Wall clock time and date at job start Fri Apr 10 2020 17:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81398 * 109.47493 * 2 1 4 4 C 1.81401 * 102.99755 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46946 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47488 * 55.88463 * 5 4 3 7 7 C 1.53001 * 109.47443 * 175.89123 * 5 4 3 8 8 N 1.46507 * 109.47100 * 295.88794 * 5 4 3 9 9 C 1.36941 * 119.99897 * 306.16623 * 8 5 4 10 10 H 1.08002 * 120.00090 * 35.61797 * 9 8 5 11 11 C 1.38807 * 120.00184 * 215.62506 * 9 8 5 12 12 N 1.31621 * 120.00460 * 214.87860 * 11 9 8 13 13 Si 1.86803 * 119.99927 * 34.87255 * 11 9 8 14 14 H 1.48499 * 109.47430 * 95.17025 * 13 11 9 15 15 H 1.48501 * 109.47205 * 215.17383 * 13 11 9 16 16 H 1.48507 * 109.47080 * 335.17004 * 13 11 9 17 17 C 1.46499 * 120.00186 * 126.16182 * 8 5 4 18 18 C 1.50706 * 109.47074 * 275.93171 * 17 8 5 19 19 C 1.38230 * 119.99923 * 269.72995 * 18 17 8 20 20 C 1.38238 * 119.99918 * 179.76681 * 19 18 17 21 21 C 1.38240 * 119.99825 * 0.50615 * 20 19 18 22 22 C 1.38234 * 119.99680 * 359.74138 * 21 20 19 23 23 C 1.38232 * 120.00499 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46648 * 300.00092 * 1 2 3 26 26 H 1.09000 * 109.47174 * 59.99787 * 1 2 3 27 27 H 1.09002 * 109.46648 * 239.99908 * 2 1 3 28 28 H 1.09000 * 109.47174 * 120.00213 * 2 1 3 29 29 H 1.08998 * 109.47377 * 60.00286 * 4 3 2 30 30 H 1.08997 * 109.47156 * 299.99886 * 4 3 2 31 31 H 1.08996 * 109.47085 * 64.17293 * 7 5 4 32 32 H 1.08990 * 109.47348 * 184.18186 * 7 5 4 33 33 H 1.08998 * 109.46579 * 304.18296 * 7 5 4 34 34 H 0.96995 * 120.00200 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.47090 * 155.93177 * 17 8 5 36 36 H 1.09002 * 109.46997 * 35.93133 * 17 8 5 37 37 H 1.08000 * 120.00071 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.00160 * 180.22449 * 20 19 18 39 39 H 1.07991 * 119.99952 * 179.72890 * 21 20 19 40 40 H 1.08010 * 119.99643 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.00259 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5056 -0.0008 5 6 4.6066 2.8813 -0.0002 6 1 4.2477 3.4598 0.8510 7 6 6.1236 2.7104 0.1025 8 7 4.2775 3.5851 -1.2424 9 6 4.5177 2.9887 -2.4514 10 1 4.3877 1.9224 -2.5629 11 6 4.9285 3.7546 -3.5337 12 7 4.5307 3.4434 -4.7492 13 14 6.0459 5.2273 -3.2653 14 1 7.4590 4.8212 -3.4740 15 1 5.6916 6.2998 -4.2293 16 1 5.8755 5.7318 -1.8790 17 6 3.6914 4.9267 -1.1910 18 6 2.2000 4.8166 -1.0045 19 6 1.3685 4.7529 -2.1070 20 6 0.0008 4.6470 -1.9359 21 6 -0.5361 4.6153 -0.6625 22 6 0.2951 4.6841 0.4399 23 6 1.6631 4.7852 0.2689 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.2399 0.9542 -0.8910 30 1 4.2406 0.9539 0.8890 31 1 6.4922 2.1967 -0.7853 32 1 6.5953 3.6901 0.1777 33 1 6.3637 2.1225 0.9883 34 1 4.8174 3.9789 -5.5054 35 1 3.9033 5.4517 -2.1224 36 1 4.1221 5.4796 -0.3561 37 1 1.7876 4.7825 -3.1019 38 1 -0.6485 4.5936 -2.7972 39 1 -1.6048 4.5370 -0.5289 40 1 -0.1244 4.6598 1.4349 41 1 2.3125 4.8394 1.1302 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173311355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:21 Heat of formation + Delta-G solvation = 42.943340 kcal Electronic energy + Delta-G solvation = -20676.270713 eV Core-core repulsion = 17875.955927 eV Total energy + Delta-G solvation = -2800.314786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.55979 -36.55696 -32.59522 -32.42747 -31.67791 -30.09360 -29.30307 -26.71541 -25.43477 -23.69386 -22.87631 -21.73049 -20.58533 -19.50615 -16.77773 -15.87819 -15.44788 -15.13764 -14.95744 -14.45366 -14.41014 -14.08952 -14.03426 -13.32769 -12.95944 -12.63420 -12.37143 -12.23749 -12.17977 -12.03418 -11.90762 -11.75315 -11.40399 -11.10962 -10.81855 -10.77132 -10.55762 -10.33169 -10.21232 -10.08555 -9.85836 -9.54932 -9.12680 -8.42000 -8.04919 -7.87075 -6.91554 -6.70872 -6.06027 -3.29394 2.15742 2.20269 2.42530 3.37437 3.37640 3.50701 3.55009 4.50354 4.58752 5.05844 5.21771 5.26551 5.31309 5.55506 5.58127 5.60846 5.65397 5.73675 5.86999 5.90303 5.93317 6.05150 6.07617 6.15725 6.22601 6.28878 6.30792 6.37468 6.41393 6.45344 6.64310 6.78832 6.82768 6.89687 6.99715 7.20962 7.29151 7.57740 7.83143 8.02048 8.40284 8.99465 9.73833 10.16433 11.09046 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.008576 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.516617 B = 3263.996522 C = 4002.829840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.112 4.112 3 S -0.208 6.208 4 C -0.096 4.096 5 C 0.188 3.812 6 H 0.058 0.942 7 C -0.152 4.152 8 N -0.580 5.580 9 C -0.260 4.260 10 H 0.074 0.926 11 C 0.048 3.952 12 N -0.875 5.875 13 Si 0.838 3.162 14 H -0.293 1.293 15 H -0.296 1.296 16 H -0.262 1.262 17 C 0.182 3.818 18 C -0.071 4.071 19 C -0.086 4.086 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.121 4.121 23 C -0.103 4.103 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 -1.367 10.489 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.261 4.261 3 S 0.020 5.980 4 C -0.246 4.246 5 C 0.080 3.920 6 H 0.076 0.924 7 C -0.213 4.213 8 N -0.300 5.300 9 C -0.388 4.388 10 H 0.092 0.908 11 C -0.154 4.154 12 N -0.514 5.514 13 Si 0.665 3.335 14 H -0.220 1.220 15 H -0.223 1.223 16 H -0.187 1.187 17 C 0.057 3.943 18 C -0.074 4.074 19 C -0.104 4.104 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.140 4.140 23 C -0.123 4.123 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.502 -0.458 10.284 12.175 hybrid contribution 1.446 -0.587 -0.120 1.565 sum -5.056 -1.045 10.163 11.399 Atomic orbital electron populations 1.21401 0.93075 1.01320 1.02861 1.23306 0.99785 0.99496 1.03492 1.87404 1.05459 1.07423 1.97729 1.23983 0.93925 1.03398 1.03292 1.20042 0.92253 0.90104 0.89633 0.92367 1.22151 0.97238 1.01044 1.00871 1.44040 1.68453 1.15815 1.01724 1.18455 1.40992 0.94298 0.85063 0.90826 1.25369 0.98274 0.96929 0.94783 1.70104 1.41195 1.40691 0.99384 0.87465 0.83559 0.84022 0.78435 1.22039 1.22258 1.18662 1.20260 0.86976 0.87533 0.99567 1.20801 0.97892 0.96187 0.92568 1.21025 0.92673 0.97673 0.99076 1.20980 0.95426 1.01435 0.96446 1.20814 0.98440 1.03243 0.93040 1.20798 0.93827 1.01785 0.97567 1.20756 0.94532 1.00631 0.96392 0.92324 0.92314 0.91766 0.90954 0.91680 0.89770 0.92128 0.91534 0.93208 0.94127 0.92858 0.91879 0.94213 0.86211 0.87489 0.87816 0.87745 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.92 37.16 0.37 -1.32 16 2 C -0.11 -1.68 6.66 37.16 0.25 -1.43 16 3 S -0.21 -3.71 18.68 -107.50 -2.01 -5.72 16 4 C -0.10 -1.71 5.22 37.16 0.19 -1.52 16 5 C 0.19 3.53 2.75 -67.93 -0.19 3.34 16 6 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 7 C -0.15 -2.66 9.30 37.16 0.35 -2.31 16 8 N -0.58 -12.72 1.69 -167.02 -0.28 -13.00 16 9 C -0.26 -6.68 8.64 -15.06 -0.13 -6.81 16 10 H 0.07 2.09 6.67 -52.49 -0.35 1.74 16 11 C 0.05 1.31 4.98 -17.43 -0.09 1.22 16 12 N -0.87 -25.29 13.97 55.49 0.78 -24.52 16 13 Si 0.84 20.59 26.29 -169.99 -4.47 16.13 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.30 -7.44 7.11 56.52 0.40 -7.03 16 16 H -0.26 -6.12 5.97 56.52 0.34 -5.79 16 17 C 0.18 3.86 3.97 -5.19 -0.02 3.84 16 18 C -0.07 -1.40 4.57 -104.62 -0.48 -1.88 16 19 C -0.09 -1.73 9.70 -39.58 -0.38 -2.11 16 20 C -0.12 -2.20 10.05 -39.58 -0.40 -2.60 16 21 C -0.14 -2.19 10.05 -39.58 -0.40 -2.59 16 22 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 23 C -0.10 -1.80 7.88 -39.58 -0.31 -2.11 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 28 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 29 H 0.08 1.69 6.61 -51.92 -0.34 1.34 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.28 7.68 -51.93 -0.40 0.88 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.06 1.46 4.50 -51.93 -0.23 1.22 16 36 H 0.04 0.78 8.04 -51.93 -0.42 0.37 16 37 H 0.12 2.68 8.06 -52.49 -0.42 2.25 16 38 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.10 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.10 1.43 8.06 -52.48 -0.42 1.01 16 41 H 0.10 1.71 8.03 -52.49 -0.42 1.29 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -27.85 339.64 -9.35 -37.19 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.85 Total: 3.42 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -1.64 Total: -18.62 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.49 Total: -37.52 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.47 Total: 16.13 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.01 Total: -5.72 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.85 -9.35 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173311355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.137 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds