Wall clock time and date at job start Fri Apr 10 2020 17:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47281 * 2 1 4 4 C 1.53001 * 109.46754 * 120.00289 * 2 1 3 5 5 O 1.42902 * 109.47549 * 64.99881 * 4 2 1 6 6 C 1.35671 * 116.99949 * 179.97438 * 5 4 2 7 7 C 1.38950 * 120.01739 * 180.02562 * 6 5 4 8 8 N 1.32085 * 120.10430 * 179.97438 * 7 6 5 9 9 C 1.32034 * 120.15048 * 359.97438 * 8 7 6 10 10 C 1.39152 * 120.03849 * 0.02562 * 9 8 7 11 11 N 1.38996 * 120.05746 * 180.02562 * 10 9 8 12 12 C 1.46505 * 119.99415 * 359.97438 * 11 10 9 13 13 C 1.53000 * 109.47010 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47351 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47263 * 180.02562 * 14 13 12 16 16 H 1.07993 * 119.99938 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99851 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00260 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99754 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47308 * 59.99811 * 19 17 15 21 21 H 1.48501 * 109.47187 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46931 * 299.99664 * 19 17 15 23 23 N 1.32582 * 120.02015 * 359.97438 * 6 5 4 24 24 H 1.09000 * 109.46645 * 60.00205 * 1 2 3 25 25 H 1.08997 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47089 * 299.99831 * 1 2 3 27 27 H 1.08996 * 109.47085 * 239.99613 * 2 1 3 28 28 H 1.08999 * 109.47338 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47471 * 300.00104 * 3 2 1 30 30 H 1.09009 * 109.46902 * 60.00163 * 3 2 1 31 31 H 1.09003 * 109.47228 * 304.99572 * 4 2 1 32 32 H 1.09004 * 109.46949 * 184.99707 * 4 2 1 33 33 H 1.08007 * 119.94987 * 359.97438 * 7 6 5 34 34 H 1.08002 * 119.97631 * 179.97438 * 9 8 7 35 35 H 0.96998 * 120.00509 * 179.97438 * 11 10 9 36 36 H 1.08995 * 109.47281 * 300.00123 * 12 11 10 37 37 H 1.08999 * 109.46789 * 59.99959 * 12 11 10 38 38 H 1.09003 * 109.47187 * 299.99982 * 13 12 11 39 39 H 1.09002 * 109.46750 * 59.99836 * 13 12 11 40 40 H 1.09003 * 109.46859 * 300.00058 * 14 13 12 41 41 H 1.09004 * 109.47099 * 59.99714 * 14 13 12 42 42 H 0.96996 * 119.99824 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1920 6 6 2.0398 -2.8844 2.2311 7 6 1.7059 -4.2332 2.2397 8 7 2.0734 -5.0003 3.2502 9 6 2.7597 -4.4889 4.2556 10 6 3.0974 -3.1390 4.2533 11 7 3.8203 -2.6004 5.3113 12 6 4.2268 -3.4541 6.4304 13 6 5.0041 -2.6208 7.4513 14 6 5.4293 -3.5124 8.6197 15 6 6.1943 -2.6915 9.6256 16 1 6.3602 -1.6390 9.4494 17 6 6.6814 -3.2839 10.7714 18 7 6.4780 -4.5652 10.9867 19 14 7.6290 -2.2662 12.0186 20 1 6.7641 -1.1690 12.5219 21 1 8.0408 -3.1313 13.1532 22 1 8.8352 -1.6890 11.3725 23 7 2.7289 -2.3664 3.2385 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6054 -0.2618 2.1370 32 1 3.1263 -0.6445 1.2952 33 1 1.1450 -4.6550 1.4188 34 1 3.0584 -5.1186 5.0807 35 1 4.0556 -1.6594 5.3087 36 1 3.3415 -3.8774 6.9048 37 1 4.8613 -4.2597 6.0609 38 1 5.8895 -2.1978 6.9766 39 1 4.3699 -1.8149 7.8208 40 1 4.5441 -3.9357 9.0945 41 1 6.0635 -4.3180 8.2498 42 1 6.8204 -4.9819 11.7929 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086182439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:12 Heat of formation + Delta-G solvation = -35.265859 kcal Electronic energy + Delta-G solvation = -20690.471158 eV Core-core repulsion = 17476.304846 eV Total energy + Delta-G solvation = -3214.166311 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.22421 -39.87146 -37.90924 -36.31696 -35.74110 -34.61984 -33.05442 -30.66997 -28.38400 -28.05007 -27.67914 -25.45292 -24.99084 -23.56655 -22.15336 -21.25375 -19.43726 -19.10617 -18.42712 -17.67590 -17.46814 -16.98781 -16.48823 -16.46838 -16.09889 -15.71662 -15.39241 -14.85202 -14.39408 -14.25347 -13.87086 -13.73058 -13.70000 -13.49493 -13.03566 -12.82312 -12.65474 -12.57383 -12.52826 -12.40836 -12.37061 -12.05766 -11.77504 -11.63743 -11.56884 -11.48376 -11.21970 -10.53802 -10.43441 -10.32470 -8.80426 -8.19550 -6.29794 0.04112 0.23597 1.41702 1.43513 1.51394 1.72072 2.01433 2.42075 2.75936 3.14559 3.34038 3.53102 3.60612 3.78940 3.86386 4.08501 4.12363 4.21638 4.21742 4.43094 4.48473 4.53265 4.59370 4.66912 4.78656 4.92337 4.94750 4.97322 4.99198 5.10931 5.16404 5.17844 5.36876 5.38755 5.51295 5.67887 5.73316 5.85503 5.95923 6.23915 6.36876 6.52628 6.87073 6.91130 7.39359 8.91814 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.025210 B = 0.002623 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.415761 B =10671.822922 C =11660.154103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.143 4.143 4 C 0.071 3.929 5 O -0.297 6.297 6 C 0.321 3.679 7 C -0.041 4.041 8 N -0.383 5.383 9 C -0.065 4.065 10 C 0.394 3.606 11 N -0.701 5.701 12 C 0.133 3.867 13 C -0.104 4.104 14 C 0.026 3.974 15 C -0.544 4.544 16 H 0.060 0.940 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.961 3.039 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.268 1.268 23 N -0.576 5.576 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.193 0.807 34 H 0.176 0.824 35 H 0.410 0.590 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.061 0.939 40 H -0.001 1.001 41 H -0.001 1.001 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 8.400 -22.159 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.004 4.004 5 O -0.201 6.201 6 C 0.137 3.863 7 C -0.204 4.204 8 N -0.096 5.096 9 C -0.232 4.232 10 C 0.154 3.846 11 N -0.331 5.331 12 C 0.009 3.991 13 C -0.142 4.142 14 C -0.012 4.012 15 C -0.582 4.582 16 H 0.079 0.921 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.786 3.214 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.193 1.193 23 N -0.316 5.316 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.209 0.791 34 H 0.193 0.807 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.628 8.088 -22.131 25.849 hybrid contribution 0.840 0.737 1.176 1.623 sum -9.788 8.825 -20.954 24.754 Atomic orbital electron populations 1.21824 0.94020 1.02093 1.02405 1.21196 0.97188 0.96487 0.96187 1.21765 1.01393 0.93745 1.03129 1.22934 1.00013 0.77529 0.99915 1.86255 1.72710 1.22857 1.38324 1.20790 0.89286 0.90329 0.85845 1.22784 1.08374 0.88198 1.01080 1.68232 1.05440 1.36436 0.99504 1.23105 1.05846 0.92966 1.01239 1.19158 0.88737 0.89953 0.86764 1.44754 1.56632 1.13175 1.18561 1.21559 0.98939 0.93353 0.85239 1.21576 0.98995 0.98516 0.95112 1.18921 0.95134 0.94657 0.92461 1.21647 1.34976 0.96295 1.05264 0.92132 1.25927 0.97352 0.96073 1.00396 1.70068 1.47249 1.11993 1.27777 0.85560 0.79140 0.78524 0.78182 1.19293 1.21051 1.19276 1.67433 1.20917 1.39221 1.04062 0.91001 0.92820 0.92895 0.89821 0.92223 0.90355 0.92331 0.92174 0.92087 0.79057 0.80725 0.75389 0.91181 0.91183 0.92048 0.92051 0.98232 0.98220 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.09 71.98 0.65 -1.21 16 2 C -0.09 -1.24 3.16 -10.79 -0.03 -1.28 16 3 C -0.14 -1.51 9.19 71.98 0.66 -0.85 16 4 C 0.07 1.34 4.70 71.98 0.34 1.68 16 5 O -0.30 -6.60 9.66 -89.88 -0.87 -7.47 16 6 C 0.32 8.27 7.49 84.75 0.63 8.91 16 7 C -0.04 -1.01 11.16 84.83 0.95 -0.07 16 8 N -0.38 -10.70 10.48 -194.24 -2.04 -12.73 16 9 C -0.06 -1.81 10.48 84.88 0.89 -0.92 16 10 C 0.39 11.14 7.66 132.96 1.02 12.16 16 11 N -0.70 -18.88 5.73 -344.78 -1.98 -20.86 16 12 C 0.13 3.91 4.90 86.38 0.42 4.33 16 13 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 14 C 0.03 1.27 4.97 29.85 0.15 1.41 16 15 C -0.54 -29.56 9.11 25.60 0.23 -29.33 16 16 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 17 C 0.00 0.03 5.46 84.66 0.46 0.50 16 18 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 19 Si 0.96 43.13 29.54 68.60 2.03 45.15 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 N -0.58 -16.06 9.42 -305.57 -2.88 -18.94 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.78 7.82 -2.39 -0.02 0.77 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.62 16 31 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 32 H 0.06 1.21 8.11 -2.38 -0.02 1.19 16 33 H 0.19 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.18 4.50 6.71 -2.91 -0.02 4.48 16 35 H 0.41 10.33 8.60 -92.71 -0.80 9.53 16 36 H 0.07 2.04 7.94 -2.39 -0.02 2.02 16 37 H 0.07 2.04 7.94 -2.39 -0.02 2.02 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 42 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -62.54 352.84 1.29 -61.25 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.20 Total: 16.67 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 6.54 Total: -8.25 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -6.61 Total: -107.35 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.87 Total: -7.47 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -62.54 1.29 -61.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086182439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.988 kcal (2) G-P(sol) polarization free energy of solvation -62.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds