Wall clock time and date at job start Fri Apr 10 2020 17:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81398 * 109.47493 * 2 1 4 4 C 1.81401 * 102.99755 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46946 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47488 * 55.88463 * 5 4 3 7 7 C 1.53001 * 109.47443 * 175.89123 * 5 4 3 8 8 N 1.46507 * 109.47100 * 295.88794 * 5 4 3 9 9 C 1.36941 * 119.99897 * 306.16623 * 8 5 4 10 10 H 1.08002 * 120.00090 * 35.61797 * 9 8 5 11 11 C 1.38807 * 120.00184 * 215.62506 * 9 8 5 12 12 N 1.31621 * 120.00460 * 214.87860 * 11 9 8 13 13 Si 1.86803 * 119.99927 * 34.87255 * 11 9 8 14 14 H 1.48499 * 109.47430 * 95.17025 * 13 11 9 15 15 H 1.48501 * 109.47205 * 215.17383 * 13 11 9 16 16 H 1.48507 * 109.47080 * 335.17004 * 13 11 9 17 17 C 1.46499 * 120.00186 * 126.16182 * 8 5 4 18 18 C 1.50706 * 109.47074 * 275.93171 * 17 8 5 19 19 C 1.38230 * 119.99923 * 269.72995 * 18 17 8 20 20 C 1.38238 * 119.99918 * 179.76681 * 19 18 17 21 21 C 1.38240 * 119.99825 * 0.50615 * 20 19 18 22 22 C 1.38234 * 119.99680 * 359.74138 * 21 20 19 23 23 C 1.38232 * 120.00499 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46648 * 300.00092 * 1 2 3 26 26 H 1.09000 * 109.47174 * 59.99787 * 1 2 3 27 27 H 1.09002 * 109.46648 * 239.99908 * 2 1 3 28 28 H 1.09000 * 109.47174 * 120.00213 * 2 1 3 29 29 H 1.08998 * 109.47377 * 60.00286 * 4 3 2 30 30 H 1.08997 * 109.47156 * 299.99886 * 4 3 2 31 31 H 1.08996 * 109.47085 * 64.17293 * 7 5 4 32 32 H 1.08990 * 109.47348 * 184.18186 * 7 5 4 33 33 H 1.08998 * 109.46579 * 304.18296 * 7 5 4 34 34 H 0.96995 * 120.00200 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.47090 * 155.93177 * 17 8 5 36 36 H 1.09002 * 109.46997 * 35.93133 * 17 8 5 37 37 H 1.08000 * 120.00071 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.00160 * 180.22449 * 20 19 18 39 39 H 1.07991 * 119.99952 * 179.72890 * 21 20 19 40 40 H 1.08010 * 119.99643 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.00259 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5056 -0.0008 5 6 4.6066 2.8813 -0.0002 6 1 4.2477 3.4598 0.8510 7 6 6.1236 2.7104 0.1025 8 7 4.2775 3.5851 -1.2424 9 6 4.5177 2.9887 -2.4514 10 1 4.3877 1.9224 -2.5629 11 6 4.9285 3.7546 -3.5337 12 7 4.5307 3.4434 -4.7492 13 14 6.0459 5.2273 -3.2653 14 1 7.4590 4.8212 -3.4740 15 1 5.6916 6.2998 -4.2293 16 1 5.8755 5.7318 -1.8790 17 6 3.6914 4.9267 -1.1910 18 6 2.2000 4.8166 -1.0045 19 6 1.3685 4.7529 -2.1070 20 6 0.0008 4.6470 -1.9359 21 6 -0.5361 4.6153 -0.6625 22 6 0.2951 4.6841 0.4399 23 6 1.6631 4.7852 0.2689 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.2399 0.9542 -0.8910 30 1 4.2406 0.9539 0.8890 31 1 6.4922 2.1967 -0.7853 32 1 6.5953 3.6901 0.1777 33 1 6.3637 2.1225 0.9883 34 1 4.8174 3.9789 -5.5054 35 1 3.9033 5.4517 -2.1224 36 1 4.1221 5.4796 -0.3561 37 1 1.7876 4.7825 -3.1019 38 1 -0.6485 4.5936 -2.7972 39 1 -1.6048 4.5370 -0.5289 40 1 -0.1244 4.6598 1.4349 41 1 2.3125 4.8394 1.1302 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173311355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:20 Heat of formation + Delta-G solvation = 30.300538 kcal Electronic energy + Delta-G solvation = -20676.818946 eV Core-core repulsion = 17875.955927 eV Total energy + Delta-G solvation = -2800.863019 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.01547 -38.16705 -34.36321 -33.56781 -33.37519 -31.48138 -30.93704 -28.14364 -27.19300 -25.29783 -24.14534 -23.13847 -22.03141 -21.19765 -18.55873 -17.34237 -16.98899 -16.72450 -16.67193 -15.90108 -15.65991 -15.56356 -15.40033 -14.82643 -14.72873 -14.10941 -14.00701 -13.82712 -13.60587 -13.43645 -13.28026 -13.01485 -12.95352 -12.69049 -12.40485 -12.25784 -12.17437 -11.82995 -11.73610 -11.56357 -11.51762 -11.34846 -10.52628 -10.47184 -9.43505 -9.28973 -8.70889 -8.16216 -8.15850 -5.34361 0.77943 0.81186 1.08938 1.37244 1.47131 1.53648 2.02756 2.51464 2.95398 3.25805 3.55534 4.08840 4.09001 4.18214 4.19780 4.28193 4.39965 4.43993 4.49815 4.57798 4.58655 4.62189 4.75995 4.86598 4.88221 4.90725 4.97821 5.02295 5.03853 5.06838 5.25061 5.27916 5.42708 5.45039 5.53722 5.85579 5.88568 5.99927 6.11752 6.32302 6.45168 7.07353 7.75718 8.20013 9.03566 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.008576 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.516617 B = 3263.996522 C = 4002.829840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 S -0.243 6.243 4 C -0.087 4.087 5 C 0.183 3.817 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.586 5.586 9 C -0.227 4.227 10 H 0.038 0.962 11 C -0.003 4.003 12 N -0.927 5.927 13 Si 0.895 3.105 14 H -0.301 1.301 15 H -0.307 1.307 16 H -0.240 1.240 17 C 0.179 3.821 18 C -0.083 4.083 19 C -0.113 4.113 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.113 4.113 23 C -0.100 4.100 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.257 0.743 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 -1.388 14.231 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.253 4.253 3 S -0.015 6.015 4 C -0.237 4.237 5 C 0.076 3.924 6 H 0.095 0.905 7 C -0.207 4.207 8 N -0.307 5.307 9 C -0.357 4.357 10 H 0.055 0.945 11 C -0.201 4.201 12 N -0.569 5.569 13 Si 0.723 3.277 14 H -0.230 1.230 15 H -0.235 1.235 16 H -0.164 1.164 17 C 0.054 3.946 18 C -0.086 4.086 19 C -0.132 4.132 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.131 4.131 23 C -0.120 4.120 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.136 0.864 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.769 -0.462 14.080 16.088 hybrid contribution 1.701 -0.679 -1.188 2.183 sum -6.069 -1.141 12.892 14.295 Atomic orbital electron populations 1.21388 0.91495 1.02872 1.02349 1.23366 1.00999 0.97039 1.03856 1.87388 1.05680 1.10713 1.97766 1.23846 0.94009 1.02698 1.03134 1.20278 0.93293 0.90351 0.88455 0.90466 1.22090 0.95970 1.01363 1.01309 1.44095 1.68956 1.16047 1.01587 1.18207 1.38288 0.92713 0.86453 0.94480 1.25783 1.00012 0.99688 0.94604 1.70201 1.43679 1.42840 1.00224 0.86543 0.81047 0.81085 0.79012 1.22957 1.23501 1.16356 1.20244 0.88568 0.86870 0.98940 1.20581 0.96666 0.97799 0.93542 1.20857 0.94287 1.00432 0.97621 1.21141 0.94360 1.01267 0.98150 1.21168 1.00217 1.01299 0.91995 1.21174 0.93100 0.99761 0.99114 1.20879 0.95651 0.99911 0.95509 0.89725 0.91475 0.93511 0.92272 0.89569 0.92887 0.89154 0.94112 0.93196 0.90576 0.93364 0.94554 0.92202 0.90168 0.86422 0.84555 0.84414 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 9.92 71.98 0.71 -2.18 16 2 C -0.10 -2.90 6.66 71.98 0.48 -2.42 16 3 S -0.24 -8.27 18.68 -56.49 -1.06 -9.33 16 4 C -0.09 -3.00 5.22 71.98 0.38 -2.62 16 5 C 0.18 6.56 2.75 44.99 0.12 6.69 16 6 H 0.08 2.51 7.89 -2.39 -0.02 2.49 16 7 C -0.15 -4.83 9.30 71.98 0.67 -4.16 16 8 N -0.59 -25.69 1.69 -682.32 -1.15 -26.84 16 9 C -0.23 -12.10 8.64 84.03 0.73 -11.37 16 10 H 0.04 2.24 6.67 -2.91 -0.02 2.22 16 11 C 0.00 -0.19 4.98 84.86 0.42 0.23 16 12 N -0.93 -56.79 13.97 21.65 0.30 -56.49 16 13 Si 0.90 44.28 26.29 68.60 1.80 46.09 16 14 H -0.30 -15.14 7.11 99.48 0.71 -14.44 16 15 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 16 H -0.24 -10.85 5.97 99.48 0.59 -10.26 16 17 C 0.18 7.53 3.97 85.64 0.34 7.87 16 18 C -0.08 -3.22 4.57 -19.86 -0.09 -3.31 16 19 C -0.11 -4.67 9.70 22.27 0.22 -4.46 16 20 C -0.13 -4.52 10.05 22.27 0.22 -4.30 16 21 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 22 C -0.11 -3.17 10.05 22.27 0.22 -2.95 16 23 C -0.10 -3.20 7.88 22.27 0.18 -3.03 16 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 2.15 6.61 -2.39 -0.02 2.13 16 30 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.04 1.54 7.68 -2.39 -0.02 1.52 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.04 1.71 4.50 -2.39 -0.01 1.70 16 36 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 37 H 0.08 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.14 3.05 8.06 -2.92 -0.02 3.03 16 40 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.12 3.45 8.03 -2.91 -0.02 3.43 16 Total: -1.00 -63.51 339.64 5.59 -57.92 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.86 Total: 18.12 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 4.82 Total: -29.47 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -0.85 Total: -83.33 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.80 Total: 46.09 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.06 Total: -9.33 kcal Total: -63.51 5.59 -57.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173311355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.221 kcal (2) G-P(sol) polarization free energy of solvation -63.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds