Wall clock time and date at job start Fri Apr 10 2020 17:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47008 * 2 1 4 4 C 1.52995 * 109.46910 * 120.00286 * 2 1 3 5 5 C 1.52999 * 109.46991 * 195.53674 * 4 2 1 6 6 C 1.50700 * 109.47280 * 173.65772 * 5 4 2 7 7 H 1.08008 * 119.99973 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00132 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00455 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99783 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47057 * 90.00284 * 10 8 6 12 12 H 1.48497 * 109.47275 * 329.99767 * 10 8 6 13 13 H 1.48497 * 109.46924 * 209.99945 * 10 8 6 14 14 N 1.46905 * 109.47277 * 240.00082 * 2 1 3 15 15 C 1.47841 * 111.00129 * 184.00811 * 14 2 1 16 16 C 1.54904 * 104.79584 * 213.64064 * 15 14 2 17 17 C 1.55139 * 101.65632 * 37.06571 * 16 15 14 18 18 C 1.47443 * 110.99541 * 63.16455 * 14 2 1 19 19 H 1.09006 * 109.88688 * 242.66333 * 18 14 2 20 20 C 1.50695 * 109.89146 * 3.68804 * 18 14 2 21 21 C 1.33390 * 125.20314 * 240.31467 * 20 18 14 22 22 C 1.38429 * 114.91950 * 179.86552 * 21 20 18 23 23 C 1.33392 * 114.91719 * 0.42366 * 22 21 20 24 24 S 1.75880 * 109.59650 * 359.77970 * 23 22 21 25 25 H 1.09007 * 109.47065 * 85.31902 * 1 2 3 26 26 H 1.09005 * 109.47275 * 205.31381 * 1 2 3 27 27 H 1.08994 * 109.47389 * 325.32177 * 1 2 3 28 28 H 1.09007 * 109.47525 * 75.54004 * 4 2 1 29 29 H 1.08997 * 109.47603 * 315.53796 * 4 2 1 30 30 H 1.08999 * 109.47165 * 53.66205 * 5 4 2 31 31 H 1.08998 * 109.47399 * 293.65653 * 5 4 2 32 32 H 0.97004 * 119.99714 * 359.97438 * 9 8 6 33 33 H 1.08997 * 110.37137 * 332.46656 * 15 14 2 34 34 H 1.08997 * 110.37316 * 94.80562 * 15 14 2 35 35 H 1.08999 * 110.98683 * 278.97753 * 16 15 14 36 36 H 1.09000 * 111.02574 * 155.18058 * 16 15 14 37 37 H 1.09000 * 110.70877 * 205.96461 * 17 16 15 38 38 H 1.09002 * 110.70549 * 82.73240 * 17 16 15 39 39 H 1.07995 * 122.54290 * 0.02562 * 21 20 18 40 40 H 1.07997 * 122.53964 * 180.20516 * 22 21 20 41 41 H 1.08003 * 125.19565 * 179.79653 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5202 -0.3955 1.4576 6 6 3.9829 -0.9770 2.7687 7 1 3.2904 -1.5246 3.3909 8 6 5.2901 -0.8099 3.1739 9 7 6.1332 -0.1427 2.4167 10 14 5.8636 -1.5314 4.7988 11 1 6.3695 -2.9099 4.5773 12 1 4.7262 -1.5689 5.7528 13 1 6.9511 -0.6890 5.3581 14 7 2.0197 -0.6925 -1.1995 15 6 3.4944 -0.7963 -1.1864 16 6 3.9115 -0.6936 -2.6747 17 6 2.8946 0.3465 -3.2141 18 6 1.6100 0.0187 -2.4244 19 1 0.9592 -0.6187 -3.0230 20 6 0.8884 1.2909 -2.0615 21 6 -0.3690 1.5841 -2.3965 22 6 -0.8205 2.8135 -1.9482 23 6 0.0732 3.5223 -1.2566 24 16 1.5779 2.6196 -1.1381 25 1 -0.3633 0.0839 -1.0243 26 1 -0.3634 -0.9290 0.4394 27 1 -0.3634 0.8450 0.5847 28 1 1.9191 -1.7972 1.1224 29 1 1.4696 -0.3915 2.1175 30 1 3.6557 0.6860 1.4719 31 1 4.1048 -0.8242 0.6436 32 1 5.8355 0.2316 1.5728 33 1 3.9275 0.0237 -0.6135 34 1 3.8036 -1.7554 -0.7709 35 1 3.7945 -1.6523 -3.1799 36 1 4.9334 -0.3265 -2.7700 37 1 2.7348 0.2105 -4.2837 38 1 3.2305 1.3610 -2.9995 39 1 -0.9887 0.9123 -2.9717 40 1 -1.8194 3.1730 -2.1464 41 1 -0.1009 4.5008 -0.8338 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:16 Heat of formation + Delta-G solvation = 38.018303 kcal Electronic energy + Delta-G solvation = -20716.297275 eV Core-core repulsion = 17915.768924 eV Total energy + Delta-G solvation = -2800.528352 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32850 -38.41478 -36.54069 -34.94770 -32.78154 -30.96094 -29.73432 -28.34272 -26.57040 -24.82475 -23.96300 -22.51816 -22.06095 -21.24564 -19.91019 -18.74482 -18.23646 -17.28384 -16.72881 -16.08208 -15.77234 -15.57542 -14.94368 -14.82629 -14.65604 -14.17465 -14.01691 -13.74596 -13.61744 -13.42904 -13.00809 -12.90404 -12.72560 -12.51911 -12.35285 -12.18597 -12.10216 -12.04938 -11.98551 -11.83957 -11.62570 -11.36976 -11.14750 -10.56931 -10.39009 -9.69737 -9.31072 -8.89187 -8.67209 -6.35505 0.07796 0.69178 1.13341 1.49263 1.58802 1.76557 1.85957 2.55269 2.99980 3.17058 3.53871 3.69572 3.74018 4.08302 4.16280 4.21435 4.25472 4.44226 4.45305 4.53454 4.61911 4.66151 4.71256 4.82229 4.85136 4.86647 4.93280 4.97315 5.04701 5.07303 5.12605 5.21550 5.28972 5.32983 5.38045 5.47844 5.51129 5.63778 6.00872 6.04248 6.16865 6.21534 6.62122 7.44107 8.73225 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.005376 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.971524 B = 5207.456982 C = 5615.265876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.053 0.947 4 C -0.087 4.087 5 C -0.008 4.008 6 C -0.618 4.618 7 H 0.041 0.959 8 C -0.037 4.037 9 N -0.936 5.936 10 Si 1.117 2.883 11 H -0.271 1.271 12 H -0.273 1.273 13 H -0.281 1.281 14 N -0.512 5.512 15 C 0.036 3.964 16 C -0.126 4.126 17 C -0.128 4.128 18 C 0.134 3.866 19 H 0.121 0.879 20 C -0.184 4.184 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.228 4.228 24 S 0.054 5.946 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.043 0.957 30 H -0.028 1.028 31 H 0.036 0.964 32 H 0.254 0.746 33 H 0.034 0.966 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.356 4.146 -13.849 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.044 4.044 3 H 0.070 0.930 4 C -0.125 4.125 5 C -0.044 4.044 6 C -0.656 4.656 7 H 0.059 0.941 8 C -0.234 4.234 9 N -0.574 5.574 10 Si 0.938 3.062 11 H -0.196 1.196 12 H -0.198 1.198 13 H -0.207 1.207 14 N -0.236 5.236 15 C -0.092 4.092 16 C -0.164 4.164 17 C -0.167 4.167 18 C 0.025 3.975 19 H 0.139 0.861 20 C -0.302 4.302 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.363 4.363 24 S 0.318 5.682 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.062 0.938 30 H -0.009 1.009 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.077 0.923 39 H 0.182 0.818 40 H 0.183 0.817 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.892 3.796 -12.173 16.770 hybrid contribution -1.952 0.920 -1.053 2.401 sum -12.844 4.717 -13.226 19.030 Atomic orbital electron populations 1.22258 0.93045 1.00832 1.04134 1.22425 0.96353 0.95936 0.89639 0.93042 1.21425 0.96256 0.99177 0.95642 1.19837 0.94146 0.93540 0.96925 1.22574 0.98413 1.37671 1.06983 0.94098 1.27339 0.93855 0.95456 1.06782 1.70890 1.37942 1.35278 1.13303 0.82942 0.75778 0.76235 0.71211 1.19631 1.19834 1.20673 1.64025 1.09984 1.47924 1.01635 1.23400 0.88147 1.00295 0.97317 1.22770 0.99268 1.00465 0.93875 1.22907 0.93532 0.98670 1.01552 1.21302 0.96253 0.88376 0.91538 0.86127 1.24871 0.99503 0.99471 1.06376 1.20338 0.94308 0.98421 1.02960 1.20410 1.01633 0.94464 0.99676 1.26014 0.97089 1.05172 1.08046 1.85064 1.18575 1.10752 1.53835 0.88757 0.93208 0.93320 0.93304 0.93814 1.00939 0.94636 0.93623 0.94738 0.92012 0.89085 0.90618 0.87555 0.92336 0.81840 0.81712 0.80659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 8.23 71.98 0.59 -3.86 16 2 C 0.07 2.41 1.67 44.91 0.07 2.48 16 3 H 0.05 2.01 3.80 -20.23 -0.08 1.94 16 4 C -0.09 -3.94 4.45 30.59 0.14 -3.81 16 5 C -0.01 -0.43 2.93 29.85 0.09 -0.35 16 6 C -0.62 -37.10 9.11 25.60 0.23 -36.87 16 7 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 8 C -0.04 -2.23 5.46 84.65 0.46 -1.76 16 9 N -0.94 -59.40 13.65 21.45 0.29 -59.11 16 10 Si 1.12 52.25 29.90 68.60 2.05 54.30 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 14 N -0.51 -17.06 5.03 -839.87 -4.22 -21.28 16 15 C 0.04 1.33 4.49 86.77 0.39 1.72 16 16 C -0.13 -3.44 7.08 31.98 0.23 -3.22 16 17 C -0.13 -3.05 6.45 31.77 0.20 -2.85 16 18 C 0.13 3.46 3.35 44.51 0.15 3.61 16 19 H 0.12 2.60 8.10 -2.38 -0.02 2.58 16 20 C -0.18 -4.60 2.60 24.59 0.06 -4.54 16 21 C -0.13 -2.60 7.81 21.22 0.17 -2.43 16 22 C -0.13 -2.49 10.18 21.22 0.22 -2.28 16 23 C -0.23 -5.05 11.23 66.72 0.75 -4.30 16 24 S 0.05 1.54 19.07 -56.49 -1.08 0.46 16 25 H 0.09 2.47 3.80 -2.38 -0.01 2.46 16 26 H 0.05 1.53 7.91 -2.38 -0.02 1.51 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 30 H -0.03 -1.63 7.90 -2.39 -0.02 -1.65 16 31 H 0.04 1.94 3.80 -2.39 -0.01 1.93 16 32 H 0.25 16.33 7.22 -92.71 -0.67 15.66 16 33 H 0.03 1.51 5.54 -2.39 -0.01 1.50 16 34 H 0.06 2.56 7.31 -2.39 -0.02 2.55 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 1.53 7.25 -2.39 -0.02 1.52 16 39 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -68.80 317.29 1.84 -66.96 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 1.04 Total: 17.12 kcal Atomic # 6 Polarization: -62.20 SS G_CDS: 3.75 Total: -58.45 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -3.93 Total: -80.39 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 2.05 Total: 54.30 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.08 Total: 0.46 kcal Total: -68.80 1.84 -66.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.978 kcal (2) G-P(sol) polarization free energy of solvation -68.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds