Wall clock time and date at job start Fri Apr 10 2020 17:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 109.47228 * 2 1 4 4 C 1.53003 * 109.47115 * 240.00319 * 2 1 3 5 5 C 1.53004 * 109.46997 * 65.62612 * 4 2 1 6 6 C 1.50707 * 109.46715 * 174.62382 * 5 4 2 7 7 H 1.08002 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99568 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00070 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00013 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47300 * 59.99269 * 10 8 6 12 12 H 1.48510 * 109.46854 * 299.99814 * 10 8 6 13 13 H 1.48498 * 109.47401 * 180.02562 * 10 8 6 14 14 N 1.46895 * 109.47663 * 120.00408 * 2 1 3 15 15 C 1.47437 * 111.00697 * 183.91480 * 14 2 1 16 16 C 1.54313 * 107.23757 * 123.25239 * 15 14 2 17 17 C 1.55143 * 103.01816 * 22.28734 * 16 15 14 18 18 C 1.47850 * 110.99924 * 304.75685 * 14 2 1 19 19 H 1.08999 * 110.37090 * 332.46437 * 18 14 2 20 20 C 1.50702 * 110.37569 * 94.80194 * 18 14 2 21 21 C 1.33385 * 125.20734 * 219.72629 * 20 18 14 22 22 C 1.38425 * 114.92160 * 179.86014 * 21 20 18 23 23 C 1.33388 * 114.91977 * 0.42891 * 22 21 20 24 24 S 1.75880 * 109.59551 * 359.76995 * 23 22 21 25 25 H 1.08994 * 109.47531 * 59.99921 * 1 2 3 26 26 H 1.09005 * 109.47289 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47134 * 299.99666 * 1 2 3 28 28 H 1.08998 * 109.46935 * 305.62887 * 4 2 1 29 29 H 1.08999 * 109.47204 * 185.62807 * 4 2 1 30 30 H 1.08992 * 109.47149 * 54.62703 * 5 4 2 31 31 H 1.09001 * 109.47116 * 294.62336 * 5 4 2 32 32 H 0.96998 * 120.00233 * 0.02562 * 9 8 6 33 33 H 1.09001 * 109.89126 * 242.66856 * 15 14 2 34 34 H 1.09008 * 109.88349 * 3.84742 * 15 14 2 35 35 H 1.09000 * 110.70553 * 140.66990 * 16 15 14 36 36 H 1.08996 * 110.70976 * 263.72940 * 16 15 14 37 37 H 1.08997 * 110.98801 * 82.43668 * 17 16 15 38 38 H 1.09003 * 110.98845 * 206.21749 * 17 16 15 39 39 H 1.08006 * 122.53639 * 0.02562 * 21 20 18 40 40 H 1.08002 * 122.53777 * 180.19395 * 22 21 20 41 41 H 1.07999 * 125.20206 * 179.79691 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6486 0.0772 -2.4945 6 6 2.2626 -0.5612 -3.7139 7 1 2.8713 -1.4473 -3.6109 8 6 2.0480 -0.0132 -4.9607 9 7 1.3072 1.0662 -5.0860 10 14 2.8083 -0.8047 -6.4723 11 1 2.3135 -2.1987 -6.6029 12 1 4.2870 -0.8153 -6.3346 13 1 2.4297 -0.0291 -7.6807 14 7 2.0197 -0.6925 1.1993 15 6 3.4905 -0.6314 1.2813 16 6 3.8464 0.0174 2.6354 17 6 2.5740 -0.2317 3.4875 18 6 1.4545 -0.0915 2.4262 19 1 1.2188 0.9597 2.2599 20 6 0.2231 -0.8442 2.8600 21 6 -0.8877 -0.2872 3.3450 22 6 -1.8923 -1.1807 3.6744 23 6 -1.5941 -2.4639 3.4652 24 16 0.0335 -2.5922 2.8111 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5966 -1.7156 -1.3012 29 1 3.1252 -0.8093 -1.2004 30 1 2.0112 1.1006 -2.3987 31 1 0.5633 0.0841 -2.5955 32 1 0.9120 1.4770 -4.3011 33 1 3.9069 -1.6375 1.2313 34 1 3.8824 -0.0246 0.4650 35 1 4.7114 -0.4728 3.0821 36 1 4.0299 1.0850 2.5150 37 1 2.5817 -1.2335 3.9169 38 1 2.4715 0.5241 4.2662 39 1 -0.9960 0.7803 3.4687 40 1 -2.8440 -0.8631 4.0741 41 1 -2.2516 -3.2967 3.6664 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:12 Heat of formation + Delta-G solvation = 1.467625 kcal Electronic energy + Delta-G solvation = -19920.169553 eV Core-core repulsion = 17118.056245 eV Total energy + Delta-G solvation = -2802.113308 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77797 -38.34697 -36.80310 -34.86229 -32.30215 -31.50293 -29.48486 -28.25740 -26.65515 -24.79596 -24.08726 -22.41833 -21.81889 -20.85901 -20.05733 -19.00887 -18.05358 -16.99196 -16.55179 -16.07782 -15.93446 -15.64215 -15.14501 -14.64595 -14.45007 -14.29028 -14.08718 -13.66197 -13.57808 -13.49869 -13.13665 -12.96145 -12.69362 -12.63560 -12.31876 -12.21985 -12.08885 -11.97696 -11.94838 -11.69584 -11.62874 -11.50194 -11.42674 -10.65431 -10.53805 -9.43809 -9.42528 -9.21507 -8.69663 -6.39572 0.18425 0.85901 1.30607 1.51142 1.59890 1.79444 1.90491 2.55786 2.86608 3.15241 3.59221 3.69441 3.88976 4.01853 4.07498 4.13859 4.27462 4.30777 4.36274 4.54996 4.64211 4.67619 4.71466 4.75768 4.79956 4.84180 4.89811 4.93249 5.00295 5.02603 5.08265 5.20382 5.24500 5.30076 5.41014 5.46619 5.54405 5.64215 5.97556 6.02582 6.10931 6.18405 6.58093 7.42140 8.71033 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022185 B = 0.004270 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.817841 B = 6555.943139 C = 7134.525833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.092 3.908 3 H 0.028 0.972 4 C -0.077 4.077 5 C 0.016 3.984 6 C -0.619 4.619 7 H 0.047 0.953 8 C -0.038 4.038 9 N -0.937 5.937 10 Si 1.117 2.883 11 H -0.270 1.270 12 H -0.268 1.268 13 H -0.282 1.282 14 N -0.525 5.525 15 C 0.036 3.964 16 C -0.132 4.132 17 C -0.111 4.111 18 C 0.134 3.866 19 H 0.069 0.931 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.139 4.139 23 C -0.234 4.234 24 S 0.108 5.892 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.048 0.952 30 H -0.016 1.016 31 H -0.007 1.007 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 -4.074 22.195 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.016 4.016 3 H 0.046 0.954 4 C -0.115 4.115 5 C -0.022 4.022 6 C -0.657 4.657 7 H 0.066 0.934 8 C -0.235 4.235 9 N -0.575 5.575 10 Si 0.938 3.062 11 H -0.195 1.195 12 H -0.194 1.194 13 H -0.207 1.207 14 N -0.250 5.250 15 C -0.092 4.092 16 C -0.170 4.170 17 C -0.149 4.149 18 C 0.024 3.976 19 H 0.087 0.913 20 C -0.271 4.271 21 C -0.187 4.187 22 C -0.170 4.170 23 C -0.370 4.370 24 S 0.371 5.629 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.002 0.998 31 H 0.011 0.989 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.164 0.836 40 H 0.174 0.826 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.144 -5.682 20.071 20.860 hybrid contribution -1.055 2.051 1.731 2.884 sum -1.199 -3.631 21.802 22.135 Atomic orbital electron populations 1.21811 0.94284 1.01742 1.01100 1.21655 0.95672 0.94354 0.89963 0.95422 1.21320 0.99354 0.98269 0.92563 1.19136 0.94770 0.94270 0.94003 1.22502 1.34423 1.14258 0.94494 0.93439 1.27442 0.95611 0.95540 1.04952 1.70919 1.32651 1.20874 1.33033 0.82948 0.76130 0.75318 0.71835 1.19477 1.19353 1.20711 1.63475 1.06890 1.53615 1.00987 1.22868 0.87178 1.01214 0.97890 1.22770 0.98775 1.01256 0.94225 1.22751 0.92166 1.03309 0.96660 1.21008 0.91415 0.95084 0.90052 0.91295 1.24408 0.99592 0.96539 1.06529 1.20290 0.92721 1.01800 1.03877 1.20331 1.01166 0.92048 1.03412 1.25990 1.00500 1.01748 1.08746 1.84534 1.11500 1.04791 1.62033 0.93895 0.92939 0.91348 0.93559 0.93312 0.99821 0.98910 0.93657 0.90473 0.93603 0.88717 0.90939 0.90481 0.88689 0.83578 0.82636 0.80408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 8.06 71.98 0.58 -4.02 16 2 C 0.09 3.29 1.69 44.91 0.08 3.37 16 3 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 4 C -0.08 -3.38 4.63 30.60 0.14 -3.24 16 5 C 0.02 0.85 3.92 29.85 0.12 0.96 16 6 C -0.62 -36.73 9.11 25.60 0.23 -36.50 16 7 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 8 C -0.04 -2.29 5.46 84.65 0.46 -1.82 16 9 N -0.94 -59.63 13.65 21.45 0.29 -59.33 16 10 Si 1.12 51.51 29.90 68.60 2.05 53.56 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 N -0.53 -15.53 4.51 -839.98 -3.79 -19.32 16 15 C 0.04 0.96 6.08 86.65 0.53 1.49 16 16 C -0.13 -2.55 6.94 31.77 0.22 -2.33 16 17 C -0.11 -2.10 6.48 31.98 0.21 -1.89 16 18 C 0.13 3.25 2.23 44.64 0.10 3.35 16 19 H 0.07 1.70 7.38 -2.39 -0.02 1.69 16 20 C -0.15 -3.65 3.82 24.59 0.09 -3.56 16 21 C -0.16 -3.34 9.42 21.22 0.20 -3.15 16 22 C -0.14 -2.73 10.18 21.22 0.22 -2.51 16 23 C -0.23 -4.75 11.23 66.72 0.75 -4.00 16 24 S 0.11 2.62 23.12 -56.49 -1.31 1.31 16 25 H 0.04 1.65 6.71 -2.39 -0.02 1.64 16 26 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.07 2.06 5.57 -2.39 -0.01 2.05 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 2.13 6.62 -2.39 -0.02 2.11 16 30 H -0.02 -0.94 8.01 -2.39 -0.02 -0.96 16 31 H -0.01 -0.42 6.72 -2.39 -0.02 -0.44 16 32 H 0.25 16.39 7.22 -92.71 -0.67 15.72 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 34 H 0.05 1.38 6.64 -2.38 -0.02 1.37 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -67.50 333.55 2.26 -65.24 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.09 Total: 12.40 kcal Atomic # 6 Polarization: -57.78 SS G_CDS: 3.92 Total: -53.85 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -3.49 Total: -78.65 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.05 Total: 53.56 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.31 Total: 1.31 kcal Total: -67.50 2.26 -65.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.704 kcal (2) G-P(sol) polarization free energy of solvation -67.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds