Wall clock time and date at job start Fri Apr 10 2020 17:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34819 * 126.59379 * 2 1 4 4 C 1.36593 * 106.83574 * 180.14374 * 3 2 1 5 5 C 1.47526 * 125.76836 * 179.83925 * 4 3 2 6 6 O 1.21593 * 120.00379 * 359.71792 * 5 4 3 7 7 N 1.34777 * 120.00190 * 179.44711 * 5 4 3 8 8 C 1.46496 * 120.00344 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47047 * 179.97438 * 8 7 5 10 10 C 1.53783 * 113.61015 * 274.13118 * 9 8 7 11 11 C 1.53959 * 87.01842 * 220.04838 * 10 9 8 12 12 N 1.46499 * 113.53921 * 270.81324 * 11 10 9 13 13 C 1.36933 * 119.99843 * 252.49553 * 12 11 10 14 14 H 1.08004 * 120.00426 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00018 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00406 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99792 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47082 * 90.00251 * 17 15 13 19 19 H 1.48499 * 109.47069 * 210.00015 * 17 15 13 20 20 H 1.48494 * 109.47411 * 330.00378 * 17 15 13 21 21 C 1.53780 * 113.61188 * 176.52892 * 9 8 7 22 22 N 1.34403 * 108.46030 * 359.58094 * 4 3 2 23 23 N 1.28757 * 109.52121 * 0.25655 * 22 4 3 24 24 H 1.08999 * 109.47376 * 270.29495 * 1 2 3 25 25 H 1.09002 * 109.46755 * 30.29535 * 1 2 3 26 26 H 1.08997 * 109.47271 * 150.28637 * 1 2 3 27 27 H 1.07997 * 126.57976 * 0.02562 * 3 2 1 28 28 H 0.97004 * 119.99647 * 359.97438 * 7 5 4 29 29 H 1.08999 * 109.46681 * 299.99185 * 8 7 5 30 30 H 1.08993 * 109.47302 * 59.99555 * 8 7 5 31 31 H 1.08994 * 112.85067 * 45.32905 * 9 8 7 32 32 H 1.08993 * 113.61988 * 334.56911 * 10 9 8 33 33 H 1.09003 * 113.61379 * 105.47779 * 10 9 8 34 34 H 1.08997 * 113.73945 * 139.94209 * 11 10 9 35 35 H 0.96996 * 119.99842 * 72.49768 * 12 11 10 36 36 H 0.97006 * 120.00389 * 180.02562 * 16 15 13 37 37 H 1.09005 * 113.61539 * 254.52541 * 21 9 8 38 38 H 1.09000 * 113.61894 * 25.42811 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6207 -0.0033 5 6 4.7704 1.4557 -0.0078 6 8 4.6756 2.6679 -0.0141 7 7 5.9866 0.8750 0.0005 8 6 7.1943 1.7042 -0.0035 9 6 8.4312 0.8037 0.0083 10 6 8.8653 0.3719 1.4190 11 6 10.3164 0.5812 0.9493 12 7 10.9141 -0.6126 0.3461 13 6 11.8725 -1.3162 1.0254 14 1 12.1881 -0.9909 2.0057 15 6 12.4391 -2.4471 0.4536 16 7 13.3607 -3.1232 1.1063 17 14 11.8938 -3.0094 -1.2422 18 1 12.7445 -2.3648 -2.2748 19 1 12.0276 -4.4850 -1.3412 20 1 10.4758 -2.6252 -1.4589 21 6 9.7573 1.5775 -0.0801 22 7 3.5238 -0.7230 0.0041 23 7 2.3008 -1.1256 0.0063 24 1 -0.3634 0.0053 1.0276 25 1 -0.3633 0.8874 -0.5184 26 1 -0.3633 -0.8925 -0.5094 27 1 1.9561 2.1162 0.0004 28 1 6.0623 -0.0920 0.0099 29 1 7.2054 2.3256 -0.8990 30 1 7.2006 2.3412 0.8809 31 1 8.3599 -0.0227 -0.6987 32 1 8.5557 1.0639 2.2021 33 1 8.6259 -0.6659 1.6510 34 1 10.9583 1.0428 1.6996 35 1 10.6309 -0.9045 -0.5345 36 1 13.7570 -3.9132 0.7066 37 1 10.2370 1.5116 -1.0567 38 1 9.6921 2.5998 0.2924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091007490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:11:13 Heat of formation + Delta-G solvation = 69.117044 kcal Electronic energy + Delta-G solvation = -20749.118827 eV Core-core repulsion = 17435.938555 eV Total energy + Delta-G solvation = -3313.180273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.22512 -40.74646 -39.77886 -36.11334 -35.61930 -34.90359 -32.70089 -32.05486 -29.36870 -28.27571 -26.43788 -25.58351 -24.43882 -23.25633 -22.91901 -21.54770 -20.22243 -19.56659 -19.05292 -17.30205 -17.21611 -17.12378 -16.63170 -16.32782 -15.98108 -15.67479 -15.41979 -15.03770 -14.75495 -14.60731 -14.21489 -13.96879 -13.93500 -13.34892 -13.14515 -13.08152 -13.00210 -12.68267 -12.29143 -12.18771 -11.88065 -11.65665 -11.58155 -11.34612 -11.22676 -10.95234 -10.81956 -10.44699 -10.01774 -9.28585 -8.02496 -5.35662 0.14525 0.58174 1.17967 1.38054 1.41275 1.48328 2.13744 2.22025 2.48292 3.18097 3.27875 3.47857 3.53583 3.76520 3.80869 3.91747 3.97289 4.01685 4.29453 4.37287 4.40281 4.48837 4.67647 4.71717 4.74715 4.82206 4.95435 4.99320 5.10823 5.25455 5.34185 5.44622 5.48189 5.56894 5.81471 6.23267 6.39399 6.86977 7.08406 7.10241 7.85878 8.03894 9.19068 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.003246 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.671408 B = 8624.568485 C = 9385.382371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.352 5.352 3 C 0.112 3.888 4 C -0.129 4.129 5 C 0.604 3.396 6 O -0.568 6.568 7 N -0.709 5.709 8 C 0.139 3.861 9 C -0.109 4.109 10 C -0.157 4.157 11 C 0.145 3.855 12 N -0.735 5.735 13 C -0.231 4.231 14 H 0.058 0.942 15 C -0.066 4.066 16 N -0.984 5.984 17 Si 0.955 3.045 18 H -0.277 1.277 19 H -0.297 1.297 20 H -0.252 1.252 21 C -0.129 4.129 22 N -0.231 5.231 23 N -0.096 5.096 24 H 0.108 0.892 25 H 0.132 0.868 26 H 0.107 0.893 27 H 0.242 0.758 28 H 0.411 0.589 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.366 0.634 36 H 0.258 0.742 37 H 0.068 0.932 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.122 12.306 -4.716 32.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.136 5.136 3 C -0.047 4.047 4 C -0.270 4.270 5 C 0.389 3.611 6 O -0.447 6.447 7 N -0.359 5.359 8 C 0.016 3.984 9 C -0.128 4.128 10 C -0.198 4.198 11 C 0.036 3.964 12 N -0.376 5.376 13 C -0.362 4.362 14 H 0.076 0.924 15 C -0.257 4.257 16 N -0.635 5.635 17 Si 0.782 3.218 18 H -0.203 1.203 19 H -0.224 1.224 20 H -0.177 1.177 21 C -0.168 4.168 22 N -0.104 5.104 23 N -0.077 5.077 24 H 0.126 0.874 25 H 0.150 0.850 26 H 0.126 0.874 27 H 0.258 0.742 28 H 0.246 0.754 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.200 0.800 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -30.029 11.558 -4.547 32.496 hybrid contribution 0.160 -0.454 -0.658 0.816 sum -29.869 11.103 -5.206 32.289 Atomic orbital electron populations 1.22739 0.69240 1.07850 1.06635 1.50769 1.10802 1.04587 1.47441 1.23895 0.88959 0.96378 0.95472 1.21571 0.95483 0.90266 1.19645 1.16915 0.82269 0.86114 0.75817 1.90775 1.87155 1.13882 1.52891 1.45889 1.05256 1.11537 1.73191 1.21426 0.81499 0.92783 1.02664 1.22590 0.93473 0.98549 0.98162 1.23763 0.98711 1.00860 0.96445 1.21396 0.92423 0.87093 0.95514 1.42466 1.45998 1.29955 1.19220 1.19078 1.11841 1.05260 1.00017 0.92447 1.25508 0.99207 0.98330 1.02636 1.69882 1.32234 1.21007 1.40364 0.85415 0.79183 0.76922 0.80300 1.20298 1.22385 1.17672 1.23344 0.94222 0.99249 0.99961 1.74633 1.13917 1.11150 1.10741 1.81940 0.93629 1.08127 1.24012 0.87393 0.84972 0.87438 0.74232 0.75354 0.90709 0.90673 0.89777 0.88842 0.93439 0.92168 0.80036 0.93352 0.91286 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.09 11.51 127.77 1.47 1.56 16 2 N -0.35 -4.58 4.03 -368.59 -1.49 -6.07 16 3 C 0.11 1.57 11.31 83.85 0.95 2.51 16 4 C -0.13 -2.90 6.99 40.82 0.29 -2.61 16 5 C 0.60 15.34 7.82 86.69 0.68 16.02 16 6 O -0.57 -16.38 16.86 -4.01 -0.07 -16.44 16 7 N -0.71 -17.39 5.55 -466.29 -2.59 -19.98 16 8 C 0.14 3.25 5.50 86.38 0.47 3.73 16 9 C -0.11 -2.89 3.62 -10.27 -0.04 -2.92 16 10 C -0.16 -4.91 7.44 31.18 0.23 -4.68 16 11 C 0.15 5.33 4.57 45.58 0.21 5.54 16 12 N -0.73 -34.13 5.11 -320.17 -1.64 -35.77 16 13 C -0.23 -13.28 10.45 84.03 0.88 -12.40 16 14 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 15 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 16 N -0.98 -63.93 13.97 21.65 0.30 -63.63 16 17 Si 0.95 46.04 27.74 68.60 1.90 47.94 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 20 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 21 C -0.13 -3.50 7.39 31.12 0.23 -3.27 16 22 N -0.23 -5.95 12.04 -49.99 -0.60 -6.55 16 23 N -0.10 -2.18 13.78 37.02 0.51 -1.67 16 24 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.13 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.24 1.41 8.06 -2.91 -0.02 1.38 16 28 H 0.41 10.09 8.16 -92.71 -0.76 9.33 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 30 H 0.08 1.73 7.87 -2.39 -0.02 1.71 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.09 2.53 7.92 -2.39 -0.02 2.51 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 35 H 0.37 16.30 5.76 -92.71 -0.53 15.76 16 36 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 37 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.11 2.44 8.10 -2.39 -0.02 2.42 16 Total: -1.00 -79.56 329.25 1.91 -77.65 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.26 Total: 24.48 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 5.84 Total: 0.03 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -5.50 Total: -133.66 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.07 Total: -16.44 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Total: -79.56 1.91 -77.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091007490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.768 kcal (2) G-P(sol) polarization free energy of solvation -79.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds