Wall clock time and date at job start Fri Apr 10 2020 17:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35488 * 126.97759 * 2 1 4 4 N 1.30524 * 107.30570 * 179.97438 * 3 2 1 5 5 N 1.28596 * 109.67342 * 0.02562 * 4 3 2 6 6 C 1.30520 * 109.67290 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.34920 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.87332 * 164.27426 * 7 6 5 9 9 C 1.54317 * 109.88053 * 285.29376 * 7 6 5 10 10 C 1.55156 * 102.94501 * 141.60944 * 9 7 6 11 11 C 1.54910 * 101.57983 * 324.49575 * 10 9 7 12 12 N 1.47020 * 109.88041 * 43.25753 * 7 6 5 13 13 C 1.34785 * 125.64716 * 61.61011 * 12 7 6 14 14 O 1.21584 * 120.00099 * 359.97438 * 13 12 7 15 15 N 1.34773 * 119.99804 * 180.02562 * 13 12 7 16 16 C 1.46504 * 120.00247 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47259 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00271 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99456 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00583 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99582 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46925 * 90.00166 * 21 19 17 23 23 H 1.48499 * 109.47385 * 209.99990 * 21 19 17 24 24 H 1.48500 * 109.47511 * 330.00186 * 21 19 17 25 25 H 1.09007 * 109.46446 * 90.03189 * 1 2 3 26 26 H 1.08999 * 109.47074 * 210.02444 * 1 2 3 27 27 H 1.08996 * 109.47711 * 330.02869 * 1 2 3 28 28 H 1.08003 * 126.34772 * 0.23993 * 3 2 1 29 29 H 1.09006 * 110.71907 * 259.97210 * 9 7 6 30 30 H 1.09004 * 110.72416 * 23.24267 * 9 7 6 31 31 H 1.09001 * 111.00785 * 82.56750 * 10 9 7 32 32 H 1.09000 * 111.00560 * 206.42130 * 10 9 7 33 33 H 1.09000 * 110.36958 * 155.84854 * 11 10 9 34 34 H 1.09003 * 110.36884 * 278.17036 * 11 10 9 35 35 H 0.97006 * 120.00469 * 0.02562 * 15 13 12 36 36 H 1.08995 * 109.46534 * 300.00064 * 16 15 13 37 37 H 1.08996 * 109.46839 * 59.99544 * 16 15 13 38 38 H 0.96994 * 120.00121 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0006 5 7 3.5091 -0.6430 0.0004 6 6 2.2801 -1.0824 0.0002 7 6 1.8477 -2.5260 0.0005 8 1 0.7961 -2.5978 0.2781 9 6 2.0641 -3.1389 -1.3991 10 6 2.5588 -4.5739 -1.0774 11 6 3.4037 -4.3329 0.1984 12 7 2.6686 -3.2936 0.9484 13 6 2.7386 -3.0819 2.2776 14 8 2.0862 -2.1910 2.7865 15 7 3.5325 -3.8571 3.0425 16 6 3.6082 -3.6275 4.4875 17 6 4.5577 -4.6214 5.1051 18 1 5.0548 -5.3515 4.4836 19 6 4.7910 -4.5994 6.4638 20 7 4.1854 -3.7107 7.2208 21 14 5.9675 -5.8319 7.2295 22 1 7.3410 -5.2672 7.2356 23 1 5.5445 -6.1199 8.6235 24 1 5.9524 -7.0883 6.4381 25 1 -0.3632 -0.0006 -1.0278 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5133 28 1 1.9701 2.1170 0.0036 29 1 1.1273 -3.1697 -1.9557 30 1 2.8232 -2.5838 -1.9501 31 1 1.7203 -5.2391 -0.8708 32 1 3.1756 -4.9651 -1.8865 33 1 3.4710 -5.2476 0.7873 34 1 4.3994 -3.9778 -0.0675 35 1 4.0539 -4.5673 2.6364 36 1 3.9672 -2.6158 4.6761 37 1 2.6183 -3.7496 4.9271 38 1 4.3493 -3.6955 8.1766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116830632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:11:44 Heat of formation + Delta-G solvation = 29.856132 kcal Electronic energy + Delta-G solvation = -22124.862633 eV Core-core repulsion = 18809.979880 eV Total energy + Delta-G solvation = -3314.882753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.08519 -41.19970 -38.67245 -36.19110 -35.97163 -34.46828 -32.57749 -32.38278 -29.46316 -28.98923 -28.37979 -25.40431 -24.25070 -23.34893 -22.73527 -21.81421 -20.75988 -19.50982 -18.25106 -18.03516 -17.52058 -17.18329 -16.89850 -16.49884 -15.93349 -15.83851 -15.16066 -15.06537 -14.36492 -14.30925 -14.18240 -14.09830 -13.78217 -13.68661 -13.22394 -12.90930 -12.77550 -12.71420 -12.48322 -12.26580 -12.11568 -11.72046 -11.50318 -11.35683 -11.26589 -11.06358 -10.82595 -10.30878 -10.09203 -9.50035 -8.30629 -6.47782 0.80613 1.41464 1.45566 1.51443 1.57138 1.75513 1.95904 2.19176 2.37614 3.04210 3.16950 3.27273 3.56443 3.70591 3.75317 3.84729 3.95157 4.18684 4.37800 4.45723 4.53786 4.63893 4.72576 4.84720 4.88087 4.96280 4.99191 5.10666 5.17934 5.21062 5.28948 5.36222 5.46338 5.67311 5.81424 5.98037 6.14933 6.63339 7.12641 7.22401 7.64509 7.75873 8.82137 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022240 B = 0.004492 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.670759 B = 6231.190053 C = 6883.076556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.471 5.471 3 C 0.155 3.845 4 N -0.356 5.356 5 N -0.332 5.332 6 C 0.171 3.829 7 C 0.234 3.766 8 H 0.097 0.903 9 C -0.107 4.107 10 C -0.110 4.110 11 C 0.087 3.913 12 N -0.625 5.625 13 C 0.712 3.288 14 O -0.645 6.645 15 N -0.721 5.721 16 C 0.290 3.710 17 C -0.555 4.555 18 H 0.083 0.917 19 C 0.004 3.996 20 N -0.932 5.932 21 Si 0.989 3.011 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.252 1.252 25 H 0.118 0.882 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.261 0.739 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.402 0.598 36 H -0.025 1.025 37 H -0.012 1.012 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.929 0.018 -22.372 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.161 5.161 3 C -0.134 4.134 4 N -0.195 5.195 5 N -0.172 5.172 6 C -0.100 4.100 7 C 0.127 3.873 8 H 0.115 0.885 9 C -0.145 4.145 10 C -0.148 4.148 11 C -0.035 4.035 12 N -0.363 5.363 13 C 0.414 3.586 14 O -0.527 6.527 15 N -0.374 5.374 16 C 0.167 3.833 17 C -0.593 4.593 18 H 0.101 0.899 19 C -0.195 4.195 20 N -0.570 5.570 21 Si 0.811 3.189 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.176 1.176 25 H 0.136 0.864 26 H 0.104 0.896 27 H 0.130 0.870 28 H 0.276 0.724 29 H 0.144 0.856 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.238 0.762 36 H -0.007 1.007 37 H 0.006 0.994 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.923 0.730 -21.699 23.473 hybrid contribution -0.512 0.040 1.128 1.240 sum -9.435 0.770 -20.571 22.644 Atomic orbital electron populations 1.22507 0.72515 1.06391 1.06231 1.46400 1.10893 1.05634 1.53193 1.27179 0.86438 0.96586 1.03154 1.74084 1.20970 1.03668 1.20774 1.74043 1.19344 1.03601 1.20223 1.25507 0.87435 0.93791 1.03247 1.20019 0.94856 0.80530 0.91915 0.88500 1.22724 1.04583 0.96193 0.91022 1.22779 1.00428 0.95803 0.95806 1.22696 0.96271 0.90241 0.94265 1.47580 1.49029 1.36409 1.03271 1.15782 0.80491 0.81609 0.80747 1.90798 1.51361 1.37016 1.73534 1.45308 1.46887 1.36350 1.08866 1.18369 0.95174 0.94811 0.74929 1.21570 1.26887 1.17016 0.93833 0.89886 1.26103 0.97947 0.98081 0.97417 1.70148 1.43874 1.36701 1.06324 0.85101 0.77782 0.78561 0.77415 1.19796 1.20630 1.17604 0.86370 0.89600 0.87006 0.72354 0.85647 0.90737 0.88465 0.86515 0.89645 0.91674 0.76235 1.00747 0.99389 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.83 11.01 127.77 1.41 2.24 16 2 N -0.47 -11.80 3.15 -542.06 -1.71 -13.50 16 3 C 0.15 4.13 12.74 180.11 2.30 6.43 16 4 N -0.36 -13.47 12.21 -59.99 -0.73 -14.20 16 5 N -0.33 -13.27 12.21 -50.15 -0.61 -13.89 16 6 C 0.17 5.46 5.97 137.98 0.82 6.28 16 7 C 0.23 6.13 3.23 44.59 0.14 6.28 16 8 H 0.10 2.28 6.94 -2.39 -0.02 2.26 16 9 C -0.11 -1.63 6.47 31.78 0.21 -1.43 16 10 C -0.11 -1.44 7.09 31.99 0.23 -1.22 16 11 C 0.09 2.02 6.60 86.79 0.57 2.59 16 12 N -0.62 -20.84 3.06 -809.22 -2.48 -23.32 16 13 C 0.71 33.02 8.28 179.05 1.48 34.50 16 14 O -0.64 -35.58 16.18 -3.98 -0.06 -35.64 16 15 N -0.72 -34.55 5.51 -482.30 -2.66 -37.21 16 16 C 0.29 17.23 5.43 85.63 0.46 17.69 16 17 C -0.56 -31.83 9.28 25.60 0.24 -31.59 16 18 H 0.08 4.31 7.60 -2.91 -0.02 4.29 16 19 C 0.00 0.23 5.46 84.66 0.46 0.69 16 20 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 21 Si 0.99 43.68 29.54 68.60 2.03 45.71 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 25 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.09 1.25 7.07 -2.39 -0.02 1.23 16 27 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.26 3.85 8.06 -2.91 -0.02 3.83 16 29 H 0.13 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.07 1.35 7.84 -2.38 -0.02 1.33 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.85 7.31 -2.39 -0.02 1.83 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.40 16.39 6.82 -92.70 -0.63 15.76 16 36 H -0.03 -1.73 8.14 -2.39 -0.02 -1.75 16 37 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -93.46 323.08 2.83 -90.63 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.45 Total: 16.90 kcal Atomic # 6 Polarization: 34.15 SS G_CDS: 8.32 Total: 42.47 kcal Atomic # 7 Polarization: -152.17 SS G_CDS: -7.90 Total: -160.07 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.06 Total: -35.64 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -93.46 2.83 -90.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116830632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.489 kcal (2) G-P(sol) polarization free energy of solvation -93.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds