Wall clock time and date at job start Fri Apr 10 2020 17:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 109.47228 * 2 1 4 4 C 1.53003 * 109.47115 * 240.00319 * 2 1 3 5 5 C 1.53004 * 109.46997 * 65.62612 * 4 2 1 6 6 C 1.50707 * 109.46715 * 174.62382 * 5 4 2 7 7 H 1.08002 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99568 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00070 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00013 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47300 * 59.99269 * 10 8 6 12 12 H 1.48510 * 109.46854 * 299.99814 * 10 8 6 13 13 H 1.48498 * 109.47401 * 180.02562 * 10 8 6 14 14 N 1.46895 * 109.47663 * 120.00408 * 2 1 3 15 15 C 1.47437 * 111.00697 * 183.91480 * 14 2 1 16 16 C 1.54313 * 107.23757 * 123.25239 * 15 14 2 17 17 C 1.55143 * 103.01816 * 22.28734 * 16 15 14 18 18 C 1.47850 * 110.99924 * 304.75685 * 14 2 1 19 19 H 1.08999 * 110.37090 * 332.46437 * 18 14 2 20 20 C 1.50702 * 110.37569 * 94.80194 * 18 14 2 21 21 C 1.33385 * 125.20734 * 219.72629 * 20 18 14 22 22 C 1.38425 * 114.92160 * 179.86014 * 21 20 18 23 23 C 1.33388 * 114.91977 * 0.42891 * 22 21 20 24 24 S 1.75880 * 109.59551 * 359.76995 * 23 22 21 25 25 H 1.08994 * 109.47531 * 59.99921 * 1 2 3 26 26 H 1.09005 * 109.47289 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47134 * 299.99666 * 1 2 3 28 28 H 1.08998 * 109.46935 * 305.62887 * 4 2 1 29 29 H 1.08999 * 109.47204 * 185.62807 * 4 2 1 30 30 H 1.08992 * 109.47149 * 54.62703 * 5 4 2 31 31 H 1.09001 * 109.47116 * 294.62336 * 5 4 2 32 32 H 0.96998 * 120.00233 * 0.02562 * 9 8 6 33 33 H 1.09001 * 109.89126 * 242.66856 * 15 14 2 34 34 H 1.09008 * 109.88349 * 3.84742 * 15 14 2 35 35 H 1.09000 * 110.70553 * 140.66990 * 16 15 14 36 36 H 1.08996 * 110.70976 * 263.72940 * 16 15 14 37 37 H 1.08997 * 110.98801 * 82.43668 * 17 16 15 38 38 H 1.09003 * 110.98845 * 206.21749 * 17 16 15 39 39 H 1.08006 * 122.53639 * 0.02562 * 21 20 18 40 40 H 1.08002 * 122.53777 * 180.19395 * 22 21 20 41 41 H 1.07999 * 125.20206 * 179.79691 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6486 0.0772 -2.4945 6 6 2.2626 -0.5612 -3.7139 7 1 2.8713 -1.4473 -3.6109 8 6 2.0480 -0.0132 -4.9607 9 7 1.3072 1.0662 -5.0860 10 14 2.8083 -0.8047 -6.4723 11 1 2.3135 -2.1987 -6.6029 12 1 4.2870 -0.8153 -6.3346 13 1 2.4297 -0.0291 -7.6807 14 7 2.0197 -0.6925 1.1993 15 6 3.4905 -0.6314 1.2813 16 6 3.8464 0.0174 2.6354 17 6 2.5740 -0.2317 3.4875 18 6 1.4545 -0.0915 2.4262 19 1 1.2188 0.9597 2.2599 20 6 0.2231 -0.8442 2.8600 21 6 -0.8877 -0.2872 3.3450 22 6 -1.8923 -1.1807 3.6744 23 6 -1.5941 -2.4639 3.4652 24 16 0.0335 -2.5922 2.8111 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5966 -1.7156 -1.3012 29 1 3.1252 -0.8093 -1.2004 30 1 2.0112 1.1006 -2.3987 31 1 0.5633 0.0841 -2.5955 32 1 0.9120 1.4770 -4.3011 33 1 3.9069 -1.6375 1.2313 34 1 3.8824 -0.0246 0.4650 35 1 4.7114 -0.4728 3.0821 36 1 4.0299 1.0850 2.5150 37 1 2.5817 -1.2335 3.9169 38 1 2.4715 0.5241 4.2662 39 1 -0.9960 0.7803 3.4687 40 1 -2.8440 -0.8631 4.0741 41 1 -2.2516 -3.2967 3.6664 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:13 Heat of formation + Delta-G solvation = 18.481328 kcal Electronic energy + Delta-G solvation = -19919.431784 eV Core-core repulsion = 17118.056245 eV Total energy + Delta-G solvation = -2801.375539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.64778 -37.40642 -35.13790 -32.92897 -31.27546 -29.91643 -28.09192 -27.23356 -24.71050 -23.77968 -22.32874 -21.20904 -20.74023 -19.54889 -18.98963 -17.20036 -16.72241 -15.87961 -15.42254 -14.97026 -14.46092 -13.69790 -13.67930 -13.52538 -13.07491 -12.95489 -12.73197 -12.60992 -12.34169 -12.03860 -11.90852 -11.51482 -11.36905 -11.18955 -11.10000 -11.03206 -10.77348 -10.63381 -10.52189 -10.29852 -10.09088 -9.73741 -9.63332 -8.55654 -8.44261 -8.35405 -8.27158 -8.13394 -6.31358 -3.99533 1.08552 1.77342 2.20651 2.78141 3.46447 3.48658 3.67234 4.02445 4.54642 4.59592 4.64966 4.91160 5.04286 5.10112 5.27410 5.43992 5.45202 5.50081 5.53050 5.58041 5.59558 5.69973 5.79117 5.86192 5.88865 6.00337 6.12166 6.20050 6.26088 6.33205 6.40747 6.49727 6.56546 6.66352 6.69912 7.01296 7.19112 7.37250 7.50009 7.62657 8.28854 8.52075 8.94152 9.72407 11.09235 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022185 B = 0.004270 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.817841 B = 6555.943139 C = 7134.525833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.079 3.921 3 H 0.036 0.964 4 C -0.092 4.092 5 C 0.011 3.989 6 C -0.599 4.599 7 H 0.047 0.953 8 C 0.014 3.986 9 N -0.915 5.915 10 Si 1.068 2.932 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.283 1.283 14 N -0.520 5.520 15 C 0.042 3.958 16 C -0.141 4.141 17 C -0.119 4.119 18 C 0.136 3.864 19 H 0.071 0.929 20 C -0.138 4.138 21 C -0.156 4.156 22 C -0.133 4.133 23 C -0.239 4.239 24 S 0.145 5.855 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.002 0.998 31 H 0.010 0.990 32 H 0.268 0.732 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 -3.560 20.758 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.054 0.946 4 C -0.130 4.130 5 C -0.027 4.027 6 C -0.637 4.637 7 H 0.066 0.934 8 C -0.190 4.190 9 N -0.552 5.552 10 Si 0.896 3.104 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.208 1.208 14 N -0.245 5.245 15 C -0.086 4.086 16 C -0.180 4.180 17 C -0.157 4.157 18 C 0.026 3.974 19 H 0.089 0.911 20 C -0.257 4.257 21 C -0.187 4.187 22 C -0.164 4.164 23 C -0.375 4.375 24 S 0.409 5.591 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.028 0.972 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.364 -5.164 18.594 19.301 hybrid contribution -0.937 1.893 2.120 2.992 sum -1.301 -3.272 20.714 21.011 Atomic orbital electron populations 1.21934 0.94636 1.02291 1.01179 1.21977 0.95564 0.95228 0.90079 0.94633 1.21560 0.99538 0.99296 0.92593 1.19240 0.96191 0.94808 0.92445 1.22066 1.34396 1.14132 0.93116 0.93433 1.25829 0.96024 0.95860 1.01246 1.70781 1.31151 1.19565 1.33657 0.83565 0.75770 0.75432 0.75624 1.21450 1.21519 1.20816 1.63548 1.05925 1.53826 1.01184 1.22809 0.88075 1.01160 0.96525 1.22810 0.97968 1.01049 0.96167 1.22768 0.93471 1.02558 0.96953 1.20924 0.90490 0.95382 0.90571 0.91140 1.24411 0.99186 0.96776 1.05300 1.20009 0.93025 1.00857 1.04790 1.20031 1.00389 0.92260 1.03705 1.25716 1.01395 1.00821 1.09549 1.84432 1.09608 1.04087 1.61009 0.91755 0.92229 0.93471 0.92591 0.93163 0.97969 0.97211 0.92206 0.90485 0.91776 0.90688 0.91457 0.90505 0.90795 0.84969 0.84969 0.82477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.06 37.15 0.30 -2.17 16 2 C 0.08 1.40 1.69 -67.72 -0.11 1.28 16 3 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 4 C -0.09 -1.96 4.63 -26.73 -0.12 -2.09 16 5 C 0.01 0.28 3.92 -27.88 -0.11 0.17 16 6 C -0.60 -17.46 9.11 -34.44 -0.31 -17.77 16 7 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 8 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 9 N -0.91 -28.55 13.65 55.43 0.76 -27.79 16 10 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 N -0.52 -7.81 4.51 -216.85 -0.98 -8.79 16 15 C 0.04 0.57 6.08 -2.84 -0.02 0.56 16 16 C -0.14 -1.51 6.94 -24.91 -0.17 -1.69 16 17 C -0.12 -1.27 6.48 -24.59 -0.16 -1.43 16 18 C 0.14 1.75 2.23 -67.34 -0.15 1.60 16 19 H 0.07 0.93 7.38 -51.93 -0.38 0.55 16 20 C -0.14 -1.76 3.82 -36.00 -0.14 -1.90 16 21 C -0.16 -1.84 9.42 -41.21 -0.39 -2.23 16 22 C -0.13 -1.47 10.18 -41.21 -0.42 -1.89 16 23 C -0.24 -2.66 11.23 29.04 0.33 -2.34 16 24 S 0.14 1.82 23.12 -107.50 -2.49 -0.66 16 25 H 0.06 1.20 6.71 -51.93 -0.35 0.85 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.72 5.57 -51.93 -0.29 0.43 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.07 6.62 -51.93 -0.34 0.73 16 30 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 31 H 0.01 0.26 6.72 -51.93 -0.35 -0.09 16 32 H 0.27 8.32 7.22 -40.82 -0.29 8.02 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.96 6.64 -51.92 -0.34 0.62 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -31.09 333.55 -10.96 -42.05 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.62 Total: -0.98 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -1.58 Total: -29.58 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.22 Total: -36.58 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.49 Total: -0.66 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.09 -10.96 -42.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.531 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds