Wall clock time and date at job start Fri Apr 10 2020 17:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47226 * 2 1 4 4 C 1.52998 * 109.47003 * 120.00311 * 2 1 3 5 5 C 1.53002 * 109.46975 * 63.85505 * 4 2 1 6 6 N 1.46508 * 109.46815 * 183.15654 * 5 4 2 7 7 C 1.46502 * 119.99600 * 274.37212 * 6 5 4 8 8 C 1.50704 * 109.46787 * 276.57341 * 7 6 5 9 9 H 1.08001 * 120.00336 * 4.89258 * 8 7 6 10 10 C 1.37878 * 119.99829 * 184.88364 * 8 7 6 11 11 N 1.31513 * 120.00020 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99901 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47195 * 60.00863 * 12 10 8 14 14 H 1.48501 * 109.46937 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47305 * 300.00518 * 12 10 8 16 16 C 1.34773 * 119.99879 * 94.36848 * 6 5 4 17 17 O 1.21623 * 120.00212 * 1.71652 * 16 6 5 18 18 C 1.47162 * 119.99446 * 181.71147 * 16 6 5 19 19 C 1.38412 * 126.88566 * 242.41588 * 18 16 6 20 20 C 1.39668 * 105.35880 * 180.02562 * 19 18 16 21 21 N 1.30862 * 107.86622 * 0.02562 * 20 19 18 22 22 N 1.28450 * 110.92387 * 359.97438 * 21 20 19 23 23 C 1.46502 * 125.18720 * 179.73963 * 22 21 20 24 24 H 1.08998 * 109.46835 * 303.11526 * 1 2 3 25 25 H 1.09002 * 109.46859 * 63.11052 * 1 2 3 26 26 H 1.08993 * 109.47197 * 183.11153 * 1 2 3 27 27 H 1.09000 * 109.46731 * 240.00084 * 2 1 3 28 28 H 1.08999 * 109.47130 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47517 * 300.00037 * 3 2 1 30 30 H 1.09005 * 109.46920 * 59.99970 * 3 2 1 31 31 H 1.09004 * 109.47290 * 303.85429 * 4 2 1 32 32 H 1.08999 * 109.47085 * 183.85105 * 4 2 1 33 33 H 1.08994 * 109.47282 * 63.15878 * 5 4 2 34 34 H 1.08994 * 109.47113 * 303.15184 * 5 4 2 35 35 H 1.08997 * 109.47505 * 36.57773 * 7 6 5 36 36 H 1.09001 * 109.47167 * 156.57860 * 7 6 5 37 37 H 0.97003 * 119.99976 * 180.02562 * 11 10 8 38 38 H 1.07997 * 127.31755 * 359.97438 * 19 18 16 39 39 H 1.08003 * 126.06689 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47332 * 97.74424 * 23 22 21 41 41 H 1.09001 * 109.47208 * 217.74447 * 23 22 21 42 42 H 1.08999 * 109.47110 * 337.73950 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6107 -2.1891 1.2015 6 7 2.0337 -2.8618 2.4324 7 6 3.3845 -3.4196 2.5351 8 6 3.4110 -4.7899 1.9083 9 1 2.5338 -5.1715 1.4070 10 6 4.5553 -5.5562 1.9746 11 7 5.6234 -5.0916 2.5853 12 14 4.5884 -7.2543 1.1971 13 1 4.3189 -7.1376 -0.2586 14 1 5.9244 -7.8683 1.4058 15 1 3.5483 -8.1073 1.8263 16 6 1.1802 -2.9673 3.4701 17 8 0.0487 -2.5319 3.3736 18 6 1.6175 -3.6096 4.7199 19 6 1.0962 -4.7579 5.2903 20 6 1.8375 -4.9609 6.4566 21 7 2.7182 -3.9971 6.5454 22 7 2.6185 -3.1915 5.5499 23 6 3.4477 -2.0020 5.3402 24 1 -0.3633 0.5614 0.8607 25 1 -0.3633 0.4648 -0.9166 26 1 -0.3633 -1.0261 0.0558 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6213 -0.2490 2.1379 32 1 3.1278 -0.6619 1.2844 33 1 2.0747 -2.6757 0.3437 34 1 0.5262 -2.2476 1.1099 35 1 4.0870 -2.7685 2.0150 36 1 3.6677 -3.4948 3.5850 37 1 6.4285 -5.6306 2.6316 38 1 0.2876 -5.3669 4.9141 39 1 1.7064 -5.7694 7.1606 40 1 4.2571 -2.2403 4.6501 41 1 2.8367 -1.2024 4.9213 42 1 3.8662 -1.6782 6.2931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103439931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:17 Heat of formation + Delta-G solvation = 14.736098 kcal Electronic energy + Delta-G solvation = -22853.381208 eV Core-core repulsion = 19641.383144 eV Total energy + Delta-G solvation = -3211.998064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.41101 -40.63675 -37.88735 -36.50488 -34.55468 -34.28173 -32.08319 -30.42256 -28.97036 -28.00801 -27.95677 -25.30855 -25.07328 -22.82817 -22.36940 -20.87294 -20.12426 -18.79187 -18.58959 -17.73719 -16.81596 -16.72187 -16.29272 -16.15579 -15.88592 -15.17583 -14.76041 -14.64006 -14.44970 -14.39116 -14.09686 -13.88917 -13.68453 -13.43769 -13.26213 -13.09974 -12.87601 -12.75759 -12.59991 -12.24959 -12.12909 -11.98596 -11.79273 -11.59024 -11.52647 -11.41072 -11.11523 -10.62601 -10.04922 -9.90679 -9.55522 -8.25196 -6.37828 0.60634 1.36338 1.38896 1.40918 1.47491 1.79314 1.82990 2.28099 2.39196 3.06853 3.45987 3.65751 3.94072 3.94912 4.07162 4.19913 4.29748 4.30946 4.45904 4.47051 4.55166 4.67384 4.68967 4.73755 4.81544 4.88645 4.93033 4.97436 5.03046 5.08184 5.14199 5.16717 5.33004 5.47786 5.50246 5.58257 5.63318 5.72430 5.87241 6.00163 6.37695 6.70992 7.04098 7.15621 7.33213 8.80498 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.007318 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.351937 B = 3825.109163 C = 5225.236073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.116 4.116 5 C 0.112 3.888 6 N -0.581 5.581 7 C 0.243 3.757 8 C -0.550 4.550 9 H 0.050 0.950 10 C 0.025 3.975 11 N -0.916 5.916 12 Si 0.952 3.048 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.275 1.275 16 C 0.587 3.413 17 O -0.573 6.573 18 C -0.028 4.028 19 C -0.202 4.202 20 C 0.001 3.999 21 N -0.306 5.306 22 N -0.274 5.274 23 C 0.079 3.921 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.025 0.975 36 H 0.044 0.956 37 H 0.267 0.733 38 H 0.164 0.836 39 H 0.218 0.782 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 8.280 -0.386 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.198 4.198 4 C -0.155 4.155 5 C -0.010 4.010 6 N -0.309 5.309 7 C 0.123 3.877 8 C -0.589 4.589 9 H 0.069 0.931 10 C -0.176 4.176 11 N -0.555 5.555 12 Si 0.778 3.222 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.201 1.201 16 C 0.373 3.627 17 O -0.454 6.454 18 C -0.157 4.157 19 C -0.230 4.230 20 C -0.176 4.176 21 N -0.137 5.137 22 N -0.063 5.063 23 C -0.060 4.060 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.182 0.818 39 H 0.234 0.766 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.148 9.037 0.211 9.946 hybrid contribution -0.260 -1.508 -0.879 1.765 sum -4.408 7.529 -0.668 8.750 Atomic orbital electron populations 1.21873 0.94961 1.01517 1.02002 1.21044 0.96124 0.96842 0.96999 1.21786 1.01008 0.94802 1.02217 1.21892 1.00844 0.93791 0.98969 1.21653 1.00680 0.92899 0.85813 1.48249 1.15135 1.53746 1.13806 1.19370 0.77413 0.92645 0.98307 1.21605 0.98465 1.01980 1.36822 0.93140 1.25580 0.95003 1.01571 0.95455 1.69966 1.03173 1.39137 1.43209 0.85687 0.77328 0.79943 0.79271 1.19284 1.20571 1.20060 1.17223 0.84487 0.78136 0.82861 1.90707 1.20145 1.50811 1.83714 1.21621 0.96420 1.01272 0.96361 1.22261 1.05157 0.97728 0.97892 1.23986 0.94535 0.99691 0.99403 1.73013 1.24107 1.04488 1.12102 1.45763 1.24273 1.21082 1.15158 1.22425 0.95057 0.82772 1.05787 0.93211 0.91211 0.93490 0.90680 0.92599 0.91326 0.92844 0.92828 0.91978 0.90632 0.90405 0.95738 0.93790 0.92393 0.81812 0.76573 0.89770 0.88671 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.00 71.98 0.65 -2.68 16 2 C -0.09 -2.12 2.93 -10.79 -0.03 -2.15 16 3 C -0.14 -2.72 9.19 71.98 0.66 -2.06 16 4 C -0.12 -3.41 5.02 30.59 0.15 -3.25 16 5 C 0.11 3.97 5.30 86.38 0.46 4.43 16 6 N -0.58 -24.22 2.46 -830.34 -2.04 -26.27 16 7 C 0.24 11.43 4.61 85.63 0.40 11.83 16 8 C -0.55 -29.01 9.37 25.60 0.24 -28.77 16 9 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 10 C 0.02 1.31 5.46 84.65 0.46 1.77 16 11 N -0.92 -50.47 13.29 21.45 0.28 -50.18 16 12 Si 0.95 42.42 29.54 68.60 2.03 44.44 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 16 C 0.59 25.39 7.09 86.59 0.61 26.00 16 17 O -0.57 -26.30 16.61 -4.11 -0.07 -26.37 16 18 C -0.03 -1.17 5.40 40.79 0.22 -0.95 16 19 C -0.20 -7.77 11.04 22.66 0.25 -7.52 16 20 C 0.00 0.02 12.03 85.18 1.02 1.04 16 21 N -0.31 -11.70 11.90 -57.14 -0.68 -12.38 16 22 N -0.27 -10.61 3.16 -356.01 -1.12 -11.74 16 23 C 0.08 2.46 10.12 127.77 1.29 3.75 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.19 6.32 -2.39 -0.02 1.17 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 34 H 0.08 2.81 5.45 -2.39 -0.01 2.80 16 35 H 0.02 1.19 8.12 -2.39 -0.02 1.17 16 36 H 0.04 2.15 3.64 -2.39 -0.01 2.14 16 37 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.16 5.68 8.06 -2.91 -0.02 5.65 16 39 H 0.22 5.48 8.06 -2.91 -0.02 5.46 16 40 H 0.08 2.88 6.39 -2.39 -0.02 2.87 16 41 H 0.09 2.67 8.00 -2.39 -0.02 2.66 16 42 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -64.31 346.36 5.78 -58.53 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 1.00 Total: 22.51 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 6.39 Total: 1.45 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -3.56 Total: -100.56 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.07 Total: -26.37 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -64.31 5.78 -58.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103439931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.263 kcal (2) G-P(sol) polarization free energy of solvation -64.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds