Wall clock time and date at job start Fri Apr 10 2020 17:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.29612 * 2 1 4 4 C 1.54007 * 110.32479 * 237.86305 * 2 1 3 5 5 N 1.47485 * 107.08534 * 242.31243 * 4 2 1 6 6 C 1.34777 * 127.03146 * 154.51522 * 5 4 2 7 7 O 1.21554 * 119.99761 * 180.02562 * 6 5 4 8 8 C 1.47868 * 120.00103 * 0.02794 * 6 5 4 9 9 N 1.34544 * 126.04708 * 359.97245 * 8 6 5 10 10 C 1.30872 * 107.26797 * 180.02562 * 9 8 6 11 11 N 1.34582 * 107.62602 * 359.97438 * 10 9 8 12 12 H 0.97006 * 125.75087 * 180.02562 * 11 10 9 13 13 N 1.28856 * 108.50426 * 359.97438 * 11 10 9 14 14 C 1.48116 * 105.93394 * 334.77997 * 5 4 2 15 15 C 1.54604 * 103.42089 * 39.02252 * 14 5 4 16 16 H 1.09005 * 110.57201 * 81.17208 * 15 14 5 17 17 C 1.53002 * 110.98621 * 204.37457 * 15 14 5 18 18 N 1.46499 * 109.47208 * 288.65202 * 17 15 14 19 19 C 1.36937 * 119.99928 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00197 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99712 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00287 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47292 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46952 * 120.00305 * 23 21 19 26 26 H 1.48497 * 109.47484 * 240.00209 * 23 21 19 27 27 H 1.08996 * 109.47495 * 180.68398 * 1 2 3 28 28 H 1.09003 * 109.46965 * 300.68056 * 1 2 3 29 29 H 1.09000 * 109.47155 * 60.67854 * 1 2 3 30 30 H 1.09003 * 109.90940 * 122.95120 * 4 2 1 31 31 H 1.09004 * 110.07491 * 1.76523 * 4 2 1 32 32 H 1.07998 * 126.18762 * 180.02562 * 10 9 8 33 33 H 1.09000 * 110.66566 * 157.50730 * 14 5 4 34 34 H 1.09000 * 110.65956 * 280.62464 * 14 5 4 35 35 H 1.08998 * 109.47340 * 48.65442 * 17 15 14 36 36 H 1.09002 * 109.46795 * 168.65184 * 17 15 14 37 37 H 0.97007 * 119.99723 * 0.02562 * 18 17 15 38 38 H 0.96999 * 120.00135 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0222 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8297 -1.9204 -0.7103 6 6 3.0643 -3.0860 -1.3449 7 8 3.7153 -3.9551 -0.7985 8 6 2.5300 -3.3076 -2.7057 9 7 1.7977 -2.4342 -3.4207 10 6 1.5223 -3.0043 -4.5660 11 7 2.0840 -4.2273 -4.5580 12 1 2.0426 -4.8747 -5.2792 13 7 2.6871 -4.3929 -3.4315 14 6 3.2816 -1.5370 0.6472 15 6 2.0693 -0.7721 1.2263 16 1 1.3209 -1.4693 1.6031 17 6 2.5073 0.1966 2.3267 18 7 2.9002 -0.5618 3.5169 19 6 3.3310 0.0971 4.6373 20 1 3.3806 1.1759 4.6437 21 6 3.7028 -0.6215 5.7653 22 7 3.6418 -1.9363 5.7577 23 14 4.2911 0.2774 7.2934 24 1 4.2679 1.7415 7.0462 25 1 3.3958 -0.0460 8.4332 26 1 5.6766 -0.1488 7.6159 27 1 -0.3634 -1.0275 0.0123 28 1 -0.3633 0.5244 0.8838 29 1 -0.3633 0.5033 -0.8960 30 1 2.7166 -0.1221 -1.8112 31 1 1.2353 -1.1172 -1.8378 32 1 0.9486 -2.5714 -5.3722 33 1 3.4980 -2.4224 1.2449 34 1 4.1541 -0.8859 0.5924 35 1 3.3540 0.7864 1.9757 36 1 1.6801 0.8612 2.5760 37 1 2.8552 -1.5308 3.5112 38 1 3.9020 -2.4384 6.5457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106779135.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:11:35 Heat of formation + Delta-G solvation = 45.652812 kcal Electronic energy + Delta-G solvation = -21602.188855 eV Core-core repulsion = 18287.991097 eV Total energy + Delta-G solvation = -3314.197758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -44.47381 -41.11612 -39.10358 -36.45913 -34.78840 -33.93966 -33.02129 -32.43859 -30.71725 -27.82913 -27.17461 -25.59006 -24.30954 -23.82228 -22.45198 -21.10442 -20.76873 -19.68087 -19.02252 -17.90146 -17.56172 -17.29439 -16.79631 -16.36351 -15.79294 -15.48774 -15.34286 -15.11606 -14.80901 -14.36390 -14.03588 -13.63295 -13.45300 -13.32319 -12.98459 -12.83394 -12.74588 -12.42811 -12.07598 -11.93640 -11.77970 -11.72373 -11.63177 -11.56349 -11.36197 -11.20522 -10.92499 -10.83011 -9.77983 -8.97523 -7.92173 -5.21609 0.25390 1.16576 1.40009 1.48524 1.50010 1.60073 2.13752 2.18614 2.58054 2.97653 3.41090 3.45617 3.62879 3.67028 3.84927 4.02768 4.21740 4.31572 4.42784 4.56313 4.58859 4.76392 4.81283 4.87423 4.90799 4.93395 5.10185 5.11509 5.24347 5.27840 5.32983 5.40101 5.52526 5.59596 5.97402 6.29260 6.35955 6.78032 7.06608 7.35147 8.11634 8.33444 9.31824 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031137 B = 0.003664 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.042353 B = 7640.593865 C = 8325.937240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 H 0.106 0.894 4 C 0.110 3.890 5 N -0.599 5.599 6 C 0.615 3.385 7 O -0.574 6.574 8 C 0.133 3.867 9 N -0.501 5.501 10 C 0.224 3.776 11 N -0.383 5.383 12 H 0.472 0.528 13 N -0.283 5.283 14 C 0.119 3.881 15 C -0.092 4.092 16 H 0.066 0.934 17 C 0.166 3.834 18 N -0.749 5.749 19 C -0.240 4.240 20 H 0.081 0.919 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.975 3.025 24 H -0.261 1.261 25 H -0.294 1.294 26 H -0.296 1.296 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.291 0.709 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.035 0.965 37 H 0.371 0.629 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.307 2.850 -28.145 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.124 0.876 4 C -0.011 4.011 5 N -0.331 5.331 6 C 0.401 3.599 7 O -0.451 6.451 8 C -0.147 4.147 9 N -0.228 5.228 10 C -0.072 4.072 11 N -0.108 5.108 12 H 0.323 0.677 13 N -0.124 5.124 14 C -0.004 4.004 15 C -0.112 4.112 16 H 0.085 0.915 17 C 0.040 3.960 18 N -0.391 5.391 19 C -0.372 4.372 20 H 0.099 0.901 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.186 1.186 25 H -0.222 1.222 26 H -0.224 1.224 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.306 0.694 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.202 0.798 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.631 2.354 -27.384 28.808 hybrid contribution 0.505 -0.879 0.726 1.247 sum -8.126 1.474 -26.657 27.907 Atomic orbital electron populations 1.21785 0.92731 1.01634 1.03040 1.22143 0.97531 0.99927 0.91457 0.87606 1.22617 0.96780 0.85535 0.96209 1.48521 1.52508 1.14665 1.17362 1.16357 0.79644 0.81020 0.82884 1.90819 1.42332 1.44455 1.67500 1.23120 1.04298 0.89979 0.97295 1.71312 1.16315 1.30399 1.04767 1.27795 0.97791 0.83436 0.98205 1.45254 1.35965 1.16733 1.12864 0.67668 1.74288 1.17394 1.24394 0.96359 1.22406 0.97830 0.98773 0.81347 1.22342 0.96055 0.97310 0.95460 0.91540 1.20796 0.96968 0.93041 0.85242 1.42666 1.79312 1.05705 1.11451 1.19713 1.34195 0.91873 0.91431 0.90080 1.25627 1.03714 0.96244 1.01681 1.69854 1.56385 1.06222 1.29943 0.85042 0.76847 0.78351 0.79335 1.18552 1.22179 1.22367 0.93754 0.92421 0.89715 0.89985 0.87155 0.69382 0.93013 0.90172 0.95125 0.94750 0.79782 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.90 71.98 0.64 -2.01 16 2 C -0.09 -2.11 3.17 -9.90 -0.03 -2.14 16 3 H 0.11 2.11 7.85 -2.39 -0.02 2.09 16 4 C 0.11 2.55 5.92 86.53 0.51 3.06 16 5 N -0.60 -19.32 3.29 -813.42 -2.68 -22.00 16 6 C 0.62 22.42 7.90 86.79 0.69 23.10 16 7 O -0.57 -26.16 17.29 -3.89 -0.07 -26.23 16 8 C 0.13 3.72 7.81 137.13 1.07 4.80 16 9 N -0.50 -9.52 8.57 -193.04 -1.66 -11.18 16 10 C 0.22 1.74 13.14 180.30 2.37 4.11 16 11 N -0.38 -4.02 6.93 -60.38 -0.42 -4.44 16 12 H 0.47 0.36 8.96 -219.79 -1.97 -1.61 16 13 N -0.28 -7.01 12.30 -52.44 -0.65 -7.66 16 14 C 0.12 4.31 6.44 86.61 0.56 4.87 16 15 C -0.09 -3.03 2.60 -9.70 -0.03 -3.06 16 16 H 0.07 2.44 7.86 -2.38 -0.02 2.42 16 17 C 0.17 6.49 5.58 86.38 0.48 6.98 16 18 N -0.75 -39.05 5.52 -343.45 -1.90 -40.95 16 19 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 21 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 22 N -0.97 -62.20 13.06 21.65 0.28 -61.92 16 23 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 24 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.11 2.34 5.69 -2.38 -0.01 2.32 16 32 H 0.29 -1.77 8.06 -2.91 -0.02 -1.80 16 33 H 0.05 2.27 7.85 -2.39 -0.02 2.25 16 34 H 0.08 2.84 7.95 -2.39 -0.02 2.82 16 35 H 0.03 1.17 8.00 -2.39 -0.02 1.15 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.37 21.13 7.67 -92.70 -0.71 20.42 16 38 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -86.44 321.55 0.94 -85.50 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -1.58 Total: 16.93 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 7.57 Total: 22.57 kcal Atomic # 7 Polarization: -141.13 SS G_CDS: -7.01 Total: -148.15 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.07 Total: -26.23 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -86.44 0.94 -85.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106779135.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.154 kcal (2) G-P(sol) polarization free energy of solvation -86.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds