Wall clock time and date at job start Fri Apr 10 2020 17:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81396 * 109.47627 * 2 1 4 4 C 1.81399 * 103.00074 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46954 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47424 * 300.66376 * 5 4 3 7 7 C 1.53003 * 109.47209 * 180.66615 * 5 4 3 8 8 N 1.46504 * 109.46923 * 60.66602 * 5 4 3 9 9 C 1.36936 * 119.99925 * 54.08120 * 8 5 4 10 10 H 1.08001 * 119.99681 * 323.37647 * 9 8 5 11 11 C 1.38809 * 120.00135 * 143.38685 * 9 8 5 12 12 N 1.31617 * 120.00014 * 337.44462 * 11 9 8 13 13 Si 1.86802 * 119.99964 * 157.44159 * 11 9 8 14 14 H 1.48501 * 109.47217 * 89.99995 * 13 11 9 15 15 H 1.48503 * 109.47103 * 210.00304 * 13 11 9 16 16 H 1.48505 * 109.47158 * 329.99851 * 13 11 9 17 17 C 1.46497 * 119.99681 * 234.07193 * 8 5 4 18 18 C 1.50703 * 109.47125 * 90.00511 * 17 8 5 19 19 C 1.38235 * 119.99664 * 269.72520 * 18 17 8 20 20 C 1.38233 * 119.99469 * 179.76320 * 19 18 17 21 21 C 1.38238 * 120.00236 * 0.51002 * 20 19 18 22 22 C 1.38236 * 119.99856 * 359.73866 * 21 20 19 23 23 C 1.38235 * 119.99707 * 89.99236 * 18 17 8 24 24 H 1.09000 * 109.46921 * 300.00402 * 1 2 3 25 25 H 1.08999 * 109.46564 * 59.99649 * 1 2 3 26 26 H 1.08996 * 109.47267 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46921 * 239.99598 * 2 1 3 28 28 H 1.09005 * 109.46893 * 120.00098 * 2 1 3 29 29 H 1.09003 * 109.47289 * 60.00366 * 4 3 2 30 30 H 1.08993 * 109.47408 * 300.00079 * 4 3 2 31 31 H 1.08997 * 109.47133 * 305.56505 * 7 5 4 32 32 H 1.08999 * 109.46596 * 65.56210 * 7 5 4 33 33 H 1.08994 * 109.47394 * 185.56292 * 7 5 4 34 34 H 0.97005 * 120.00018 * 180.02562 * 12 11 9 35 35 H 1.09006 * 109.46868 * 210.00095 * 17 8 5 36 36 H 1.09001 * 109.47581 * 330.00112 * 17 8 5 37 37 H 1.07995 * 120.00183 * 359.97438 * 19 18 17 38 38 H 1.08002 * 120.00118 * 180.22914 * 20 19 18 39 39 H 1.08001 * 119.99876 * 179.72858 * 21 20 19 40 40 H 1.07997 * 119.99763 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00762 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.9373 1.5056 0.0008 5 6 4.6066 2.8814 0.0002 6 1 4.2947 3.4369 -0.8842 7 6 6.1268 2.7090 -0.0159 8 7 4.2114 3.6173 1.2038 9 6 4.3901 3.0551 2.4396 10 1 4.2417 1.9942 2.5768 11 6 4.7618 3.8489 3.5160 12 7 5.3634 5.0008 3.3074 13 14 4.4082 3.2822 5.2605 14 1 5.5582 2.4904 5.7664 15 1 4.2001 4.4658 6.1328 16 1 3.1852 2.4398 5.2690 17 6 3.6250 4.9545 1.0852 18 6 2.1269 4.8378 0.9703 19 6 1.5358 4.7265 -0.2743 20 6 0.1620 4.6145 -0.3793 21 6 -0.6214 4.6244 0.7596 22 6 -0.0306 4.7409 2.0039 23 6 1.3436 4.8476 2.1093 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.2407 0.9540 -0.8890 30 1 4.2400 0.9542 0.8909 31 1 6.4289 2.0704 0.8142 32 1 6.4304 2.2498 -0.9567 33 1 6.6042 3.6838 0.0833 34 1 5.6235 5.5554 4.0597 35 1 3.8771 5.5414 1.9685 36 1 4.0203 5.4471 0.1968 37 1 2.1474 4.7236 -1.1643 38 1 -0.2997 4.5238 -1.3514 39 1 -1.6951 4.5413 0.6773 40 1 -0.6427 4.7491 2.8937 41 1 1.8051 4.9393 3.0814 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173311357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:23 Heat of formation + Delta-G solvation = 26.303942 kcal Electronic energy + Delta-G solvation = -20661.079364 eV Core-core repulsion = 17860.043039 eV Total energy + Delta-G solvation = -2801.036325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.91228 -38.02261 -34.35948 -33.54189 -33.02686 -31.45303 -30.52797 -28.12862 -27.24396 -25.08282 -24.13827 -23.11182 -21.82382 -21.31408 -18.34293 -17.28951 -16.97066 -16.75102 -16.17745 -15.83357 -15.72737 -15.57346 -15.32261 -14.94881 -14.66268 -14.01897 -13.70086 -13.60109 -13.46091 -13.31799 -13.15144 -12.97601 -12.93051 -12.65071 -12.33902 -12.24957 -12.16179 -11.97251 -11.65859 -11.52992 -11.47175 -11.42158 -10.50617 -10.44722 -9.40960 -9.21935 -8.51164 -8.16414 -7.75549 -5.30523 0.79848 0.85084 1.10835 1.41016 1.46587 1.54300 2.04781 2.53701 3.17616 3.35725 3.77177 4.10082 4.14723 4.20782 4.25911 4.36014 4.44840 4.47408 4.52338 4.60001 4.65824 4.75507 4.81730 4.89109 4.91603 4.97037 4.98370 5.05197 5.10821 5.26269 5.31264 5.45255 5.47706 5.58227 5.70011 5.81231 5.88011 5.92595 6.21171 6.46133 6.58040 7.23946 7.92997 8.47042 9.20871 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.008678 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.000539 B = 3225.647867 C = 3802.861107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 S -0.242 6.242 4 C -0.085 4.085 5 C 0.181 3.819 6 H 0.063 0.937 7 C -0.134 4.134 8 N -0.569 5.569 9 C -0.223 4.223 10 H 0.045 0.955 11 C -0.029 4.029 12 N -0.912 5.912 13 Si 0.931 3.069 14 H -0.288 1.288 15 H -0.294 1.294 16 H -0.279 1.279 17 C 0.179 3.821 18 C -0.072 4.072 19 C -0.103 4.103 20 C -0.114 4.114 21 C -0.134 4.134 22 C -0.131 4.131 23 C -0.119 4.119 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.247 0.753 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.110 0.890 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.122 0.878 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 -5.626 -9.190 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.254 4.254 3 S -0.014 6.014 4 C -0.235 4.235 5 C 0.074 3.926 6 H 0.081 0.919 7 C -0.195 4.195 8 N -0.288 5.288 9 C -0.354 4.354 10 H 0.063 0.937 11 C -0.226 4.226 12 N -0.557 5.557 13 Si 0.761 3.239 14 H -0.215 1.215 15 H -0.220 1.220 16 H -0.205 1.205 17 C 0.053 3.947 18 C -0.075 4.075 19 C -0.123 4.123 20 C -0.132 4.132 21 C -0.152 4.152 22 C -0.149 4.149 23 C -0.138 4.138 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.140 0.860 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.783 -4.616 -9.080 14.123 hybrid contribution 1.100 -1.279 1.575 2.308 sum -8.683 -5.895 -7.505 12.902 Atomic orbital electron populations 1.21389 0.91550 1.02849 1.02350 1.23385 1.00937 0.97080 1.03989 1.87551 1.05539 1.10536 1.97802 1.23842 0.94090 1.02473 1.03120 1.20242 0.92555 0.90151 0.89700 0.91914 1.21980 0.96462 1.00595 1.00420 1.43779 1.68110 1.15832 1.01076 1.18779 1.37711 0.92800 0.86109 0.93695 1.25466 0.98583 0.98112 1.00416 1.70100 1.40895 1.14512 1.30171 0.85852 0.78030 0.77121 0.82937 1.21504 1.22041 1.20466 1.19831 0.86793 0.87952 1.00117 1.20732 0.97395 0.96198 0.93177 1.20842 0.95217 1.00180 0.96061 1.21154 0.93289 0.99865 0.98876 1.21147 1.00148 1.01880 0.92041 1.21171 0.94078 1.01253 0.98420 1.20851 0.94266 1.01278 0.97378 0.93324 0.91745 0.89684 0.89796 0.91770 0.89529 0.92415 0.94375 0.91307 0.94520 0.94311 0.91423 0.95168 0.87198 0.84752 0.84505 0.86027 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 9.92 71.98 0.71 -2.09 16 2 C -0.11 -2.84 6.66 71.98 0.48 -2.36 16 3 S -0.24 -8.29 18.46 -56.49 -1.04 -9.33 16 4 C -0.09 -3.00 5.17 71.98 0.37 -2.63 16 5 C 0.18 7.09 2.78 44.99 0.13 7.21 16 6 H 0.06 2.35 7.85 -2.39 -0.02 2.33 16 7 C -0.13 -5.03 9.18 71.98 0.66 -4.37 16 8 N -0.57 -26.48 1.91 -682.32 -1.31 -27.78 16 9 C -0.22 -11.62 8.47 84.03 0.71 -10.91 16 10 H 0.05 2.43 6.64 -2.91 -0.02 2.41 16 11 C -0.03 -1.56 4.93 84.86 0.42 -1.14 16 12 N -0.91 -51.98 11.48 21.65 0.25 -51.74 16 13 Si 0.93 44.88 29.61 68.60 2.03 46.92 16 14 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 15 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 16 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 17 C 0.18 8.33 5.37 85.63 0.46 8.79 16 18 C -0.07 -2.97 4.68 -19.87 -0.09 -3.06 16 19 C -0.10 -3.61 7.67 22.27 0.17 -3.44 16 20 C -0.11 -3.39 10.05 22.27 0.22 -3.17 16 21 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 22 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16 23 C -0.12 -4.95 9.70 22.27 0.22 -4.73 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.06 2.26 6.79 -2.39 -0.02 2.24 16 31 H 0.04 1.54 7.95 -2.39 -0.02 1.52 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 35 H 0.07 3.66 5.44 -2.38 -0.01 3.65 16 36 H 0.03 1.35 7.92 -2.39 -0.02 1.33 16 37 H 0.11 3.67 8.06 -2.91 -0.02 3.64 16 38 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 41 H 0.08 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -59.09 343.77 5.81 -53.28 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.97 Total: 18.55 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 4.91 Total: -29.90 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.06 Total: -79.52 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.04 Total: -9.33 kcal Total: -59.09 5.81 -53.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173311357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.586 kcal (2) G-P(sol) polarization free energy of solvation -59.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds