00251 * 17 15 13 19 19 H 1.48499 * 109.47069 * 210.00015 * 17 15 13 20 20 H 1.48494 * 109.47411 * 330.00378 * 17 15 13 21 21 C 1.53780 * 113.61188 * 176.52892 * 9 8 7 22 22 N 1.34403 * 108.46030 * 359.58094 * 4 3 2 23 23 N 1.28757 * 109.52121 * 0.25655 * 22 4 3 24 24 H 1.08999 * 109.47376 * 270.29495 * 1 2 3 25 25 H 1.09002 * 109.46755 * 30.29535 * 1 2 3 26 26 H 1.08997 * 109.47271 * 150.28637 * 1 2 3 27 27 H 1.07997 * 126.57976 * 0.02562 * 3 2 1 28 28 H 0.97004 * 119.99647 * 359.97438 * 7 5 4 29 29 H 1.08999 * 109.46681 * 299.99185 * 8 7 5 30 30 H 1.08993 * 109.47302 * 59.99555 * 8 7 5 31 31 H 1.08994 * 112.85067 * 45.32905 * 9 8 7 32 32 H 1.08993 * 113.61988 * 334.56911 * 10 9 8 33 33 H 1.09003 * 113.61379 * 105.47779 * 10 9 8 34 34 H 1.08997 * 113.73945 * 139.94209 * 11 10 9 35 35 H 0.96996 * 119.99842 * 72.49768 * 12 11 10 36 36 H 0.97006 * 120.00389 * 180.02562 * 16 15 13 37 37 H 1.09005 * 113.61539 * 254.52541 * 21 9 8 38 38 H 1.09000 * 113.61894 * 25.42811 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6207 -0.0033 5 6 4.7704 1.4557 -0.0078 6 8 4.6756 2.6679 -0.0141 7 7 5.9866 0.8750 0.0005 8 6 7.1943 1.7042 -0.0035 9 6 8.4312 0.8037 0.0083 10 6 8.8653 0.3719 1.4190 11 6 10.3164 0.5812 0.9493 12 7 10.9141 -0.6126 0.3461 13 6 11.8725 -1.3162 1.0254 14 1 12.1881 -0.9909 2.0057 15 6 12.4391 -2.4471 0.4536 16 7 13.3607 -3.1232 1.1063 17 14 11.8938 -3.0094 -1.2422 18 1 12.7445 -2.3648 -2.2748 19 1 12.0276 -4.4850 -1.3412 20 1 10.4758 -2.6252 -1.4589 21 6 9.7573 1.5775 -0.0801 22 7 3.5238 -0.7230 0.0041 23 7 2.3008 -1.1256 0.0063 24 1 -0.3634 0.0053 1.0276 25 1 -0.3633 0.8874 -0.5184 26 1 -0.3633 -0.8925 -0.5094 27 1 1.9561 2.1162 0.0004 28 1 6.0623 -0.0920 0.0099 29 1 7.2054 2.3256 -0.8990 30 1 7.2006 2.3412 0.8809 31 1 8.3599 -0.0227 -0.6987 32 1 8.5557 1.0639 2.2021 33 1 8.6259 -0.6659 1.6510 34 1 10.9583 1.0428 1.6996 35 1 10.6309 -0.9045 -0.5345 36 1 13.7570 -3.9132 0.7066 37 1 10.2370 1.5116 -1.0567 38 1 9.6921 2.5998 0.2924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091007490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:11:13 Heat of formation + Delta-G solvation = 97.020662 kcal Electronic energy + Delta-G solvation = -20747.908836 eV Core-core repulsion = 17435.938555 eV Total energy + Delta-G solvation = -3311.970281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.49640 -39.63586 -38.51013 -35.10422 -34.66672 -33.18787 -31.37932 -30.61343 -28.61386 -27.35200 -25.14074 -24.05555 -23.09089 -22.54789 -21.65763 -20.63241 -18.84203 -18.09103 -17.61790 -16.61954 -16.42920 -16.14586 -15.33931 -14.94651 -14.93179 -14.40031 -14.24784 -13.87868 -13.69266 -13.47549 -13.33310 -12.74023 -12.47103 -12.45454 -12.01593 -11.60624 -11.54788 -11.32647 -10.88695 -10.76391 -10.48574 -10.41067 -10.15956 -9.94724 -9.65324 -9.63114 -9.50926 -9.02742 -8.88217 -7.27767 -5.77528 -3.13544 0.79564 1.46645 1.66968 3.06941 3.15246 3.38249 3.40969 3.46257 3.92862 3.96246 4.43088 4.45528 4.58726 4.64604 4.74549 4.94858 4.98319 5.01379 5.11715 5.41960 5.43461 5.48944 5.55088 5.78721 5.88154 5.93619 5.94518 6.15611 6.26438 6.34497 6.51913 6.67597 6.77081 6.93447 7.36719 7.67846 8.00500 8.08237 8.42219 9.20203 9.92534 10.11787 11.40594 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.003246 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.671408 B = 8624.568485 C = 9385.382371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.366 5.366 3 C 0.092 3.908 4 C -0.100 4.100 5 C 0.602 3.398 6 O -0.545 6.545 7 N -0.708 5.708 8 C 0.131 3.869 9 C -0.125 4.125 10 C -0.167 4.167 11 C 0.173 3.827 12 N -0.730 5.730 13 C -0.246 4.246 14 H 0.092 0.908 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.277 1.277 21 C -0.148 4.148 22 N -0.202 5.202 23 N -0.064 5.064 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.206 0.794 28 H 0.410 0.590 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.067 0.933 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.016 10.523 -3.294 29.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.151 5.151 3 C -0.065 4.065 4 C -0.240 4.240 5 C 0.386 3.614 6 O -0.422 6.422 7 N -0.358 5.358 8 C 0.009 3.991 9 C -0.143 4.143 10 C -0.208 4.208 11 C 0.061 3.939 12 N -0.370 5.370 13 C -0.376 4.376 14 H 0.110 0.890 15 C -0.191 4.191 16 N -0.580 5.580 17 Si 0.714 3.286 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.187 4.187 22 N -0.076 5.076 23 N -0.045 5.045 24 H 0.109 0.891 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.222 0.778 28 H 0.246 0.754 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -26.849 9.750 -3.125 28.735 hybrid contribution -0.697 -0.001 -1.225 1.409 sum -27.545 9.749 -4.350 29.542 Atomic orbital electron populations 1.22205 0.72468 1.05836 1.04850 1.50411 1.09200 1.05745 1.49718 1.23375 0.90147 0.95010 0.97991 1.21547 0.94726 0.90434 1.17259 1.16749 0.81862 0.86256 0.76546 1.90798 1.86779 1.13063 1.51598 1.45870 1.05112 1.11498 1.73281 1.21533 0.82275 0.93256 1.02083 1.22767 0.92813 0.98714 1.00034 1.23892 1.00980 1.01504 0.94429 1.21039 0.91527 0.87430 0.93909 1.42520 1.46481 1.28844 1.19171 1.19111 1.11800 1.05414 1.01243 0.89031 1.24679 0.98540 0.97781 0.98069 1.69698 1.30084 1.20120 1.38091 0.86561 0.78312 0.78092 0.85638 1.21047 1.21676 1.20282 1.23456 0.95097 0.98877 1.01300 1.74674 1.12887 1.10290 1.09710 1.82042 0.93457 1.06357 1.22649 0.89136 0.88353 0.88010 0.77771 0.75398 0.91487 0.91095 0.89095 0.90929 0.91228 0.91046 0.80495 0.93005 0.91401 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.20 11.51 59.85 0.69 0.89 16 2 N -0.37 -2.83 4.03 -67.86 -0.27 -3.11 16 3 C 0.09 0.77 11.31 -16.83 -0.19 0.58 16 4 C -0.10 -1.19 6.99 -83.55 -0.58 -1.77 16 5 C 0.60 8.09 7.82 -12.47 -0.10 7.99 16 6 O -0.55 -8.38 16.86 5.28 0.09 -8.30 16 7 N -0.71 -9.19 5.55 -61.36 -0.34 -9.53 16 8 C 0.13 1.70 5.50 -4.04 -0.02 1.67 16 9 C -0.12 -1.78 3.62 -89.81 -0.33 -2.11 16 10 C -0.17 -2.71 7.44 -25.82 -0.19 -2.90 16 11 C 0.17 3.24 4.57 -67.03 -0.31 2.93 16 12 N -0.73 -17.07 5.11 -52.55 -0.27 -17.34 16 13 C -0.25 -6.91 10.45 -15.06 -0.16 -7.07 16 14 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 15 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 16 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 17 Si 0.88 22.14 27.74 -169.99 -4.71 17.42 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 21 C -0.15 -2.20 7.39 -25.92 -0.19 -2.40 16 22 N -0.20 -2.65 12.04 32.85 0.40 -2.25 16 23 N -0.06 -0.76 13.78 60.35 0.83 0.08 16 24 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 25 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 26 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.41 5.21 8.16 -40.82 -0.33 4.88 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 35 H 0.36 8.32 5.76 -40.82 -0.24 8.09 16 36 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -35.46 329.25 -5.22 -40.68 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.20 Total: 8.08 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.47 Total: -2.13 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 1.12 Total: -60.71 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.46 -5.22 -40.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091007490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.700 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds