Wall clock time and date at job start Fri Apr 10 2020 17:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47008 * 2 1 4 4 C 1.52995 * 109.46910 * 120.00286 * 2 1 3 5 5 C 1.52999 * 109.46991 * 195.53674 * 4 2 1 6 6 C 1.50700 * 109.47280 * 173.65772 * 5 4 2 7 7 H 1.08008 * 119.99973 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00132 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00455 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99783 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47057 * 90.00284 * 10 8 6 12 12 H 1.48497 * 109.47275 * 329.99767 * 10 8 6 13 13 H 1.48497 * 109.46924 * 209.99945 * 10 8 6 14 14 N 1.46905 * 109.47277 * 240.00082 * 2 1 3 15 15 C 1.47841 * 111.00129 * 184.00811 * 14 2 1 16 16 C 1.54904 * 104.79584 * 213.64064 * 15 14 2 17 17 C 1.55139 * 101.65632 * 37.06571 * 16 15 14 18 18 C 1.47443 * 110.99541 * 63.16455 * 14 2 1 19 19 H 1.09006 * 109.88688 * 242.66333 * 18 14 2 20 20 C 1.50695 * 109.89146 * 3.68804 * 18 14 2 21 21 C 1.33390 * 125.20314 * 240.31467 * 20 18 14 22 22 C 1.38429 * 114.91950 * 179.86552 * 21 20 18 23 23 C 1.33392 * 114.91719 * 0.42366 * 22 21 20 24 24 S 1.75880 * 109.59650 * 359.77970 * 23 22 21 25 25 H 1.09007 * 109.47065 * 85.31902 * 1 2 3 26 26 H 1.09005 * 109.47275 * 205.31381 * 1 2 3 27 27 H 1.08994 * 109.47389 * 325.32177 * 1 2 3 28 28 H 1.09007 * 109.47525 * 75.54004 * 4 2 1 29 29 H 1.08997 * 109.47603 * 315.53796 * 4 2 1 30 30 H 1.08999 * 109.47165 * 53.66205 * 5 4 2 31 31 H 1.08998 * 109.47399 * 293.65653 * 5 4 2 32 32 H 0.97004 * 119.99714 * 359.97438 * 9 8 6 33 33 H 1.08997 * 110.37137 * 332.46656 * 15 14 2 34 34 H 1.08997 * 110.37316 * 94.80562 * 15 14 2 35 35 H 1.08999 * 110.98683 * 278.97753 * 16 15 14 36 36 H 1.09000 * 111.02574 * 155.18058 * 16 15 14 37 37 H 1.09000 * 110.70877 * 205.96461 * 17 16 15 38 38 H 1.09002 * 110.70549 * 82.73240 * 17 16 15 39 39 H 1.07995 * 122.54290 * 0.02562 * 21 20 18 40 40 H 1.07997 * 122.53964 * 180.20516 * 22 21 20 41 41 H 1.08003 * 125.19565 * 179.79653 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5202 -0.3955 1.4576 6 6 3.9829 -0.9770 2.7687 7 1 3.2904 -1.5246 3.3909 8 6 5.2901 -0.8099 3.1739 9 7 6.1332 -0.1427 2.4167 10 14 5.8636 -1.5314 4.7988 11 1 6.3695 -2.9099 4.5773 12 1 4.7262 -1.5689 5.7528 13 1 6.9511 -0.6890 5.3581 14 7 2.0197 -0.6925 -1.1995 15 6 3.4944 -0.7963 -1.1864 16 6 3.9115 -0.6936 -2.6747 17 6 2.8946 0.3465 -3.2141 18 6 1.6100 0.0187 -2.4244 19 1 0.9592 -0.6187 -3.0230 20 6 0.8884 1.2909 -2.0615 21 6 -0.3690 1.5841 -2.3965 22 6 -0.8205 2.8135 -1.9482 23 6 0.0732 3.5223 -1.2566 24 16 1.5779 2.6196 -1.1381 25 1 -0.3633 0.0839 -1.0243 26 1 -0.3634 -0.9290 0.4394 27 1 -0.3634 0.8450 0.5847 28 1 1.9191 -1.7972 1.1224 29 1 1.4696 -0.3915 2.1175 30 1 3.6557 0.6860 1.4719 31 1 4.1048 -0.8242 0.6436 32 1 5.8355 0.2316 1.5728 33 1 3.9275 0.0237 -0.6135 34 1 3.8036 -1.7554 -0.7709 35 1 3.7945 -1.6523 -3.1799 36 1 4.9334 -0.3265 -2.7700 37 1 2.7348 0.2105 -4.2837 38 1 3.2305 1.3610 -2.9995 39 1 -0.9887 0.9123 -2.9717 40 1 -1.8194 3.1730 -2.1464 41 1 -0.1009 4.5008 -0.8338 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:17 Heat of formation + Delta-G solvation = 56.113117 kcal Electronic energy + Delta-G solvation = -20715.512625 eV Core-core repulsion = 17915.768924 eV Total energy + Delta-G solvation = -2799.743702 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.08388 -37.37533 -34.86160 -33.10683 -31.39165 -29.40379 -28.37652 -27.21644 -24.57922 -23.72298 -22.38023 -21.09578 -20.53611 -20.11207 -18.78581 -17.06264 -16.54814 -16.07821 -15.55901 -14.99578 -14.33263 -13.69845 -13.47106 -13.31959 -13.18189 -12.80930 -12.65654 -12.45046 -12.30579 -11.98458 -11.79185 -11.53476 -11.21912 -11.17172 -10.96549 -10.83744 -10.72895 -10.61608 -10.48879 -10.22847 -10.07363 -9.73846 -9.34102 -8.62807 -8.34908 -8.22629 -8.17975 -7.65803 -6.30115 -3.97029 1.04606 1.69854 2.09715 2.77293 3.46301 3.49930 3.65612 4.30797 4.58758 4.61691 4.79017 4.91113 5.09839 5.27403 5.46484 5.50654 5.54145 5.56940 5.60302 5.66381 5.74021 5.88173 5.90729 6.04325 6.09501 6.17477 6.21813 6.31639 6.39714 6.40421 6.47188 6.51341 6.53250 6.58573 6.88921 7.03187 7.34586 7.39861 7.49827 7.71906 8.31550 8.53720 8.96217 9.73397 11.10390 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.005376 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.971524 B = 5207.456982 C = 5615.265876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.062 3.938 3 H 0.055 0.945 4 C -0.097 4.097 5 C -0.016 4.016 6 C -0.596 4.596 7 H 0.046 0.954 8 C 0.014 3.986 9 N -0.916 5.916 10 Si 1.069 2.931 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.285 1.285 14 N -0.508 5.508 15 C 0.034 3.966 16 C -0.134 4.134 17 C -0.135 4.135 18 C 0.136 3.864 19 H 0.098 0.902 20 C -0.175 4.175 21 C -0.142 4.142 22 C -0.135 4.135 23 C -0.236 4.236 24 S 0.132 5.868 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.000 1.000 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.227 4.396 -12.493 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.047 4.047 3 H 0.072 0.928 4 C -0.135 4.135 5 C -0.052 4.052 6 C -0.635 4.635 7 H 0.064 0.936 8 C -0.189 4.189 9 N -0.553 5.553 10 Si 0.897 3.103 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.211 1.211 14 N -0.232 5.232 15 C -0.092 4.092 16 C -0.172 4.172 17 C -0.174 4.174 18 C 0.027 3.973 19 H 0.116 0.884 20 C -0.293 4.293 21 C -0.173 4.173 22 C -0.166 4.166 23 C -0.371 4.371 24 S 0.397 5.603 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.738 4.043 -10.793 14.463 hybrid contribution -2.551 0.786 -1.425 3.026 sum -11.289 4.829 -12.218 17.321 Atomic orbital electron populations 1.22332 0.95125 1.01002 1.02847 1.22549 0.94818 0.96495 0.90815 0.92780 1.21585 0.98925 0.99333 0.93623 1.19923 0.91417 0.95718 0.98166 1.22129 0.98045 1.37632 1.05680 0.93610 1.25782 0.93416 0.95877 1.03856 1.70765 1.37463 1.33868 1.13211 0.83550 0.75535 0.76158 0.75009 1.21517 1.21605 1.21098 1.64074 1.11087 1.47198 1.00887 1.23684 0.87124 1.03364 0.95069 1.22814 0.98734 0.98955 0.96712 1.22921 0.94690 0.99847 0.99959 1.21161 0.95389 0.87930 0.92866 0.88436 1.24966 0.98934 1.00013 1.05431 1.19958 0.95039 0.98030 1.04230 1.20028 1.00597 0.95039 1.00962 1.25805 0.98871 1.04556 1.07886 1.84720 1.15643 1.08049 1.51867 0.90826 0.92949 0.93308 0.92482 0.92835 0.98190 0.94561 0.92286 0.91091 0.89215 0.90876 0.90733 0.90694 0.91266 0.84602 0.84866 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.23 37.16 0.31 -2.18 16 2 C 0.06 1.12 1.67 -67.71 -0.11 1.01 16 3 H 0.06 1.02 3.80 -23.86 -0.09 0.93 16 4 C -0.10 -2.10 4.45 -26.73 -0.12 -2.22 16 5 C -0.02 -0.40 2.93 -27.88 -0.08 -0.49 16 6 C -0.60 -17.26 9.11 -34.44 -0.31 -17.57 16 7 H 0.05 1.32 7.74 -52.48 -0.41 0.92 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 9 N -0.92 -28.11 13.65 55.43 0.76 -27.35 16 10 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.51 -8.51 5.03 -216.81 -1.09 -9.60 16 15 C 0.03 0.61 4.49 -2.30 -0.01 0.60 16 16 C -0.13 -1.86 7.08 -24.59 -0.17 -2.04 16 17 C -0.14 -1.73 6.45 -24.91 -0.16 -1.89 16 18 C 0.14 1.89 3.35 -67.88 -0.23 1.66 16 19 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 20 C -0.17 -2.36 2.60 -36.00 -0.09 -2.45 16 21 C -0.14 -1.69 7.81 -41.21 -0.32 -2.02 16 22 C -0.14 -1.54 10.18 -41.20 -0.42 -1.96 16 23 C -0.24 -2.85 11.23 29.04 0.33 -2.53 16 24 S 0.13 1.90 19.07 -107.50 -2.05 -0.15 16 25 H 0.07 1.07 3.80 -51.93 -0.20 0.87 16 26 H 0.05 0.84 7.91 -51.93 -0.41 0.43 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 29 H 0.05 1.18 8.04 -51.93 -0.42 0.77 16 30 H 0.00 0.00 7.90 -51.93 -0.41 -0.41 16 31 H 0.04 0.92 3.80 -51.93 -0.20 0.73 16 32 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 33 H 0.07 1.44 5.54 -51.93 -0.29 1.15 16 34 H 0.09 1.75 7.31 -51.93 -0.38 1.37 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.92 7.25 -51.93 -0.38 0.55 16 39 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -30.68 317.29 -10.25 -40.93 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.07 Total: 2.42 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: -1.50 Total: -31.77 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.33 Total: -36.95 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.05 Total: -0.15 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.68 -10.25 -40.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.046 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds