Wall clock time and date at job start Fri Apr 10 2020 17:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.29612 * 2 1 4 4 C 1.54007 * 110.32479 * 237.86305 * 2 1 3 5 5 N 1.47485 * 107.08534 * 242.31243 * 4 2 1 6 6 C 1.34777 * 127.03146 * 154.51522 * 5 4 2 7 7 O 1.21554 * 119.99761 * 180.02562 * 6 5 4 8 8 C 1.47868 * 120.00103 * 0.02794 * 6 5 4 9 9 N 1.34544 * 126.04708 * 359.97245 * 8 6 5 10 10 C 1.30872 * 107.26797 * 180.02562 * 9 8 6 11 11 N 1.34582 * 107.62602 * 359.97438 * 10 9 8 12 12 H 0.97006 * 125.75087 * 180.02562 * 11 10 9 13 13 N 1.28856 * 108.50426 * 359.97438 * 11 10 9 14 14 C 1.48116 * 105.93394 * 334.77997 * 5 4 2 15 15 C 1.54604 * 103.42089 * 39.02252 * 14 5 4 16 16 H 1.09005 * 110.57201 * 81.17208 * 15 14 5 17 17 C 1.53002 * 110.98621 * 204.37457 * 15 14 5 18 18 N 1.46499 * 109.47208 * 288.65202 * 17 15 14 19 19 C 1.36937 * 119.99928 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00197 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99712 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00287 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47292 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46952 * 120.00305 * 23 21 19 26 26 H 1.48497 * 109.47484 * 240.00209 * 23 21 19 27 27 H 1.08996 * 109.47495 * 180.68398 * 1 2 3 28 28 H 1.09003 * 109.46965 * 300.68056 * 1 2 3 29 29 H 1.09000 * 109.47155 * 60.67854 * 1 2 3 30 30 H 1.09003 * 109.90940 * 122.95120 * 4 2 1 31 31 H 1.09004 * 110.07491 * 1.76523 * 4 2 1 32 32 H 1.07998 * 126.18762 * 180.02562 * 10 9 8 33 33 H 1.09000 * 110.66566 * 157.50730 * 14 5 4 34 34 H 1.09000 * 110.65956 * 280.62464 * 14 5 4 35 35 H 1.08998 * 109.47340 * 48.65442 * 17 15 14 36 36 H 1.09002 * 109.46795 * 168.65184 * 17 15 14 37 37 H 0.97007 * 119.99723 * 0.02562 * 18 17 15 38 38 H 0.96999 * 120.00135 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0222 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8297 -1.9204 -0.7103 6 6 3.0643 -3.0860 -1.3449 7 8 3.7153 -3.9551 -0.7985 8 6 2.5300 -3.3076 -2.7057 9 7 1.7977 -2.4342 -3.4207 10 6 1.5223 -3.0043 -4.5660 11 7 2.0840 -4.2273 -4.5580 12 1 2.0426 -4.8747 -5.2792 13 7 2.6871 -4.3929 -3.4315 14 6 3.2816 -1.5370 0.6472 15 6 2.0693 -0.7721 1.2263 16 1 1.3209 -1.4693 1.6031 17 6 2.5073 0.1966 2.3267 18 7 2.9002 -0.5618 3.5169 19 6 3.3310 0.0971 4.6373 20 1 3.3806 1.1759 4.6437 21 6 3.7028 -0.6215 5.7653 22 7 3.6418 -1.9363 5.7577 23 14 4.2911 0.2774 7.2934 24 1 4.2679 1.7415 7.0462 25 1 3.3958 -0.0460 8.4332 26 1 5.6766 -0.1488 7.6159 27 1 -0.3634 -1.0275 0.0123 28 1 -0.3633 0.5244 0.8838 29 1 -0.3633 0.5033 -0.8960 30 1 2.7166 -0.1221 -1.8112 31 1 1.2353 -1.1172 -1.8378 32 1 0.9486 -2.5714 -5.3722 33 1 3.4980 -2.4224 1.2449 34 1 4.1541 -0.8859 0.5924 35 1 3.3540 0.7864 1.9757 36 1 1.6801 0.8612 2.5760 37 1 2.8552 -1.5308 3.5112 38 1 3.9020 -2.4384 6.5457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106779135.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:11:38 Heat of formation + Delta-G solvation = 72.859459 kcal Electronic energy + Delta-G solvation = -21601.009086 eV Core-core repulsion = 18287.991097 eV Total energy + Delta-G solvation = -3313.017989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.72983 -39.83732 -37.74891 -34.65220 -33.84372 -32.62730 -31.65285 -31.30618 -29.12011 -26.53268 -25.87203 -24.03727 -23.19226 -22.77720 -21.07511 -19.84243 -19.78288 -18.77318 -17.13960 -16.73041 -16.53332 -16.15812 -15.54765 -14.85215 -14.54902 -14.15764 -13.96473 -13.46518 -13.16718 -12.91416 -12.85214 -12.50537 -12.28339 -11.96349 -11.71390 -11.22118 -11.05606 -11.00975 -10.81674 -10.68409 -10.45295 -10.35516 -10.25676 -10.06220 -10.00957 -9.91616 -9.60684 -8.82777 -8.50913 -6.86276 -5.69888 -2.99086 1.18309 1.86702 2.24119 2.94538 3.33100 3.48135 3.53201 3.55912 3.83513 4.32922 4.46688 4.63710 4.77381 4.94428 5.05698 5.43732 5.58606 5.62527 5.65624 5.68370 5.75406 5.88675 5.94677 6.05361 6.10187 6.17077 6.20733 6.28722 6.30334 6.39477 6.48001 6.60688 6.78786 6.92446 7.54482 7.70375 7.76071 8.19333 8.48296 9.59532 10.17357 10.51649 11.52823 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031137 B = 0.003664 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.042353 B = 7640.593865 C = 8325.937240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.086 0.914 4 C 0.106 3.894 5 N -0.601 5.601 6 C 0.625 3.375 7 O -0.517 6.517 8 C 0.159 3.841 9 N -0.480 5.480 10 C 0.194 3.806 11 N -0.403 5.403 12 H 0.452 0.548 13 N -0.251 5.251 14 C 0.117 3.883 15 C -0.102 4.102 16 H 0.084 0.916 17 C 0.165 3.835 18 N -0.733 5.733 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.229 0.771 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.384 0.616 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 0.575 -25.254 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.105 0.895 4 C -0.017 4.017 5 N -0.334 5.334 6 C 0.408 3.592 7 O -0.390 6.390 8 C -0.121 4.121 9 N -0.207 5.207 10 C -0.104 4.104 11 N -0.125 5.125 12 H 0.298 0.702 13 N -0.090 5.090 14 C -0.004 4.004 15 C -0.122 4.122 16 H 0.102 0.898 17 C 0.037 3.963 18 N -0.378 5.378 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.245 0.755 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.218 0.782 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.044 0.018 -24.417 25.413 hybrid contribution 0.083 -0.177 0.018 0.197 sum -6.961 -0.160 -24.399 25.373 Atomic orbital electron populations 1.21805 0.94255 1.01845 1.01710 1.22126 0.96350 0.99720 0.93970 0.89540 1.22429 0.96429 0.86673 0.96194 1.48467 1.52725 1.14034 1.18173 1.15804 0.80312 0.81499 0.81553 1.90873 1.39724 1.42700 1.65685 1.23829 1.01904 0.88303 0.98098 1.71410 1.15877 1.30112 1.03278 1.26687 1.00185 0.84758 0.98787 1.45271 1.37453 1.15775 1.14038 0.70185 1.74407 1.16079 1.24089 0.94443 1.22598 0.97104 1.00306 0.80391 1.22528 0.96965 0.97903 0.94801 0.89789 1.20627 0.96607 0.92721 0.86298 1.42398 1.79250 1.05976 1.10158 1.19253 1.35820 0.91266 0.90729 0.91128 1.24752 1.02463 0.95484 0.98309 1.69675 1.54417 1.04521 1.29346 0.86130 0.78078 0.78602 0.83446 1.20584 1.21948 1.21901 0.92773 0.92052 0.92728 0.91727 0.88467 0.75451 0.89067 0.90300 0.96030 0.95823 0.78190 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.90 37.16 0.33 -1.22 16 2 C -0.10 -1.29 3.17 -89.24 -0.28 -1.57 16 3 H 0.09 1.01 7.85 -51.93 -0.41 0.61 16 4 C 0.11 1.33 5.92 -2.98 -0.02 1.31 16 5 N -0.60 -9.49 3.29 -171.07 -0.56 -10.05 16 6 C 0.62 10.89 7.90 -12.32 -0.10 10.79 16 7 O -0.52 -10.92 17.29 5.32 0.09 -10.83 16 8 C 0.16 2.27 7.81 -156.36 -1.22 1.05 16 9 N -0.48 -5.22 8.57 -12.37 -0.11 -5.33 16 10 C 0.19 1.18 13.14 -90.48 -1.19 -0.01 16 11 N -0.40 -2.70 6.93 29.56 0.20 -2.50 16 12 H 0.45 0.93 8.96 -190.20 -1.71 -0.78 16 13 N -0.25 -3.20 12.30 32.07 0.39 -2.81 16 14 C 0.12 2.02 6.44 -2.31 -0.01 2.01 16 15 C -0.10 -1.67 2.60 -88.93 -0.23 -1.91 16 16 H 0.08 1.48 7.86 -51.93 -0.41 1.07 16 17 C 0.17 3.26 5.58 -4.04 -0.02 3.24 16 18 N -0.73 -18.70 5.52 -59.91 -0.33 -19.03 16 19 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 23 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.16 5.69 -51.93 -0.30 0.87 16 32 H 0.23 0.09 8.06 -52.49 -0.42 -0.33 16 33 H 0.09 1.82 7.85 -51.93 -0.41 1.41 16 34 H 0.08 1.34 7.95 -51.93 -0.41 0.93 16 35 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 38 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 321.55 15.07 4.85 4.85 Total: -1.00 -37.26 321.55 -9.20 -46.47 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.45 Total: 3.31 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -2.99 Total: 6.26 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: 0.32 Total: -67.80 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -37.26 -9.20 -46.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106779135.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.325 kcal (2) G-P(sol) polarization free energy of solvation -37.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds